###################################
478 groups of orthologs
579 in-paralogs from A.gossypii
717 in-paralogs from B.japonicum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 1345 bits
Score difference with first non-orthologous sequence - A.gossypii:1345 B.japonicum:1345

Q759I7              	100.00%		Q89CQ3              	100.00%
Bootstrap support for Q759I7 as seed ortholog is 100%.
Bootstrap support for Q89CQ3 as seed ortholog is 100%.

Group of orthologs #2. Best score 795 bits
Score difference with first non-orthologous sequence - A.gossypii:220 B.japonicum:795

Q753R1              	100.00%		P94317              	100.00%
Bootstrap support for Q753R1 as seed ortholog is 100%.
Bootstrap support for P94317 as seed ortholog is 100%.

Group of orthologs #3. Best score 793 bits
Score difference with first non-orthologous sequence - A.gossypii:793 B.japonicum:793

Q755Z3              	100.00%		Q89X63              	100.00%
Bootstrap support for Q755Z3 as seed ortholog is 100%.
Bootstrap support for Q89X63 as seed ortholog is 100%.

Group of orthologs #4. Best score 787 bits
Score difference with first non-orthologous sequence - A.gossypii:84 B.japonicum:787

Q758I5              	100.00%		Q89UL2              	100.00%
Bootstrap support for Q758I5 as seed ortholog is 96%.
Bootstrap support for Q89UL2 as seed ortholog is 100%.

Group of orthologs #5. Best score 783 bits
Score difference with first non-orthologous sequence - A.gossypii:682 B.japonicum:593

Q75C64              	100.00%		H7C6R5              	100.00%
Bootstrap support for Q75C64 as seed ortholog is 100%.
Bootstrap support for H7C6R5 as seed ortholog is 100%.

Group of orthologs #6. Best score 698 bits
Score difference with first non-orthologous sequence - A.gossypii:698 B.japonicum:698

Q75D10              	100.00%		Q9AMV8              	100.00%
Bootstrap support for Q75D10 as seed ortholog is 100%.
Bootstrap support for Q9AMV8 as seed ortholog is 100%.

Group of orthologs #7. Best score 695 bits
Score difference with first non-orthologous sequence - A.gossypii:582 B.japonicum:529

Q75D54              	100.00%		Q89X74              	100.00%
Bootstrap support for Q75D54 as seed ortholog is 100%.
Bootstrap support for Q89X74 as seed ortholog is 100%.

Group of orthologs #8. Best score 692 bits
Score difference with first non-orthologous sequence - A.gossypii:565 B.japonicum:539

Q751H8              	100.00%		Q89X72              	100.00%
Bootstrap support for Q751H8 as seed ortholog is 100%.
Bootstrap support for Q89X72 as seed ortholog is 100%.

Group of orthologs #9. Best score 665 bits
Score difference with first non-orthologous sequence - A.gossypii:665 B.japonicum:665

Q752M7              	100.00%		Q89BK9              	100.00%
Bootstrap support for Q752M7 as seed ortholog is 100%.
Bootstrap support for Q89BK9 as seed ortholog is 100%.

Group of orthologs #10. Best score 648 bits
Score difference with first non-orthologous sequence - A.gossypii:648 B.japonicum:648

Q75D66              	100.00%		Q89DR2              	100.00%
Bootstrap support for Q75D66 as seed ortholog is 100%.
Bootstrap support for Q89DR2 as seed ortholog is 100%.

Group of orthologs #11. Best score 639 bits
Score difference with first non-orthologous sequence - A.gossypii:545 B.japonicum:142

Q754B5              	100.00%		P77829              	100.00%
                    	       		Q89IK8              	58.22%
                    	       		P35861              	54.05%
                    	       		P35862              	53.00%
                    	       		Q89DA6              	47.52%
Bootstrap support for Q754B5 as seed ortholog is 100%.
Bootstrap support for P77829 as seed ortholog is 99%.

Group of orthologs #12. Best score 628 bits
Score difference with first non-orthologous sequence - A.gossypii:628 B.japonicum:214

Q750T7              	100.00%		Q89WV5              	100.00%
Q758X0              	17.77%		
Bootstrap support for Q750T7 as seed ortholog is 100%.
Bootstrap support for Q89WV5 as seed ortholog is 99%.

Group of orthologs #13. Best score 612 bits
Score difference with first non-orthologous sequence - A.gossypii:436 B.japonicum:612

Q75EP5              	100.00%		Q89LR8              	100.00%
Bootstrap support for Q75EP5 as seed ortholog is 100%.
Bootstrap support for Q89LR8 as seed ortholog is 100%.

Group of orthologs #14. Best score 603 bits
Score difference with first non-orthologous sequence - A.gossypii:603 B.japonicum:215

P62514              	100.00%		P31833              	100.00%
Bootstrap support for P62514 as seed ortholog is 100%.
Bootstrap support for P31833 as seed ortholog is 100%.

Group of orthologs #15. Best score 600 bits
Score difference with first non-orthologous sequence - A.gossypii:427 B.japonicum:118

Q74ZM9              	100.00%		Q89X34              	100.00%
Bootstrap support for Q74ZM9 as seed ortholog is 100%.
Bootstrap support for Q89X34 as seed ortholog is 99%.

Group of orthologs #16. Best score 578 bits
Score difference with first non-orthologous sequence - A.gossypii:441 B.japonicum:464

Q74ZG2              	100.00%		Q89BJ8              	100.00%
Bootstrap support for Q74ZG2 as seed ortholog is 100%.
Bootstrap support for Q89BJ8 as seed ortholog is 100%.

Group of orthologs #17. Best score 547 bits
Score difference with first non-orthologous sequence - A.gossypii:547 B.japonicum:55

Q75CE3              	100.00%		P28894              	100.00%
Bootstrap support for Q75CE3 as seed ortholog is 100%.
Bootstrap support for P28894 as seed ortholog is 93%.

Group of orthologs #18. Best score 544 bits
Score difference with first non-orthologous sequence - A.gossypii:544 B.japonicum:544

Q757H0              	100.00%		Q89WQ1              	100.00%
Bootstrap support for Q757H0 as seed ortholog is 100%.
Bootstrap support for Q89WQ1 as seed ortholog is 100%.

Group of orthologs #19. Best score 534 bits
Score difference with first non-orthologous sequence - A.gossypii:534 B.japonicum:534

Q753S1              	100.00%		Q89WP5              	100.00%
Bootstrap support for Q753S1 as seed ortholog is 100%.
Bootstrap support for Q89WP5 as seed ortholog is 100%.

Group of orthologs #20. Best score 533 bits
Score difference with first non-orthologous sequence - A.gossypii:533 B.japonicum:533

Q75ED8              	100.00%		Q89J82              	100.00%
Bootstrap support for Q75ED8 as seed ortholog is 100%.
Bootstrap support for Q89J82 as seed ortholog is 100%.

Group of orthologs #21. Best score 524 bits
Score difference with first non-orthologous sequence - A.gossypii:524 B.japonicum:524

Q756B7              	100.00%		Q89N53              	100.00%
Bootstrap support for Q756B7 as seed ortholog is 100%.
Bootstrap support for Q89N53 as seed ortholog is 100%.

Group of orthologs #22. Best score 518 bits
Score difference with first non-orthologous sequence - A.gossypii:518 B.japonicum:518

Q75ET8              	100.00%		Q89I92              	100.00%
Q757F2              	22.22%		
Bootstrap support for Q75ET8 as seed ortholog is 100%.
Bootstrap support for Q89I92 as seed ortholog is 100%.

Group of orthologs #23. Best score 506 bits
Score difference with first non-orthologous sequence - A.gossypii:506 B.japonicum:506

Q759B4              	100.00%		Q89I89              	100.00%
Bootstrap support for Q759B4 as seed ortholog is 100%.
Bootstrap support for Q89I89 as seed ortholog is 100%.

Group of orthologs #24. Best score 505 bits
Score difference with first non-orthologous sequence - A.gossypii:505 B.japonicum:505

Q753T3              	100.00%		Q89HP6              	100.00%
Bootstrap support for Q753T3 as seed ortholog is 100%.
Bootstrap support for Q89HP6 as seed ortholog is 100%.

Group of orthologs #25. Best score 495 bits
Score difference with first non-orthologous sequence - A.gossypii:495 B.japonicum:260

Q751N2              	100.00%		Q89NP3              	100.00%
Bootstrap support for Q751N2 as seed ortholog is 100%.
Bootstrap support for Q89NP3 as seed ortholog is 100%.

Group of orthologs #26. Best score 493 bits
Score difference with first non-orthologous sequence - A.gossypii:410 B.japonicum:238

Q758Q8              	100.00%		Q89G44              	100.00%
Bootstrap support for Q758Q8 as seed ortholog is 100%.
Bootstrap support for Q89G44 as seed ortholog is 100%.

Group of orthologs #27. Best score 493 bits
Score difference with first non-orthologous sequence - A.gossypii:493 B.japonicum:390

Q758Z0              	100.00%		Q89S81              	100.00%
Bootstrap support for Q758Z0 as seed ortholog is 100%.
Bootstrap support for Q89S81 as seed ortholog is 100%.

Group of orthologs #28. Best score 486 bits
Score difference with first non-orthologous sequence - A.gossypii:123 B.japonicum:232

Q75CZ5              	100.00%		Q89J81              	100.00%
Bootstrap support for Q75CZ5 as seed ortholog is 98%.
Bootstrap support for Q89J81 as seed ortholog is 100%.

Group of orthologs #29. Best score 480 bits
Score difference with first non-orthologous sequence - A.gossypii:116 B.japonicum:480

Q754Q9              	100.00%		Q89KG3              	100.00%
Bootstrap support for Q754Q9 as seed ortholog is 98%.
Bootstrap support for Q89KG3 as seed ortholog is 100%.

Group of orthologs #30. Best score 474 bits
Score difference with first non-orthologous sequence - A.gossypii:219 B.japonicum:221

Q757K5              	100.00%		Q89W86              	100.00%
Bootstrap support for Q757K5 as seed ortholog is 100%.
Bootstrap support for Q89W86 as seed ortholog is 100%.

Group of orthologs #31. Best score 472 bits
Score difference with first non-orthologous sequence - A.gossypii:472 B.japonicum:400

Q75BD2              	100.00%		H7C6U6              	100.00%
                    	       		Q89U93              	27.45%
Bootstrap support for Q75BD2 as seed ortholog is 100%.
Bootstrap support for H7C6U6 as seed ortholog is 100%.

Group of orthologs #32. Best score 470 bits
Score difference with first non-orthologous sequence - A.gossypii:470 B.japonicum:151

Q752R1              	100.00%		Q89X65              	100.00%
Bootstrap support for Q752R1 as seed ortholog is 100%.
Bootstrap support for Q89X65 as seed ortholog is 99%.

Group of orthologs #33. Best score 457 bits
Score difference with first non-orthologous sequence - A.gossypii:457 B.japonicum:207

Q75CR7              	100.00%		Q89GY0              	100.00%
Bootstrap support for Q75CR7 as seed ortholog is 100%.
Bootstrap support for Q89GY0 as seed ortholog is 100%.

Group of orthologs #34. Best score 455 bits
Score difference with first non-orthologous sequence - A.gossypii:455 B.japonicum:113

Q75CN6              	100.00%		Q89KY5              	100.00%
                    	       		Q89HA2              	19.41%
Bootstrap support for Q75CN6 as seed ortholog is 100%.
Bootstrap support for Q89KY5 as seed ortholog is 99%.

Group of orthologs #35. Best score 454 bits
Score difference with first non-orthologous sequence - A.gossypii:454 B.japonicum:454

Q752T8              	100.00%		Q89WE5              	100.00%
Bootstrap support for Q752T8 as seed ortholog is 100%.
Bootstrap support for Q89WE5 as seed ortholog is 100%.

Group of orthologs #36. Best score 452 bits
Score difference with first non-orthologous sequence - A.gossypii:452 B.japonicum:353

Q751I0              	100.00%		H7C810              	100.00%
Q75EQ4              	100.00%		
Q75DQ8              	25.98%		
Bootstrap support for Q751I0 as seed ortholog is 100%.
Bootstrap support for Q75EQ4 as seed ortholog is 100%.
Bootstrap support for H7C810 as seed ortholog is 100%.

Group of orthologs #37. Best score 449 bits
Score difference with first non-orthologous sequence - A.gossypii:449 B.japonicum:449

Q753M0              	100.00%		Q89BK7              	100.00%
Bootstrap support for Q753M0 as seed ortholog is 100%.
Bootstrap support for Q89BK7 as seed ortholog is 100%.

Group of orthologs #38. Best score 443 bits
Score difference with first non-orthologous sequence - A.gossypii:77 B.japonicum:92

Q75CG3              	100.00%		Q89D38              	100.00%
Q758W1              	34.18%		Q89GM3              	33.43%
                    	       		Q89NQ8              	5.72%
Bootstrap support for Q75CG3 as seed ortholog is 96%.
Bootstrap support for Q89D38 as seed ortholog is 97%.

Group of orthologs #39. Best score 440 bits
Score difference with first non-orthologous sequence - A.gossypii:440 B.japonicum:440

Q751L7              	100.00%		Q89KU5              	100.00%
Bootstrap support for Q751L7 as seed ortholog is 100%.
Bootstrap support for Q89KU5 as seed ortholog is 100%.

Group of orthologs #40. Best score 430 bits
Score difference with first non-orthologous sequence - A.gossypii:141 B.japonicum:430

Q751F3              	100.00%		Q89DF8              	100.00%
Bootstrap support for Q751F3 as seed ortholog is 96%.
Bootstrap support for Q89DF8 as seed ortholog is 100%.

Group of orthologs #41. Best score 428 bits
Score difference with first non-orthologous sequence - A.gossypii:153 B.japonicum:428

Q75CF8              	100.00%		Q89IU7              	100.00%
Bootstrap support for Q75CF8 as seed ortholog is 99%.
Bootstrap support for Q89IU7 as seed ortholog is 100%.

Group of orthologs #42. Best score 424 bits
Score difference with first non-orthologous sequence - A.gossypii:424 B.japonicum:424

Q750T5              	100.00%		Q89E50              	100.00%
Bootstrap support for Q750T5 as seed ortholog is 100%.
Bootstrap support for Q89E50 as seed ortholog is 100%.

Group of orthologs #43. Best score 408 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:408

Q75ED6              	100.00%		Q89DZ5              	100.00%
                    	       		Q89JL6              	100.00%
                    	       		Q89LX2              	11.17%
Bootstrap support for Q75ED6 as seed ortholog is 93%.
Bootstrap support for Q89DZ5 as seed ortholog is 100%.
Bootstrap support for Q89JL6 as seed ortholog is 100%.

Group of orthologs #44. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:406 B.japonicum:406

P62513              	100.00%		P51131              	100.00%
Bootstrap support for P62513 as seed ortholog is 100%.
Bootstrap support for P51131 as seed ortholog is 100%.

Group of orthologs #45. Best score 406 bits
Score difference with first non-orthologous sequence - A.gossypii:406 B.japonicum:406

Q8J2M3              	100.00%		Q89CK8              	100.00%
Bootstrap support for Q8J2M3 as seed ortholog is 100%.
Bootstrap support for Q89CK8 as seed ortholog is 100%.

Group of orthologs #46. Best score 405 bits
Score difference with first non-orthologous sequence - A.gossypii:405 B.japonicum:405

Q756H2              	100.00%		Q89KV6              	100.00%
Bootstrap support for Q756H2 as seed ortholog is 100%.
Bootstrap support for Q89KV6 as seed ortholog is 100%.

Group of orthologs #47. Best score 400 bits
Score difference with first non-orthologous sequence - A.gossypii:400 B.japonicum:54

Q75BZ7              	100.00%		Q89CV6              	100.00%
Bootstrap support for Q75BZ7 as seed ortholog is 100%.
Bootstrap support for Q89CV6 as seed ortholog is 87%.

Group of orthologs #48. Best score 399 bits
Score difference with first non-orthologous sequence - A.gossypii:399 B.japonicum:399

Q75DQ3              	100.00%		P94323              	100.00%
                    	       		P59362              	64.25%
Bootstrap support for Q75DQ3 as seed ortholog is 100%.
Bootstrap support for P94323 as seed ortholog is 100%.

Group of orthologs #49. Best score 393 bits
Score difference with first non-orthologous sequence - A.gossypii:103 B.japonicum:393

Q74ZE0              	100.00%		Q89KR6              	100.00%
Bootstrap support for Q74ZE0 as seed ortholog is 98%.
Bootstrap support for Q89KR6 as seed ortholog is 100%.

Group of orthologs #50. Best score 386 bits
Score difference with first non-orthologous sequence - A.gossypii:386 B.japonicum:173

Q75EB0              	100.00%		Q89KW8              	100.00%
Bootstrap support for Q75EB0 as seed ortholog is 100%.
Bootstrap support for Q89KW8 as seed ortholog is 100%.

Group of orthologs #51. Best score 384 bits
Score difference with first non-orthologous sequence - A.gossypii:203 B.japonicum:384

Q757P6              	100.00%		Q89WA9              	100.00%
Bootstrap support for Q757P6 as seed ortholog is 100%.
Bootstrap support for Q89WA9 as seed ortholog is 100%.

Group of orthologs #52. Best score 377 bits
Score difference with first non-orthologous sequence - A.gossypii:231 B.japonicum:243

Q75DX7              	100.00%		P08262              	100.00%
Bootstrap support for Q75DX7 as seed ortholog is 100%.
Bootstrap support for P08262 as seed ortholog is 100%.

Group of orthologs #53. Best score 370 bits
Score difference with first non-orthologous sequence - A.gossypii:185 B.japonicum:165

Q75AE8              	100.00%		Q89XR2              	100.00%
Bootstrap support for Q75AE8 as seed ortholog is 100%.
Bootstrap support for Q89XR2 as seed ortholog is 99%.

Group of orthologs #54. Best score 363 bits
Score difference with first non-orthologous sequence - A.gossypii:363 B.japonicum:363

Q754W4              	100.00%		Q89M04              	100.00%
Q75DX5              	17.32%		
Bootstrap support for Q754W4 as seed ortholog is 100%.
Bootstrap support for Q89M04 as seed ortholog is 100%.

Group of orthologs #55. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 B.japonicum:361

Q750Z9              	100.00%		Q89G76              	100.00%
Bootstrap support for Q750Z9 as seed ortholog is 100%.
Bootstrap support for Q89G76 as seed ortholog is 100%.

Group of orthologs #56. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:361 B.japonicum:293

Q74ZV7              	100.00%		Q89QA4              	100.00%
Bootstrap support for Q74ZV7 as seed ortholog is 100%.
Bootstrap support for Q89QA4 as seed ortholog is 100%.

Group of orthologs #57. Best score 361 bits
Score difference with first non-orthologous sequence - A.gossypii:286 B.japonicum:174

Q756Z1              	100.00%		Q89RB7              	100.00%
Bootstrap support for Q756Z1 as seed ortholog is 100%.
Bootstrap support for Q89RB7 as seed ortholog is 99%.

Group of orthologs #58. Best score 358 bits
Score difference with first non-orthologous sequence - A.gossypii:101 B.japonicum:358

Q75D87              	100.00%		Q89VX1              	100.00%
Bootstrap support for Q75D87 as seed ortholog is 99%.
Bootstrap support for Q89VX1 as seed ortholog is 100%.

Group of orthologs #59. Best score 354 bits
Score difference with first non-orthologous sequence - A.gossypii:354 B.japonicum:150

Q75CF2              	100.00%		Q89C33              	100.00%
Bootstrap support for Q75CF2 as seed ortholog is 100%.
Bootstrap support for Q89C33 as seed ortholog is 99%.

Group of orthologs #60. Best score 353 bits
Score difference with first non-orthologous sequence - A.gossypii:36 B.japonicum:120

Q75C31              	100.00%		Q89WI7              	100.00%
Bootstrap support for Q75C31 as seed ortholog is 67%.
Alternative seed ortholog is Q750J2 (36 bits away from this cluster)
Bootstrap support for Q89WI7 as seed ortholog is 97%.

Group of orthologs #61. Best score 346 bits
Score difference with first non-orthologous sequence - A.gossypii:346 B.japonicum:346

Q758F0              	100.00%		P24060              	100.00%
Q75BQ6              	34.21%		
Bootstrap support for Q758F0 as seed ortholog is 100%.
Bootstrap support for P24060 as seed ortholog is 100%.

Group of orthologs #62. Best score 344 bits
Score difference with first non-orthologous sequence - A.gossypii:17 B.japonicum:72

Q758Q4              	100.00%		Q89NM3              	100.00%
Bootstrap support for Q758Q4 as seed ortholog is 67%.
Alternative seed ortholog is Q750P4 (17 bits away from this cluster)
Bootstrap support for Q89NM3 as seed ortholog is 92%.

Group of orthologs #63. Best score 338 bits
Score difference with first non-orthologous sequence - A.gossypii:338 B.japonicum:338

Q758H3              	100.00%		Q89X60              	100.00%
Bootstrap support for Q758H3 as seed ortholog is 100%.
Bootstrap support for Q89X60 as seed ortholog is 100%.

Group of orthologs #64. Best score 336 bits
Score difference with first non-orthologous sequence - A.gossypii:336 B.japonicum:144

Q756A3              	100.00%		Q89KX1              	100.00%
Bootstrap support for Q756A3 as seed ortholog is 100%.
Bootstrap support for Q89KX1 as seed ortholog is 99%.

Group of orthologs #65. Best score 334 bits
Score difference with first non-orthologous sequence - A.gossypii:261 B.japonicum:59

Q757P4              	100.00%		Q89MS4              	100.00%
Bootstrap support for Q757P4 as seed ortholog is 100%.
Bootstrap support for Q89MS4 as seed ortholog is 90%.

Group of orthologs #66. Best score 332 bits
Score difference with first non-orthologous sequence - A.gossypii:332 B.japonicum:332

Q757L9              	100.00%		P59613              	100.00%
Bootstrap support for Q757L9 as seed ortholog is 100%.
Bootstrap support for P59613 as seed ortholog is 100%.

Group of orthologs #67. Best score 332 bits
Score difference with first non-orthologous sequence - A.gossypii:332 B.japonicum:332

Q751Y3              	100.00%		Q89HP5              	100.00%
Bootstrap support for Q751Y3 as seed ortholog is 100%.
Bootstrap support for Q89HP5 as seed ortholog is 100%.

Group of orthologs #68. Best score 332 bits
Score difference with first non-orthologous sequence - A.gossypii:332 B.japonicum:332

Q75C89              	100.00%		Q89Q92              	100.00%
Bootstrap support for Q75C89 as seed ortholog is 100%.
Bootstrap support for Q89Q92 as seed ortholog is 100%.

Group of orthologs #69. Best score 331 bits
Score difference with first non-orthologous sequence - A.gossypii:331 B.japonicum:331

Q00063              	100.00%		Q89V75              	100.00%
Bootstrap support for Q00063 as seed ortholog is 100%.
Bootstrap support for Q89V75 as seed ortholog is 100%.

Group of orthologs #70. Best score 320 bits
Score difference with first non-orthologous sequence - A.gossypii:320 B.japonicum:148

Q751B0              	100.00%		Q89X64              	100.00%
Bootstrap support for Q751B0 as seed ortholog is 100%.
Bootstrap support for Q89X64 as seed ortholog is 99%.

Group of orthologs #71. Best score 318 bits
Score difference with first non-orthologous sequence - A.gossypii:318 B.japonicum:318

Q753S2              	100.00%		Q89DE1              	100.00%
Bootstrap support for Q753S2 as seed ortholog is 100%.
Bootstrap support for Q89DE1 as seed ortholog is 100%.

Group of orthologs #72. Best score 315 bits
Score difference with first non-orthologous sequence - A.gossypii:315 B.japonicum:315

Q750I3              	100.00%		Q89FW0              	100.00%
Bootstrap support for Q750I3 as seed ortholog is 100%.
Bootstrap support for Q89FW0 as seed ortholog is 100%.

Group of orthologs #73. Best score 314 bits
Score difference with first non-orthologous sequence - A.gossypii:314 B.japonicum:314

Q75CI4              	100.00%		H7C6L4              	100.00%
Bootstrap support for Q75CI4 as seed ortholog is 100%.
Bootstrap support for H7C6L4 as seed ortholog is 100%.

Group of orthologs #74. Best score 309 bits
Score difference with first non-orthologous sequence - A.gossypii:309 B.japonicum:109

Q751Z2              	100.00%		Q89UA9              	100.00%
Q75C94              	21.24%		
Bootstrap support for Q751Z2 as seed ortholog is 100%.
Bootstrap support for Q89UA9 as seed ortholog is 99%.

Group of orthologs #75. Best score 307 bits
Score difference with first non-orthologous sequence - A.gossypii:307 B.japonicum:60

Q759V7              	100.00%		Q89N93              	100.00%
                    	       		Q89NV9              	5.06%
Bootstrap support for Q759V7 as seed ortholog is 100%.
Bootstrap support for Q89N93 as seed ortholog is 93%.

Group of orthologs #76. Best score 306 bits
Score difference with first non-orthologous sequence - A.gossypii:306 B.japonicum:162

Q75CD0              	100.00%		Q89S36              	100.00%
                    	       		Q89GX1              	16.37%
                    	       		Q89NF5              	13.64%
Bootstrap support for Q75CD0 as seed ortholog is 100%.
Bootstrap support for Q89S36 as seed ortholog is 99%.

Group of orthologs #77. Best score 304 bits
Score difference with first non-orthologous sequence - A.gossypii:304 B.japonicum:304

Q75A34              	100.00%		Q89J75              	100.00%
Q756K2              	11.24%		
Q759A3              	8.52%		
Bootstrap support for Q75A34 as seed ortholog is 100%.
Bootstrap support for Q89J75 as seed ortholog is 100%.

Group of orthologs #78. Best score 303 bits
Score difference with first non-orthologous sequence - A.gossypii:303 B.japonicum:150

Q756E4              	100.00%		Q89RT4              	100.00%
                    	       		Q89FZ0              	28.18%
Bootstrap support for Q756E4 as seed ortholog is 100%.
Bootstrap support for Q89RT4 as seed ortholog is 99%.

Group of orthologs #79. Best score 303 bits
Score difference with first non-orthologous sequence - A.gossypii:303 B.japonicum:111

Q74ZK4              	100.00%		Q89NS7              	100.00%
Bootstrap support for Q74ZK4 as seed ortholog is 100%.
Bootstrap support for Q89NS7 as seed ortholog is 99%.

Group of orthologs #80. Best score 298 bits
Score difference with first non-orthologous sequence - A.gossypii:298 B.japonicum:149

Q75EJ5              	100.00%		Q89IH9              	100.00%
Q757I1              	83.41%		
Q75DQ0              	50.48%		
Bootstrap support for Q75EJ5 as seed ortholog is 100%.
Bootstrap support for Q89IH9 as seed ortholog is 99%.

Group of orthologs #81. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 B.japonicum:203

Q74ZU5              	100.00%		Q89KW7              	100.00%
Bootstrap support for Q74ZU5 as seed ortholog is 100%.
Bootstrap support for Q89KW7 as seed ortholog is 100%.

Group of orthologs #82. Best score 297 bits
Score difference with first non-orthologous sequence - A.gossypii:297 B.japonicum:297

Q754D6              	100.00%		Q89X62              	100.00%
Bootstrap support for Q754D6 as seed ortholog is 100%.
Bootstrap support for Q89X62 as seed ortholog is 100%.

Group of orthologs #83. Best score 296 bits
Score difference with first non-orthologous sequence - A.gossypii:296 B.japonicum:296

Q75E56              	100.00%		Q89EM1              	100.00%
Bootstrap support for Q75E56 as seed ortholog is 100%.
Bootstrap support for Q89EM1 as seed ortholog is 100%.

Group of orthologs #84. Best score 295 bits
Score difference with first non-orthologous sequence - A.gossypii:295 B.japonicum:295

Q75E53              	100.00%		Q89JB6              	100.00%
Bootstrap support for Q75E53 as seed ortholog is 100%.
Bootstrap support for Q89JB6 as seed ortholog is 100%.

Group of orthologs #85. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:30 B.japonicum:106

Q755N4              	100.00%		Q89UH0              	100.00%
Q75B50              	9.04%		
Bootstrap support for Q755N4 as seed ortholog is 67%.
Alternative seed ortholog is Q75EW9 (30 bits away from this cluster)
Bootstrap support for Q89UH0 as seed ortholog is 99%.

Group of orthologs #86. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:294 B.japonicum:173

Q75CM8              	100.00%		Q89DQ9              	100.00%
Bootstrap support for Q75CM8 as seed ortholog is 100%.
Bootstrap support for Q89DQ9 as seed ortholog is 99%.

Group of orthologs #87. Best score 294 bits
Score difference with first non-orthologous sequence - A.gossypii:178 B.japonicum:246

Q75F61              	100.00%		Q89LM7              	100.00%
Bootstrap support for Q75F61 as seed ortholog is 99%.
Bootstrap support for Q89LM7 as seed ortholog is 100%.

Group of orthologs #88. Best score 291 bits
Score difference with first non-orthologous sequence - A.gossypii:291 B.japonicum:291

Q753Q4              	100.00%		Q89J74              	100.00%
Q75B52              	19.55%		
Bootstrap support for Q753Q4 as seed ortholog is 100%.
Bootstrap support for Q89J74 as seed ortholog is 100%.

Group of orthologs #89. Best score 290 bits
Score difference with first non-orthologous sequence - A.gossypii:290 B.japonicum:77

Q75AJ9              	100.00%		Q89MV7              	100.00%
Bootstrap support for Q75AJ9 as seed ortholog is 100%.
Bootstrap support for Q89MV7 as seed ortholog is 96%.

Group of orthologs #90. Best score 289 bits
Score difference with first non-orthologous sequence - A.gossypii:289 B.japonicum:218

Q753V1              	100.00%		Q89K67              	100.00%
Q75C79              	27.37%		
Q75AS9              	19.30%		
Bootstrap support for Q753V1 as seed ortholog is 100%.
Bootstrap support for Q89K67 as seed ortholog is 100%.

Group of orthologs #91. Best score 284 bits
Score difference with first non-orthologous sequence - A.gossypii:284 B.japonicum:163

Q75CU3              	100.00%		Q89CL2              	100.00%
                    	       		Q89GR0              	56.30%
Bootstrap support for Q75CU3 as seed ortholog is 100%.
Bootstrap support for Q89CL2 as seed ortholog is 99%.

Group of orthologs #92. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:281 B.japonicum:173

Q750K5              	100.00%		P53573              	100.00%
Bootstrap support for Q750K5 as seed ortholog is 100%.
Bootstrap support for P53573 as seed ortholog is 100%.

Group of orthologs #93. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:212 B.japonicum:155

Q757R7              	100.00%		Q89QH1              	100.00%
Bootstrap support for Q757R7 as seed ortholog is 100%.
Bootstrap support for Q89QH1 as seed ortholog is 99%.

Group of orthologs #94. Best score 281 bits
Score difference with first non-orthologous sequence - A.gossypii:281 B.japonicum:281

Q753V9              	100.00%		Q89WU7              	100.00%
Bootstrap support for Q753V9 as seed ortholog is 100%.
Bootstrap support for Q89WU7 as seed ortholog is 100%.

Group of orthologs #95. Best score 280 bits
Score difference with first non-orthologous sequence - A.gossypii:280 B.japonicum:280

Q75B59              	100.00%		Q89RY1              	100.00%
Bootstrap support for Q75B59 as seed ortholog is 100%.
Bootstrap support for Q89RY1 as seed ortholog is 100%.

Group of orthologs #96. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 B.japonicum:279

Q752D6              	100.00%		Q89NP8              	100.00%
Bootstrap support for Q752D6 as seed ortholog is 100%.
Bootstrap support for Q89NP8 as seed ortholog is 100%.

Group of orthologs #97. Best score 279 bits
Score difference with first non-orthologous sequence - A.gossypii:279 B.japonicum:279

Q75E77              	100.00%		Q89FE1              	100.00%
Bootstrap support for Q75E77 as seed ortholog is 100%.
Bootstrap support for Q89FE1 as seed ortholog is 100%.

Group of orthologs #98. Best score 275 bits
Score difference with first non-orthologous sequence - A.gossypii:275 B.japonicum:275

Q757Q0              	100.00%		Q89U95              	100.00%
Bootstrap support for Q757Q0 as seed ortholog is 100%.
Bootstrap support for Q89U95 as seed ortholog is 100%.

Group of orthologs #99. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 B.japonicum:219

Q75BT9              	100.00%		P04772              	100.00%
Bootstrap support for Q75BT9 as seed ortholog is 100%.
Bootstrap support for P04772 as seed ortholog is 100%.

Group of orthologs #100. Best score 274 bits
Score difference with first non-orthologous sequence - A.gossypii:274 B.japonicum:189

Q75CI8              	100.00%		Q89UK6              	100.00%
Bootstrap support for Q75CI8 as seed ortholog is 100%.
Bootstrap support for Q89UK6 as seed ortholog is 99%.

Group of orthologs #101. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 B.japonicum:273

Q758F4              	100.00%		Q89DK0              	100.00%
Q75DI5              	23.38%		
Bootstrap support for Q758F4 as seed ortholog is 100%.
Bootstrap support for Q89DK0 as seed ortholog is 100%.

Group of orthologs #102. Best score 273 bits
Score difference with first non-orthologous sequence - A.gossypii:273 B.japonicum:131

Q75D84              	100.00%		Q89K29              	100.00%
Bootstrap support for Q75D84 as seed ortholog is 100%.
Bootstrap support for Q89K29 as seed ortholog is 99%.

Group of orthologs #103. Best score 270 bits
Score difference with first non-orthologous sequence - A.gossypii:270 B.japonicum:114

Q75B56              	100.00%		Q89XT9              	100.00%
Bootstrap support for Q75B56 as seed ortholog is 100%.
Bootstrap support for Q89XT9 as seed ortholog is 99%.

Group of orthologs #104. Best score 269 bits
Score difference with first non-orthologous sequence - A.gossypii:269 B.japonicum:269

Q759Q4              	100.00%		Q89G35              	100.00%
Bootstrap support for Q759Q4 as seed ortholog is 100%.
Bootstrap support for Q89G35 as seed ortholog is 100%.

Group of orthologs #105. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:58 B.japonicum:179

Q758B3              	100.00%		Q89LU0              	100.00%
Bootstrap support for Q758B3 as seed ortholog is 94%.
Bootstrap support for Q89LU0 as seed ortholog is 100%.

Group of orthologs #106. Best score 267 bits
Score difference with first non-orthologous sequence - A.gossypii:267 B.japonicum:267

Q759C6              	100.00%		Q89X85              	100.00%
Bootstrap support for Q759C6 as seed ortholog is 100%.
Bootstrap support for Q89X85 as seed ortholog is 100%.

Group of orthologs #107. Best score 264 bits
Score difference with first non-orthologous sequence - A.gossypii:56 B.japonicum:182

Q74Z35              	100.00%		Q89DJ1              	100.00%
Q751A4              	39.39%		
Q759G2              	5.59%		
Bootstrap support for Q74Z35 as seed ortholog is 97%.
Bootstrap support for Q89DJ1 as seed ortholog is 100%.

Group of orthologs #108. Best score 262 bits
Score difference with first non-orthologous sequence - A.gossypii:262 B.japonicum:179

O60028              	100.00%		P37030              	100.00%
Bootstrap support for O60028 as seed ortholog is 100%.
Bootstrap support for P37030 as seed ortholog is 100%.

Group of orthologs #109. Best score 259 bits
Score difference with first non-orthologous sequence - A.gossypii:126 B.japonicum:113

O60027              	100.00%		Q89X19              	100.00%
                    	       		Q89XA0              	12.26%
Bootstrap support for O60027 as seed ortholog is 99%.
Bootstrap support for Q89X19 as seed ortholog is 99%.

Group of orthologs #110. Best score 257 bits
Score difference with first non-orthologous sequence - A.gossypii:175 B.japonicum:104

Q75AW1              	100.00%		Q89VE9              	100.00%
Bootstrap support for Q75AW1 as seed ortholog is 99%.
Bootstrap support for Q89VE9 as seed ortholog is 99%.

Group of orthologs #111. Best score 257 bits
Score difference with first non-orthologous sequence - A.gossypii:257 B.japonicum:257

Q75DG3              	100.00%		Q89WP4              	100.00%
Bootstrap support for Q75DG3 as seed ortholog is 100%.
Bootstrap support for Q89WP4 as seed ortholog is 100%.

Group of orthologs #112. Best score 256 bits
Score difference with first non-orthologous sequence - A.gossypii:256 B.japonicum:256

Q75DI3              	100.00%		Q89E49              	100.00%
Bootstrap support for Q75DI3 as seed ortholog is 100%.
Bootstrap support for Q89E49 as seed ortholog is 100%.

Group of orthologs #113. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:252 B.japonicum:252

Q751X2              	100.00%		P59397              	100.00%
Bootstrap support for Q751X2 as seed ortholog is 100%.
Bootstrap support for P59397 as seed ortholog is 100%.

Group of orthologs #114. Best score 252 bits
Score difference with first non-orthologous sequence - A.gossypii:252 B.japonicum:192

Q756N3              	100.00%		Q89W81              	100.00%
Bootstrap support for Q756N3 as seed ortholog is 100%.
Bootstrap support for Q89W81 as seed ortholog is 100%.

Group of orthologs #115. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:247 B.japonicum:247

Q759J0              	100.00%		Q89BM0              	100.00%
Q75EQ9              	19.23%		
Q759P9              	17.26%		
Q75E97              	16.71%		
Q759Y3              	11.14%		
Bootstrap support for Q759J0 as seed ortholog is 100%.
Bootstrap support for Q89BM0 as seed ortholog is 100%.

Group of orthologs #116. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:247 B.japonicum:20

Q753L0              	100.00%		Q89DN9              	100.00%
                    	       		Q89CH8              	34.46%
Bootstrap support for Q753L0 as seed ortholog is 100%.
Bootstrap support for Q89DN9 as seed ortholog is 68%.
Alternative seed ortholog is Q89VX0 (20 bits away from this cluster)

Group of orthologs #117. Best score 247 bits
Score difference with first non-orthologous sequence - A.gossypii:247 B.japonicum:247

Q75CE1              	100.00%		Q89VA7              	100.00%
Bootstrap support for Q75CE1 as seed ortholog is 100%.
Bootstrap support for Q89VA7 as seed ortholog is 100%.

Group of orthologs #118. Best score 245 bits
Score difference with first non-orthologous sequence - A.gossypii:245 B.japonicum:245

Q759Y5              	100.00%		P59610              	100.00%
Bootstrap support for Q759Y5 as seed ortholog is 100%.
Bootstrap support for P59610 as seed ortholog is 100%.

Group of orthologs #119. Best score 243 bits
Score difference with first non-orthologous sequence - A.gossypii:243 B.japonicum:243

Q751Q9              	100.00%		Q89K31              	100.00%
Bootstrap support for Q751Q9 as seed ortholog is 100%.
Bootstrap support for Q89K31 as seed ortholog is 100%.

Group of orthologs #120. Best score 242 bits
Score difference with first non-orthologous sequence - A.gossypii:242 B.japonicum:242

Q751N1              	100.00%		Q89MY2              	100.00%
Bootstrap support for Q751N1 as seed ortholog is 100%.
Bootstrap support for Q89MY2 as seed ortholog is 100%.

Group of orthologs #121. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:241 B.japonicum:241

Q74ZH6              	100.00%		Q89NW6              	100.00%
                    	       		Q89LR6              	61.89%
Bootstrap support for Q74ZH6 as seed ortholog is 100%.
Bootstrap support for Q89NW6 as seed ortholog is 100%.

Group of orthologs #122. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:109 B.japonicum:241

Q75D13              	100.00%		H7C6K5              	100.00%
Bootstrap support for Q75D13 as seed ortholog is 99%.
Bootstrap support for H7C6K5 as seed ortholog is 100%.

Group of orthologs #123. Best score 241 bits
Score difference with first non-orthologous sequence - A.gossypii:241 B.japonicum:241

Q75BE2              	100.00%		Q89XJ2              	100.00%
Bootstrap support for Q75BE2 as seed ortholog is 100%.
Bootstrap support for Q89XJ2 as seed ortholog is 100%.

Group of orthologs #124. Best score 240 bits
Score difference with first non-orthologous sequence - A.gossypii:240 B.japonicum:7

Q753M8              	100.00%		Q89WL9              	100.00%
Bootstrap support for Q753M8 as seed ortholog is 100%.
Bootstrap support for Q89WL9 as seed ortholog is 57%.
Alternative seed ortholog is Q89KY8 (7 bits away from this cluster)

Group of orthologs #125. Best score 239 bits
Score difference with first non-orthologous sequence - A.gossypii:239 B.japonicum:239

Q754R0              	100.00%		Q89KD9              	100.00%
Bootstrap support for Q754R0 as seed ortholog is 100%.
Bootstrap support for Q89KD9 as seed ortholog is 100%.

Group of orthologs #126. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 B.japonicum:143

Q74Z77              	100.00%		Q89D39              	100.00%
                    	       		Q89SF5              	18.10%
                    	       		Q89H15              	5.90%
Bootstrap support for Q74Z77 as seed ortholog is 100%.
Bootstrap support for Q89D39 as seed ortholog is 99%.

Group of orthologs #127. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:236 B.japonicum:236

Q759A9              	100.00%		Q89EE7              	100.00%
Bootstrap support for Q759A9 as seed ortholog is 100%.
Bootstrap support for Q89EE7 as seed ortholog is 100%.

Group of orthologs #128. Best score 236 bits
Score difference with first non-orthologous sequence - A.gossypii:5 B.japonicum:236

Q751Z3              	100.00%		Q89UL7              	100.00%
Bootstrap support for Q751Z3 as seed ortholog is 50%.
Alternative seed ortholog is Q757W0 (5 bits away from this cluster)
Bootstrap support for Q89UL7 as seed ortholog is 100%.

Group of orthologs #129. Best score 235 bits
Score difference with first non-orthologous sequence - A.gossypii:235 B.japonicum:235

Q75AI4              	100.00%		Q89YE5              	100.00%
Q75BW6              	41.82%		
Bootstrap support for Q75AI4 as seed ortholog is 100%.
Bootstrap support for Q89YE5 as seed ortholog is 100%.

Group of orthologs #130. Best score 235 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:136

Q750S7              	100.00%		Q89V74              	100.00%
Bootstrap support for Q750S7 as seed ortholog is 94%.
Bootstrap support for Q89V74 as seed ortholog is 99%.

Group of orthologs #131. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 B.japonicum:230

Q75DB0              	100.00%		Q89P62              	100.00%
                    	       		Q89EA7              	22.53%
                    	       		Q89Q04              	7.91%
Bootstrap support for Q75DB0 as seed ortholog is 100%.
Bootstrap support for Q89P62 as seed ortholog is 100%.

Group of orthologs #132. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:230 B.japonicum:230

Q75BE8              	100.00%		Q89DI0              	100.00%
Bootstrap support for Q75BE8 as seed ortholog is 100%.
Bootstrap support for Q89DI0 as seed ortholog is 100%.

Group of orthologs #133. Best score 230 bits
Score difference with first non-orthologous sequence - A.gossypii:119 B.japonicum:230

Q75EF3              	100.00%		Q89J87              	100.00%
Bootstrap support for Q75EF3 as seed ortholog is 99%.
Bootstrap support for Q89J87 as seed ortholog is 100%.

Group of orthologs #134. Best score 228 bits
Score difference with first non-orthologous sequence - A.gossypii:228 B.japonicum:155

Q75CP8              	100.00%		P53575              	100.00%
Bootstrap support for Q75CP8 as seed ortholog is 100%.
Bootstrap support for P53575 as seed ortholog is 100%.

Group of orthologs #135. Best score 226 bits
Score difference with first non-orthologous sequence - A.gossypii:226 B.japonicum:226

Q758A8              	100.00%		Q89H09              	100.00%
Bootstrap support for Q758A8 as seed ortholog is 100%.
Bootstrap support for Q89H09 as seed ortholog is 100%.

Group of orthologs #136. Best score 223 bits
Score difference with first non-orthologous sequence - A.gossypii:223 B.japonicum:142

Q754H5              	100.00%		Q89RM1              	100.00%
Bootstrap support for Q754H5 as seed ortholog is 100%.
Bootstrap support for Q89RM1 as seed ortholog is 99%.

Group of orthologs #137. Best score 221 bits
Score difference with first non-orthologous sequence - A.gossypii:221 B.japonicum:221

Q75C28              	100.00%		Q89W91              	100.00%
Bootstrap support for Q75C28 as seed ortholog is 100%.
Bootstrap support for Q89W91 as seed ortholog is 100%.

Group of orthologs #138. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:76 B.japonicum:78

Q75AE9              	100.00%		P70920              	100.00%
Q752E7              	41.24%		
Bootstrap support for Q75AE9 as seed ortholog is 97%.
Bootstrap support for P70920 as seed ortholog is 92%.

Group of orthologs #139. Best score 217 bits
Score difference with first non-orthologous sequence - A.gossypii:217 B.japonicum:217

Q750E2              	100.00%		Q89DY5              	100.00%
Bootstrap support for Q750E2 as seed ortholog is 100%.
Bootstrap support for Q89DY5 as seed ortholog is 100%.

Group of orthologs #140. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:215

Q74Z01              	100.00%		Q89CP1              	100.00%
Q74Z02              	67.96%		
Bootstrap support for Q74Z01 as seed ortholog is 77%.
Bootstrap support for Q89CP1 as seed ortholog is 100%.

Group of orthologs #141. Best score 215 bits
Score difference with first non-orthologous sequence - A.gossypii:147 B.japonicum:215

Q75BN8              	100.00%		Q89KM8              	100.00%
Bootstrap support for Q75BN8 as seed ortholog is 99%.
Bootstrap support for Q89KM8 as seed ortholog is 100%.

Group of orthologs #142. Best score 213 bits
Score difference with first non-orthologous sequence - A.gossypii:213 B.japonicum:213

Q758U0              	100.00%		Q89KR5              	100.00%
Bootstrap support for Q758U0 as seed ortholog is 100%.
Bootstrap support for Q89KR5 as seed ortholog is 100%.

Group of orthologs #143. Best score 211 bits
Score difference with first non-orthologous sequence - A.gossypii:211 B.japonicum:211

Q752N9              	100.00%		Q89DR8              	100.00%
Bootstrap support for Q752N9 as seed ortholog is 100%.
Bootstrap support for Q89DR8 as seed ortholog is 100%.

Group of orthologs #144. Best score 210 bits
Score difference with first non-orthologous sequence - A.gossypii:210 B.japonicum:210

Q75E05              	100.00%		Q89WD0              	100.00%
Bootstrap support for Q75E05 as seed ortholog is 100%.
Bootstrap support for Q89WD0 as seed ortholog is 100%.

Group of orthologs #145. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 B.japonicum:209

Q75BR1              	100.00%		Q89EH0              	100.00%
Bootstrap support for Q75BR1 as seed ortholog is 100%.
Bootstrap support for Q89EH0 as seed ortholog is 100%.

Group of orthologs #146. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 B.japonicum:56

Q75BN9              	100.00%		Q89L17              	100.00%
Bootstrap support for Q75BN9 as seed ortholog is 100%.
Bootstrap support for Q89L17 as seed ortholog is 86%.

Group of orthologs #147. Best score 209 bits
Score difference with first non-orthologous sequence - A.gossypii:209 B.japonicum:209

Q75D31              	100.00%		Q89M63              	100.00%
Bootstrap support for Q75D31 as seed ortholog is 100%.
Bootstrap support for Q89M63 as seed ortholog is 100%.

Group of orthologs #148. Best score 208 bits
Score difference with first non-orthologous sequence - A.gossypii:77 B.japonicum:208

Q74ZW3              	100.00%		Q89MP9              	100.00%
Bootstrap support for Q74ZW3 as seed ortholog is 94%.
Bootstrap support for Q89MP9 as seed ortholog is 100%.

Group of orthologs #149. Best score 207 bits
Score difference with first non-orthologous sequence - A.gossypii:207 B.japonicum:207

Q754N5              	100.00%		Q89WR5              	100.00%
Q75EJ7              	17.11%		
Bootstrap support for Q754N5 as seed ortholog is 100%.
Bootstrap support for Q89WR5 as seed ortholog is 100%.

Group of orthologs #150. Best score 204 bits
Score difference with first non-orthologous sequence - A.gossypii:30 B.japonicum:204

Q74Z38              	100.00%		Q89JH5              	100.00%
Bootstrap support for Q74Z38 as seed ortholog is 82%.
Bootstrap support for Q89JH5 as seed ortholog is 100%.

Group of orthologs #151. Best score 203 bits
Score difference with first non-orthologous sequence - A.gossypii:6 B.japonicum:203

Q75B34              	100.00%		P94319              	100.00%
Q755U1              	9.94%		
Bootstrap support for Q75B34 as seed ortholog is 57%.
Alternative seed ortholog is Q752R6 (6 bits away from this cluster)
Bootstrap support for P94319 as seed ortholog is 100%.

Group of orthologs #152. Best score 202 bits
Score difference with first non-orthologous sequence - A.gossypii:202 B.japonicum:151

Q75G34              	100.00%		H7C6E2              	100.00%
Bootstrap support for Q75G34 as seed ortholog is 100%.
Bootstrap support for H7C6E2 as seed ortholog is 99%.

Group of orthologs #153. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 B.japonicum:201

Q751D7              	100.00%		Q89DB8              	100.00%
Bootstrap support for Q751D7 as seed ortholog is 100%.
Bootstrap support for Q89DB8 as seed ortholog is 100%.

Group of orthologs #154. Best score 201 bits
Score difference with first non-orthologous sequence - A.gossypii:201 B.japonicum:201

Q75EN8              	100.00%		Q89X41              	100.00%
Bootstrap support for Q75EN8 as seed ortholog is 100%.
Bootstrap support for Q89X41 as seed ortholog is 100%.

Group of orthologs #155. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 B.japonicum:198

Q750Z7              	100.00%		Q89SK1              	100.00%
Bootstrap support for Q750Z7 as seed ortholog is 100%.
Bootstrap support for Q89SK1 as seed ortholog is 100%.

Group of orthologs #156. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 B.japonicum:82

Q758C2              	100.00%		Q89NN3              	100.00%
Bootstrap support for Q758C2 as seed ortholog is 100%.
Bootstrap support for Q89NN3 as seed ortholog is 97%.

Group of orthologs #157. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 B.japonicum:37

Q753N0              	100.00%		Q9AMR9              	100.00%
Bootstrap support for Q753N0 as seed ortholog is 100%.
Bootstrap support for Q9AMR9 as seed ortholog is 83%.

Group of orthologs #158. Best score 198 bits
Score difference with first non-orthologous sequence - A.gossypii:198 B.japonicum:198

Q756G4              	100.00%		Q89X89              	100.00%
Bootstrap support for Q756G4 as seed ortholog is 100%.
Bootstrap support for Q89X89 as seed ortholog is 100%.

Group of orthologs #159. Best score 196 bits
Score difference with first non-orthologous sequence - A.gossypii:196 B.japonicum:196

Q750E0              	100.00%		P45622              	100.00%
Bootstrap support for Q750E0 as seed ortholog is 100%.
Bootstrap support for P45622 as seed ortholog is 100%.

Group of orthologs #160. Best score 194 bits
Score difference with first non-orthologous sequence - A.gossypii:194 B.japonicum:194

P41752              	100.00%		Q89UE2              	100.00%
Q750T4              	15.16%		
Q759Q2              	5.05%		
Bootstrap support for P41752 as seed ortholog is 100%.
Bootstrap support for Q89UE2 as seed ortholog is 100%.

Group of orthologs #161. Best score 193 bits
Score difference with first non-orthologous sequence - A.gossypii:193 B.japonicum:193

Q750Y8              	100.00%		Q89KU3              	100.00%
Bootstrap support for Q750Y8 as seed ortholog is 100%.
Bootstrap support for Q89KU3 as seed ortholog is 100%.

Group of orthologs #162. Best score 192 bits
Score difference with first non-orthologous sequence - A.gossypii:69 B.japonicum:35

Q75F49              	100.00%		Q89R90              	100.00%
Bootstrap support for Q75F49 as seed ortholog is 91%.
Bootstrap support for Q89R90 as seed ortholog is 75%.

Group of orthologs #163. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 B.japonicum:191

Q75AC3              	100.00%		Q89NU2              	100.00%
Q754X6              	13.67%		
Bootstrap support for Q75AC3 as seed ortholog is 100%.
Bootstrap support for Q89NU2 as seed ortholog is 100%.

Group of orthologs #164. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 B.japonicum:191

Q755E6              	100.00%		Q89MQ0              	100.00%
Bootstrap support for Q755E6 as seed ortholog is 100%.
Bootstrap support for Q89MQ0 as seed ortholog is 100%.

Group of orthologs #165. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 B.japonicum:191

Q750C5              	100.00%		Q89SC2              	100.00%
Bootstrap support for Q750C5 as seed ortholog is 100%.
Bootstrap support for Q89SC2 as seed ortholog is 100%.

Group of orthologs #166. Best score 191 bits
Score difference with first non-orthologous sequence - A.gossypii:191 B.japonicum:191

Q75EY9              	100.00%		Q89X86              	100.00%
Bootstrap support for Q75EY9 as seed ortholog is 100%.
Bootstrap support for Q89X86 as seed ortholog is 100%.

Group of orthologs #167. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:190 B.japonicum:138

Q754H4              	100.00%		Q89VE8              	100.00%
Bootstrap support for Q754H4 as seed ortholog is 100%.
Bootstrap support for Q89VE8 as seed ortholog is 99%.

Group of orthologs #168. Best score 190 bits
Score difference with first non-orthologous sequence - A.gossypii:20 B.japonicum:9

Q75AY4              	100.00%		Q89RM2              	100.00%
Bootstrap support for Q75AY4 as seed ortholog is 69%.
Alternative seed ortholog is Q754D3 (20 bits away from this cluster)
Bootstrap support for Q89RM2 as seed ortholog is 47%.
Alternative seed ortholog is Q89R56 (9 bits away from this cluster)

Group of orthologs #169. Best score 188 bits
Score difference with first non-orthologous sequence - A.gossypii:188 B.japonicum:82

Q75CZ3              	100.00%		Q89F70              	100.00%
Bootstrap support for Q75CZ3 as seed ortholog is 100%.
Bootstrap support for Q89F70 as seed ortholog is 98%.

Group of orthologs #170. Best score 187 bits
Score difference with first non-orthologous sequence - A.gossypii:121 B.japonicum:47

Q754I3              	100.00%		Q89FY7              	100.00%
Bootstrap support for Q754I3 as seed ortholog is 95%.
Bootstrap support for Q89FY7 as seed ortholog is 82%.

Group of orthologs #171. Best score 186 bits
Score difference with first non-orthologous sequence - A.gossypii:25 B.japonicum:1

Q75F03              	100.00%		Q89CB3              	100.00%
Bootstrap support for Q75F03 as seed ortholog is 75%.
Bootstrap support for Q89CB3 as seed ortholog is 51%.
Alternative seed ortholog is Q89N44 (1 bits away from this cluster)

Group of orthologs #172. Best score 185 bits
Score difference with first non-orthologous sequence - A.gossypii:127 B.japonicum:185

Q750R4              	100.00%		Q89BI2              	100.00%
Bootstrap support for Q750R4 as seed ortholog is 100%.
Bootstrap support for Q89BI2 as seed ortholog is 100%.

Group of orthologs #173. Best score 184 bits
Score difference with first non-orthologous sequence - A.gossypii:184 B.japonicum:184

Q75AP9              	100.00%		Q89J84              	100.00%
Bootstrap support for Q75AP9 as seed ortholog is 100%.
Bootstrap support for Q89J84 as seed ortholog is 100%.

Group of orthologs #174. Best score 183 bits
Score difference with first non-orthologous sequence - A.gossypii:183 B.japonicum:81

Q754Y9              	100.00%		Q89FG8              	100.00%
Bootstrap support for Q754Y9 as seed ortholog is 100%.
Bootstrap support for Q89FG8 as seed ortholog is 99%.

Group of orthologs #175. Best score 181 bits
Score difference with first non-orthologous sequence - A.gossypii:15 B.japonicum:181

Q753B2              	100.00%		Q89L00              	100.00%
Bootstrap support for Q753B2 as seed ortholog is 64%.
Alternative seed ortholog is Q75DW1 (15 bits away from this cluster)
Bootstrap support for Q89L00 as seed ortholog is 100%.

Group of orthologs #176. Best score 180 bits
Score difference with first non-orthologous sequence - A.gossypii:180 B.japonicum:180

Q74Z71              	100.00%		Q89IW2              	100.00%
Bootstrap support for Q74Z71 as seed ortholog is 100%.
Bootstrap support for Q89IW2 as seed ortholog is 100%.

Group of orthologs #177. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 B.japonicum:179

Q74Z49              	100.00%		Q89KF7              	100.00%
Bootstrap support for Q74Z49 as seed ortholog is 100%.
Bootstrap support for Q89KF7 as seed ortholog is 100%.

Group of orthologs #178. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:90 B.japonicum:179

Q74ZW9              	100.00%		Q89SA9              	100.00%
Bootstrap support for Q74ZW9 as seed ortholog is 98%.
Bootstrap support for Q89SA9 as seed ortholog is 100%.

Group of orthologs #179. Best score 179 bits
Score difference with first non-orthologous sequence - A.gossypii:179 B.japonicum:179

Q753K8              	100.00%		Q89W82              	100.00%
Bootstrap support for Q753K8 as seed ortholog is 100%.
Bootstrap support for Q89W82 as seed ortholog is 100%.

Group of orthologs #180. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:178 B.japonicum:56

Q75D37              	100.00%		Q89MZ4              	100.00%
                    	       		Q9AMS0              	8.68%
Bootstrap support for Q75D37 as seed ortholog is 100%.
Bootstrap support for Q89MZ4 as seed ortholog is 95%.

Group of orthologs #181. Best score 178 bits
Score difference with first non-orthologous sequence - A.gossypii:26 B.japonicum:81

Q74ZY2              	100.00%		Q89QM0              	100.00%
Bootstrap support for Q74ZY2 as seed ortholog is 72%.
Alternative seed ortholog is Q75DQ7 (26 bits away from this cluster)
Bootstrap support for Q89QM0 as seed ortholog is 95%.

Group of orthologs #182. Best score 177 bits
Score difference with first non-orthologous sequence - A.gossypii:116 B.japonicum:38

Q75EA9              	100.00%		Q89R24              	100.00%
                    	       		Q89VR5              	11.53%
                    	       		Q89CD3              	9.83%
                    	       		Q89QE6              	9.38%
                    	       		Q89L37              	8.14%
                    	       		Q89HA9              	7.91%
                    	       		Q89CJ0              	6.67%
                    	       		Q89R21              	6.44%
                    	       		Q89Q01              	5.65%
                    	       		Q89UU0              	5.42%
                    	       		Q89MZ3              	5.08%
                    	       		Q89UT2              	5.08%
Bootstrap support for Q75EA9 as seed ortholog is 99%.
Bootstrap support for Q89R24 as seed ortholog is 81%.

Group of orthologs #183. Best score 176 bits
Score difference with first non-orthologous sequence - A.gossypii:176 B.japonicum:176

Q75B47              	100.00%		Q89WM8              	100.00%
Bootstrap support for Q75B47 as seed ortholog is 100%.
Bootstrap support for Q89WM8 as seed ortholog is 100%.

Group of orthologs #184. Best score 173 bits
Score difference with first non-orthologous sequence - A.gossypii:173 B.japonicum:173

Q753L7              	100.00%		Q89SG4              	100.00%
Bootstrap support for Q753L7 as seed ortholog is 100%.
Bootstrap support for Q89SG4 as seed ortholog is 100%.

Group of orthologs #185. Best score 172 bits
Score difference with first non-orthologous sequence - A.gossypii:172 B.japonicum:101

Q755M7              	100.00%		Q89QY3              	100.00%
                    	       		Q89NI3              	41.77%
                    	       		Q89J29              	38.82%
                    	       		Q89R32              	29.81%
Bootstrap support for Q755M7 as seed ortholog is 100%.
Bootstrap support for Q89QY3 as seed ortholog is 99%.

Group of orthologs #186. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 B.japonicum:171

Q758Q3              	100.00%		Q89S35              	100.00%
Bootstrap support for Q758Q3 as seed ortholog is 100%.
Bootstrap support for Q89S35 as seed ortholog is 100%.

Group of orthologs #187. Best score 171 bits
Score difference with first non-orthologous sequence - A.gossypii:171 B.japonicum:171

Q75EE9              	100.00%		Q89X58              	100.00%
Bootstrap support for Q75EE9 as seed ortholog is 100%.
Bootstrap support for Q89X58 as seed ortholog is 100%.

Group of orthologs #188. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:169 B.japonicum:169

Q753K9              	100.00%		Q89GP7              	100.00%
                    	       		Q89HI1              	7.89%
Bootstrap support for Q753K9 as seed ortholog is 100%.
Bootstrap support for Q89GP7 as seed ortholog is 100%.

Group of orthologs #189. Best score 169 bits
Score difference with first non-orthologous sequence - A.gossypii:44 B.japonicum:14

Q75CM6              	100.00%		Q89GT9              	100.00%
Bootstrap support for Q75CM6 as seed ortholog is 90%.
Bootstrap support for Q89GT9 as seed ortholog is 67%.
Alternative seed ortholog is Q89JN4 (14 bits away from this cluster)

Group of orthologs #190. Best score 168 bits
Score difference with first non-orthologous sequence - A.gossypii:168 B.japonicum:168

Q75A12              	100.00%		Q89RZ7              	100.00%
Bootstrap support for Q75A12 as seed ortholog is 100%.
Bootstrap support for Q89RZ7 as seed ortholog is 100%.

Group of orthologs #191. Best score 167 bits
Score difference with first non-orthologous sequence - A.gossypii:167 B.japonicum:167

Q757S9              	100.00%		P51130              	100.00%
Bootstrap support for Q757S9 as seed ortholog is 100%.
Bootstrap support for P51130 as seed ortholog is 100%.

Group of orthologs #192. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 B.japonicum:102

Q7YFV7              	100.00%		H7C6E5              	100.00%
Bootstrap support for Q7YFV7 as seed ortholog is 100%.
Bootstrap support for H7C6E5 as seed ortholog is 99%.

Group of orthologs #193. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 B.japonicum:166

Q74ZY1              	100.00%		Q89PK7              	100.00%
Bootstrap support for Q74ZY1 as seed ortholog is 100%.
Bootstrap support for Q89PK7 as seed ortholog is 100%.

Group of orthologs #194. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 B.japonicum:166

Q756X5              	100.00%		Q89PA5              	100.00%
Bootstrap support for Q756X5 as seed ortholog is 100%.
Bootstrap support for Q89PA5 as seed ortholog is 100%.

Group of orthologs #195. Best score 166 bits
Score difference with first non-orthologous sequence - A.gossypii:166 B.japonicum:166

Q754W3              	100.00%		Q89WM4              	100.00%
Bootstrap support for Q754W3 as seed ortholog is 100%.
Bootstrap support for Q89WM4 as seed ortholog is 100%.

Group of orthologs #196. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 B.japonicum:165

Q756M8              	100.00%		Q89HT4              	100.00%
Bootstrap support for Q756M8 as seed ortholog is 100%.
Bootstrap support for Q89HT4 as seed ortholog is 100%.

Group of orthologs #197. Best score 165 bits
Score difference with first non-orthologous sequence - A.gossypii:165 B.japonicum:165

Q752Z5              	100.00%		Q8GKS1              	100.00%
Bootstrap support for Q752Z5 as seed ortholog is 100%.
Bootstrap support for Q8GKS1 as seed ortholog is 100%.

Group of orthologs #198. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 B.japonicum:164

Q755M2              	100.00%		Q89IF9              	100.00%
                    	       		Q89S24              	45.85%
Bootstrap support for Q755M2 as seed ortholog is 100%.
Bootstrap support for Q89IF9 as seed ortholog is 100%.

Group of orthologs #199. Best score 164 bits
Score difference with first non-orthologous sequence - A.gossypii:164 B.japonicum:164

Q757S8              	100.00%		Q89XY3              	100.00%
Bootstrap support for Q757S8 as seed ortholog is 100%.
Bootstrap support for Q89XY3 as seed ortholog is 100%.

Group of orthologs #200. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:57 B.japonicum:105

Q750H7              	100.00%		Q89SH9              	100.00%
                    	       		Q89FX9              	41.17%
                    	       		Q89SX0              	36.30%
                    	       		Q89SX2              	34.49%
Bootstrap support for Q750H7 as seed ortholog is 92%.
Bootstrap support for Q89SH9 as seed ortholog is 99%.

Group of orthologs #201. Best score 163 bits
Score difference with first non-orthologous sequence - A.gossypii:163 B.japonicum:163

Q754E1              	100.00%		Q89FE2              	100.00%
Bootstrap support for Q754E1 as seed ortholog is 100%.
Bootstrap support for Q89FE2 as seed ortholog is 100%.

Group of orthologs #202. Best score 161 bits
Score difference with first non-orthologous sequence - A.gossypii:161 B.japonicum:161

Q75EI1              	100.00%		Q89VT4              	100.00%
Bootstrap support for Q75EI1 as seed ortholog is 100%.
Bootstrap support for Q89VT4 as seed ortholog is 100%.

Group of orthologs #203. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 B.japonicum:160

Q75BT4              	100.00%		Q89DI2              	100.00%
Bootstrap support for Q75BT4 as seed ortholog is 100%.
Bootstrap support for Q89DI2 as seed ortholog is 100%.

Group of orthologs #204. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:28 B.japonicum:160

Q75A20              	100.00%		Q89GB0              	100.00%
Bootstrap support for Q75A20 as seed ortholog is 74%.
Alternative seed ortholog is Q755P2 (28 bits away from this cluster)
Bootstrap support for Q89GB0 as seed ortholog is 100%.

Group of orthologs #205. Best score 160 bits
Score difference with first non-orthologous sequence - A.gossypii:160 B.japonicum:15

Q752A0              	100.00%		Q89WC5              	100.00%
Bootstrap support for Q752A0 as seed ortholog is 100%.
Bootstrap support for Q89WC5 as seed ortholog is 64%.
Alternative seed ortholog is Q89Y67 (15 bits away from this cluster)

Group of orthologs #206. Best score 159 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:159

Q758R3              	100.00%		Q89WE2              	100.00%
Bootstrap support for Q758R3 as seed ortholog is 87%.
Bootstrap support for Q89WE2 as seed ortholog is 100%.

Group of orthologs #207. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:31 B.japonicum:24

Q75A66              	100.00%		Q89HM7              	100.00%
                    	       		Q89C69              	16.32%
Bootstrap support for Q75A66 as seed ortholog is 73%.
Alternative seed ortholog is Q75DN5 (31 bits away from this cluster)
Bootstrap support for Q89HM7 as seed ortholog is 65%.
Alternative seed ortholog is Q89UX1 (24 bits away from this cluster)

Group of orthologs #208. Best score 158 bits
Score difference with first non-orthologous sequence - A.gossypii:158 B.japonicum:158

Q757Q6              	100.00%		Q89FD3              	100.00%
Bootstrap support for Q757Q6 as seed ortholog is 100%.
Bootstrap support for Q89FD3 as seed ortholog is 100%.

Group of orthologs #209. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:153 B.japonicum:153

Q75CP9              	100.00%		Q89G42              	100.00%
Bootstrap support for Q75CP9 as seed ortholog is 100%.
Bootstrap support for Q89G42 as seed ortholog is 100%.

Group of orthologs #210. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:75 B.japonicum:153

Q757K8              	100.00%		Q89S74              	100.00%
Bootstrap support for Q757K8 as seed ortholog is 97%.
Bootstrap support for Q89S74 as seed ortholog is 100%.

Group of orthologs #211. Best score 153 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:153

Q75C60              	100.00%		Q89WK1              	100.00%
Bootstrap support for Q75C60 as seed ortholog is 97%.
Bootstrap support for Q89WK1 as seed ortholog is 100%.

Group of orthologs #212. Best score 151 bits
Score difference with first non-orthologous sequence - A.gossypii:151 B.japonicum:151

O94198              	100.00%		Q89SE5              	100.00%
Q750K8              	24.57%		
Bootstrap support for O94198 as seed ortholog is 100%.
Bootstrap support for Q89SE5 as seed ortholog is 100%.

Group of orthologs #213. Best score 150 bits
Score difference with first non-orthologous sequence - A.gossypii:150 B.japonicum:150

Q756M4              	100.00%		P59607              	100.00%
Bootstrap support for Q756M4 as seed ortholog is 100%.
Bootstrap support for P59607 as seed ortholog is 100%.

Group of orthologs #214. Best score 149 bits
Score difference with first non-orthologous sequence - A.gossypii:149 B.japonicum:149

Q756N6              	100.00%		Q89Q35              	100.00%
                    	       		Q89PZ7              	31.89%
                    	       		Q89D30              	16.79%
Bootstrap support for Q756N6 as seed ortholog is 100%.
Bootstrap support for Q89Q35 as seed ortholog is 100%.

Group of orthologs #215. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 B.japonicum:148

Q75CW4              	100.00%		Q89G50              	100.00%
Bootstrap support for Q75CW4 as seed ortholog is 100%.
Bootstrap support for Q89G50 as seed ortholog is 100%.

Group of orthologs #216. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:148 B.japonicum:148

Q75D95              	100.00%		Q89KG7              	100.00%
Bootstrap support for Q75D95 as seed ortholog is 100%.
Bootstrap support for Q89KG7 as seed ortholog is 100%.

Group of orthologs #217. Best score 148 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:148

Q755L1              	100.00%		Q89WW1              	100.00%
Bootstrap support for Q755L1 as seed ortholog is 92%.
Bootstrap support for Q89WW1 as seed ortholog is 100%.

Group of orthologs #218. Best score 147 bits
Score difference with first non-orthologous sequence - A.gossypii:32 B.japonicum:147

Q74ZL1              	100.00%		Q89JA5              	100.00%
Bootstrap support for Q74ZL1 as seed ortholog is 83%.
Bootstrap support for Q89JA5 as seed ortholog is 100%.

Group of orthologs #219. Best score 145 bits
Score difference with first non-orthologous sequence - A.gossypii:62 B.japonicum:12

Q752Y9              	100.00%		Q89V49              	100.00%
                    	       		Q89IN4              	40.04%
                    	       		Q89XK0              	8.48%
Bootstrap support for Q752Y9 as seed ortholog is 74%.
Alternative seed ortholog is Q75D99 (62 bits away from this cluster)
Bootstrap support for Q89V49 as seed ortholog is 56%.
Alternative seed ortholog is Q89CC4 (12 bits away from this cluster)

Group of orthologs #220. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 B.japonicum:77

Q753E0              	100.00%		Q89GA3              	100.00%
Bootstrap support for Q753E0 as seed ortholog is 100%.
Bootstrap support for Q89GA3 as seed ortholog is 92%.

Group of orthologs #221. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 B.japonicum:63

Q752F4              	100.00%		Q89H33              	100.00%
Bootstrap support for Q752F4 as seed ortholog is 100%.
Bootstrap support for Q89H33 as seed ortholog is 90%.

Group of orthologs #222. Best score 144 bits
Score difference with first non-orthologous sequence - A.gossypii:144 B.japonicum:64

Q753P1              	100.00%		Q89S65              	100.00%
Bootstrap support for Q753P1 as seed ortholog is 100%.
Bootstrap support for Q89S65 as seed ortholog is 99%.

Group of orthologs #223. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 B.japonicum:66

Q757C6              	100.00%		Q89CN8              	100.00%
Bootstrap support for Q757C6 as seed ortholog is 100%.
Bootstrap support for Q89CN8 as seed ortholog is 93%.

Group of orthologs #224. Best score 143 bits
Score difference with first non-orthologous sequence - A.gossypii:143 B.japonicum:88

Q75F24              	100.00%		Q89FK9              	100.00%
Bootstrap support for Q75F24 as seed ortholog is 100%.
Bootstrap support for Q89FK9 as seed ortholog is 99%.

Group of orthologs #225. Best score 142 bits
Score difference with first non-orthologous sequence - A.gossypii:142 B.japonicum:142

Q75G39              	100.00%		Q89V68              	100.00%
Bootstrap support for Q75G39 as seed ortholog is 100%.
Bootstrap support for Q89V68 as seed ortholog is 100%.

Group of orthologs #226. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 B.japonicum:141

Q755S2              	100.00%		P94327              	100.00%
Bootstrap support for Q755S2 as seed ortholog is 100%.
Bootstrap support for P94327 as seed ortholog is 100%.

Group of orthologs #227. Best score 141 bits
Score difference with first non-orthologous sequence - A.gossypii:141 B.japonicum:141

Q75BW1              	100.00%		Q89SS3              	100.00%
Bootstrap support for Q75BW1 as seed ortholog is 100%.
Bootstrap support for Q89SS3 as seed ortholog is 100%.

Group of orthologs #228. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 B.japonicum:53

Q75EN5              	100.00%		Q89CM9              	100.00%
Bootstrap support for Q75EN5 as seed ortholog is 100%.
Bootstrap support for Q89CM9 as seed ortholog is 89%.

Group of orthologs #229. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 B.japonicum:139

Q75DM3              	100.00%		Q89IE9              	100.00%
Bootstrap support for Q75DM3 as seed ortholog is 100%.
Bootstrap support for Q89IE9 as seed ortholog is 100%.

Group of orthologs #230. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 B.japonicum:139

Q75E94              	100.00%		Q89RY8              	100.00%
Bootstrap support for Q75E94 as seed ortholog is 100%.
Bootstrap support for Q89RY8 as seed ortholog is 100%.

Group of orthologs #231. Best score 139 bits
Score difference with first non-orthologous sequence - A.gossypii:139 B.japonicum:63

Q75BH8              	100.00%		Q89VV8              	100.00%
Bootstrap support for Q75BH8 as seed ortholog is 100%.
Bootstrap support for Q89VV8 as seed ortholog is 93%.

Group of orthologs #232. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:88 B.japonicum:19

Q75DW3              	100.00%		Q89I97              	100.00%
                    	       		Q89X00              	25.25%
                    	       		Q89IM9              	16.90%
Bootstrap support for Q75DW3 as seed ortholog is 99%.
Bootstrap support for Q89I97 as seed ortholog is 73%.
Alternative seed ortholog is Q89QP5 (19 bits away from this cluster)

Group of orthologs #233. Best score 138 bits
Score difference with first non-orthologous sequence - A.gossypii:138 B.japonicum:138

Q750P5              	100.00%		Q89MN3              	100.00%
Bootstrap support for Q750P5 as seed ortholog is 100%.
Bootstrap support for Q89MN3 as seed ortholog is 100%.

Group of orthologs #234. Best score 137 bits
Score difference with first non-orthologous sequence - A.gossypii:93 B.japonicum:137

Q751C8              	100.00%		Q89J79              	100.00%
Bootstrap support for Q751C8 as seed ortholog is 99%.
Bootstrap support for Q89J79 as seed ortholog is 100%.

Group of orthologs #235. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:136 B.japonicum:136

Q757U9              	100.00%		Q89ES7              	100.00%
Bootstrap support for Q757U9 as seed ortholog is 100%.
Bootstrap support for Q89ES7 as seed ortholog is 100%.

Group of orthologs #236. Best score 136 bits
Score difference with first non-orthologous sequence - A.gossypii:26 B.japonicum:136

Q755E0              	100.00%		Q89N72              	100.00%
Bootstrap support for Q755E0 as seed ortholog is 56%.
Alternative seed ortholog is Q750C1 (26 bits away from this cluster)
Bootstrap support for Q89N72 as seed ortholog is 100%.

Group of orthologs #237. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:135 B.japonicum:135

Q751P9              	100.00%		Q89Y51              	100.00%
                    	       		Q89N69              	27.55%
Bootstrap support for Q751P9 as seed ortholog is 100%.
Bootstrap support for Q89Y51 as seed ortholog is 100%.

Group of orthologs #238. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:61 B.japonicum:135

Q74ZW4              	100.00%		Q89H72              	100.00%
Bootstrap support for Q74ZW4 as seed ortholog is 93%.
Bootstrap support for Q89H72 as seed ortholog is 100%.

Group of orthologs #239. Best score 135 bits
Score difference with first non-orthologous sequence - A.gossypii:14 B.japonicum:135

Q755U7              	100.00%		Q89DE6              	100.00%
Bootstrap support for Q755U7 as seed ortholog is 80%.
Bootstrap support for Q89DE6 as seed ortholog is 100%.

Group of orthologs #240. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 B.japonicum:134

Q74ZI9              	100.00%		Q89RC4              	100.00%
                    	       		Q89FZ3              	8.17%
Bootstrap support for Q74ZI9 as seed ortholog is 100%.
Bootstrap support for Q89RC4 as seed ortholog is 100%.

Group of orthologs #241. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 B.japonicum:134

Q74Z55              	100.00%		P54924              	100.00%
Bootstrap support for Q74Z55 as seed ortholog is 100%.
Bootstrap support for P54924 as seed ortholog is 100%.

Group of orthologs #242. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 B.japonicum:134

Q758F3              	100.00%		Q89VB6              	100.00%
Bootstrap support for Q758F3 as seed ortholog is 100%.
Bootstrap support for Q89VB6 as seed ortholog is 100%.

Group of orthologs #243. Best score 134 bits
Score difference with first non-orthologous sequence - A.gossypii:134 B.japonicum:75

Q75CV6              	100.00%		Q89XU5              	100.00%
Bootstrap support for Q75CV6 as seed ortholog is 100%.
Bootstrap support for Q89XU5 as seed ortholog is 99%.

Group of orthologs #244. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 B.japonicum:133

Q752K1              	100.00%		Q89IC0              	100.00%
Bootstrap support for Q752K1 as seed ortholog is 100%.
Bootstrap support for Q89IC0 as seed ortholog is 100%.

Group of orthologs #245. Best score 133 bits
Score difference with first non-orthologous sequence - A.gossypii:133 B.japonicum:133

Q756E2              	100.00%		Q89SB5              	100.00%
Bootstrap support for Q756E2 as seed ortholog is 100%.
Bootstrap support for Q89SB5 as seed ortholog is 100%.

Group of orthologs #246. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 B.japonicum:132

Q750K4              	100.00%		Q89U83              	100.00%
Bootstrap support for Q750K4 as seed ortholog is 100%.
Bootstrap support for Q89U83 as seed ortholog is 100%.

Group of orthologs #247. Best score 132 bits
Score difference with first non-orthologous sequence - A.gossypii:132 B.japonicum:132

Q758C7              	100.00%		Q89NP4              	100.00%
Bootstrap support for Q758C7 as seed ortholog is 100%.
Bootstrap support for Q89NP4 as seed ortholog is 100%.

Group of orthologs #248. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 B.japonicum:81

Q752X6              	100.00%		Q89VJ4              	100.00%
Q759L4              	31.63%		
Bootstrap support for Q752X6 as seed ortholog is 100%.
Bootstrap support for Q89VJ4 as seed ortholog is 94%.

Group of orthologs #249. Best score 131 bits
Score difference with first non-orthologous sequence - A.gossypii:131 B.japonicum:131

Q756L5              	100.00%		P94326              	100.00%
Bootstrap support for Q756L5 as seed ortholog is 100%.
Bootstrap support for P94326 as seed ortholog is 100%.

Group of orthologs #250. Best score 130 bits
Score difference with first non-orthologous sequence - A.gossypii:130 B.japonicum:130

Q75DI0              	100.00%		Q89W93              	100.00%
Bootstrap support for Q75DI0 as seed ortholog is 100%.
Bootstrap support for Q89W93 as seed ortholog is 100%.

Group of orthologs #251. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 B.japonicum:129

O74267              	100.00%		Q89N26              	100.00%
Q74ZK0              	31.22%		Q89ID2              	10.93%
Bootstrap support for O74267 as seed ortholog is 100%.
Bootstrap support for Q89N26 as seed ortholog is 100%.

Group of orthologs #252. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 B.japonicum:40

Q752C7              	100.00%		Q89WS5              	100.00%
                    	       		Q89LF8              	10.02%
Bootstrap support for Q752C7 as seed ortholog is 100%.
Bootstrap support for Q89WS5 as seed ortholog is 86%.

Group of orthologs #253. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 B.japonicum:129

Q751U0              	100.00%		Q89MX0              	100.00%
Bootstrap support for Q751U0 as seed ortholog is 100%.
Bootstrap support for Q89MX0 as seed ortholog is 100%.

Group of orthologs #254. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:129 B.japonicum:129

Q75DL1              	100.00%		Q89KP3              	100.00%
Bootstrap support for Q75DL1 as seed ortholog is 100%.
Bootstrap support for Q89KP3 as seed ortholog is 100%.

Group of orthologs #255. Best score 129 bits
Score difference with first non-orthologous sequence - A.gossypii:45 B.japonicum:129

Q752Q7              	100.00%		Q89WI1              	100.00%
Bootstrap support for Q752Q7 as seed ortholog is 83%.
Bootstrap support for Q89WI1 as seed ortholog is 100%.

Group of orthologs #256. Best score 128 bits
Score difference with first non-orthologous sequence - A.gossypii:128 B.japonicum:128

Q750D1              	100.00%		Q89N86              	100.00%
Bootstrap support for Q750D1 as seed ortholog is 100%.
Bootstrap support for Q89N86 as seed ortholog is 100%.

Group of orthologs #257. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 B.japonicum:127

Q757K9              	100.00%		Q89KP7              	100.00%
Q75DN9              	9.50%		Q89W41              	17.74%
Bootstrap support for Q757K9 as seed ortholog is 100%.
Bootstrap support for Q89KP7 as seed ortholog is 100%.

Group of orthologs #258. Best score 127 bits
Score difference with first non-orthologous sequence - A.gossypii:127 B.japonicum:127

Q756F7              	100.00%		Q89MV4              	100.00%
Bootstrap support for Q756F7 as seed ortholog is 100%.
Bootstrap support for Q89MV4 as seed ortholog is 100%.

Group of orthologs #259. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 B.japonicum:126

Q759V8              	100.00%		Q89FD9              	100.00%
Bootstrap support for Q759V8 as seed ortholog is 100%.
Bootstrap support for Q89FD9 as seed ortholog is 100%.

Group of orthologs #260. Best score 126 bits
Score difference with first non-orthologous sequence - A.gossypii:126 B.japonicum:126

Q74ZA5              	100.00%		Q89UE0              	100.00%
Bootstrap support for Q74ZA5 as seed ortholog is 100%.
Bootstrap support for Q89UE0 as seed ortholog is 100%.

Group of orthologs #261. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 B.japonicum:85

Q752V7              	100.00%		H7C7U0              	100.00%
Bootstrap support for Q752V7 as seed ortholog is 100%.
Bootstrap support for H7C7U0 as seed ortholog is 99%.

Group of orthologs #262. Best score 125 bits
Score difference with first non-orthologous sequence - A.gossypii:125 B.japonicum:125

Q751B3              	100.00%		Q89K08              	100.00%
Bootstrap support for Q751B3 as seed ortholog is 100%.
Bootstrap support for Q89K08 as seed ortholog is 100%.

Group of orthologs #263. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 B.japonicum:124

Q74ZC0              	100.00%		Q89QK9              	100.00%
Bootstrap support for Q74ZC0 as seed ortholog is 100%.
Bootstrap support for Q89QK9 as seed ortholog is 100%.

Group of orthologs #264. Best score 124 bits
Score difference with first non-orthologous sequence - A.gossypii:124 B.japonicum:124

Q75DY0              	100.00%		Q89SK2              	100.00%
Bootstrap support for Q75DY0 as seed ortholog is 100%.
Bootstrap support for Q89SK2 as seed ortholog is 100%.

Group of orthologs #265. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 B.japonicum:123

Q75C11              	100.00%		P56939              	100.00%
Bootstrap support for Q75C11 as seed ortholog is 100%.
Bootstrap support for P56939 as seed ortholog is 100%.

Group of orthologs #266. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 B.japonicum:123

Q758N0              	100.00%		Q89IJ5              	100.00%
Bootstrap support for Q758N0 as seed ortholog is 100%.
Bootstrap support for Q89IJ5 as seed ortholog is 100%.

Group of orthologs #267. Best score 123 bits
Score difference with first non-orthologous sequence - A.gossypii:123 B.japonicum:123

Q75CJ6              	100.00%		Q89NS9              	100.00%
Bootstrap support for Q75CJ6 as seed ortholog is 100%.
Bootstrap support for Q89NS9 as seed ortholog is 100%.

Group of orthologs #268. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 B.japonicum:49

Q8NJR2              	100.00%		Q89IM7              	100.00%
                    	       		Q89BL5              	25.00%
                    	       		Q89N11              	11.67%
                    	       		Q89R33              	10.28%
                    	       		Q89S97              	5.56%
Bootstrap support for Q8NJR2 as seed ortholog is 100%.
Bootstrap support for Q89IM7 as seed ortholog is 89%.

Group of orthologs #269. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:121 B.japonicum:121

Q75CU5              	100.00%		Q89X73              	100.00%
Bootstrap support for Q75CU5 as seed ortholog is 100%.
Bootstrap support for Q89X73 as seed ortholog is 100%.

Group of orthologs #270. Best score 121 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:54

Q75F17              	100.00%		Q89V05              	100.00%
Bootstrap support for Q75F17 as seed ortholog is 93%.
Bootstrap support for Q89V05 as seed ortholog is 92%.

Group of orthologs #271. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:35 B.japonicum:7

Q751N6              	100.00%		Q89UI9              	100.00%
Q750B0              	18.64%		Q89FJ1              	35.46%
Q75CJ1              	15.13%		Q89PZ0              	28.54%
                    	       		Q89U16              	25.91%
                    	       		Q89VK6              	16.36%
                    	       		Q89KL3              	11.86%
                    	       		Q89R99              	9.00%
Bootstrap support for Q751N6 as seed ortholog is 95%.
Bootstrap support for Q89UI9 as seed ortholog is 56%.
Alternative seed ortholog is Q89CC4 (7 bits away from this cluster)

Group of orthologs #272. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 B.japonicum:118

Q75C01              	100.00%		Q79V15              	100.00%
Bootstrap support for Q75C01 as seed ortholog is 100%.
Bootstrap support for Q79V15 as seed ortholog is 100%.

Group of orthologs #273. Best score 118 bits
Score difference with first non-orthologous sequence - A.gossypii:118 B.japonicum:118

Q75A65              	100.00%		Q89IC8              	100.00%
Bootstrap support for Q75A65 as seed ortholog is 100%.
Bootstrap support for Q89IC8 as seed ortholog is 100%.

Group of orthologs #274. Best score 117 bits
Score difference with first non-orthologous sequence - A.gossypii:117 B.japonicum:117

Q758R4              	100.00%		Q89S41              	100.00%
Bootstrap support for Q758R4 as seed ortholog is 100%.
Bootstrap support for Q89S41 as seed ortholog is 100%.

Group of orthologs #275. Best score 116 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:116

Q75AK1              	100.00%		Q89PY3              	100.00%
Bootstrap support for Q75AK1 as seed ortholog is 97%.
Bootstrap support for Q89PY3 as seed ortholog is 100%.

Group of orthologs #276. Best score 114 bits
Score difference with first non-orthologous sequence - A.gossypii:114 B.japonicum:29

Q752F0              	100.00%		H7C6L1              	100.00%
Bootstrap support for Q752F0 as seed ortholog is 100%.
Bootstrap support for H7C6L1 as seed ortholog is 85%.

Group of orthologs #277. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 B.japonicum:113

Q75B26              	100.00%		Q89GX0              	100.00%
                    	       		Q89UL9              	10.03%
Bootstrap support for Q75B26 as seed ortholog is 100%.
Bootstrap support for Q89GX0 as seed ortholog is 100%.

Group of orthologs #278. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:18

Q752L3              	100.00%		Q89P43              	100.00%
                    	       		Q89P57              	60.53%
Bootstrap support for Q752L3 as seed ortholog is 92%.
Bootstrap support for Q89P43 as seed ortholog is 69%.
Alternative seed ortholog is Q89GQ7 (18 bits away from this cluster)

Group of orthologs #279. Best score 113 bits
Score difference with first non-orthologous sequence - A.gossypii:113 B.japonicum:113

Q75A09              	100.00%		Q89XU2              	100.00%
Bootstrap support for Q75A09 as seed ortholog is 100%.
Bootstrap support for Q89XU2 as seed ortholog is 100%.

Group of orthologs #280. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 B.japonicum:112

Q751W7              	100.00%		Q89EM9              	100.00%
                    	       		Q89HY4              	20.43%
Bootstrap support for Q751W7 as seed ortholog is 100%.
Bootstrap support for Q89EM9 as seed ortholog is 100%.

Group of orthologs #281. Best score 112 bits
Score difference with first non-orthologous sequence - A.gossypii:112 B.japonicum:112

Q75E21              	100.00%		Q89NR9              	100.00%
Bootstrap support for Q75E21 as seed ortholog is 100%.
Bootstrap support for Q89NR9 as seed ortholog is 100%.

Group of orthologs #282. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 B.japonicum:111

Q75ED1              	100.00%		Q89T21              	100.00%
                    	       		Q89BC5              	6.31%
Bootstrap support for Q75ED1 as seed ortholog is 100%.
Bootstrap support for Q89T21 as seed ortholog is 100%.

Group of orthologs #283. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 B.japonicum:111

Q75E17              	100.00%		Q89J69              	100.00%
Bootstrap support for Q75E17 as seed ortholog is 100%.
Bootstrap support for Q89J69 as seed ortholog is 100%.

Group of orthologs #284. Best score 111 bits
Score difference with first non-orthologous sequence - A.gossypii:111 B.japonicum:111

Q759N6              	100.00%		Q89T40              	100.00%
Bootstrap support for Q759N6 as seed ortholog is 100%.
Bootstrap support for Q89T40 as seed ortholog is 100%.

Group of orthologs #285. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 B.japonicum:110

Q754Q0              	100.00%		Q89FR8              	100.00%
Bootstrap support for Q754Q0 as seed ortholog is 100%.
Bootstrap support for Q89FR8 as seed ortholog is 100%.

Group of orthologs #286. Best score 110 bits
Score difference with first non-orthologous sequence - A.gossypii:110 B.japonicum:110

Q753Q5              	100.00%		Q89KE4              	100.00%
Bootstrap support for Q753Q5 as seed ortholog is 100%.
Bootstrap support for Q89KE4 as seed ortholog is 100%.

Group of orthologs #287. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:109 B.japonicum:109

Q756A5              	100.00%		Q89M06              	100.00%
Q750C0              	11.67%		
Bootstrap support for Q756A5 as seed ortholog is 100%.
Bootstrap support for Q89M06 as seed ortholog is 100%.

Group of orthologs #288. Best score 109 bits
Score difference with first non-orthologous sequence - A.gossypii:49 B.japonicum:13

Q75E33              	100.00%		Q89R30              	100.00%
                    	       		Q89JK6              	5.71%
Bootstrap support for Q75E33 as seed ortholog is 94%.
Bootstrap support for Q89R30 as seed ortholog is 36%.
Alternative seed ortholog is Q89X01 (13 bits away from this cluster)

Group of orthologs #289. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 B.japonicum:108

Q74ZG6              	100.00%		Q89K79              	100.00%
Bootstrap support for Q74ZG6 as seed ortholog is 100%.
Bootstrap support for Q89K79 as seed ortholog is 100%.

Group of orthologs #290. Best score 108 bits
Score difference with first non-orthologous sequence - A.gossypii:108 B.japonicum:108

Q75D36              	100.00%		Q89X42              	100.00%
Bootstrap support for Q75D36 as seed ortholog is 100%.
Bootstrap support for Q89X42 as seed ortholog is 100%.

Group of orthologs #291. Best score 107 bits
Score difference with first non-orthologous sequence - A.gossypii:107 B.japonicum:107

Q753T7              	100.00%		Q89EN0              	100.00%
Bootstrap support for Q753T7 as seed ortholog is 100%.
Bootstrap support for Q89EN0 as seed ortholog is 100%.

Group of orthologs #292. Best score 106 bits
Score difference with first non-orthologous sequence - A.gossypii:106 B.japonicum:11

Q754P8              	100.00%		Q89HQ7              	100.00%
                    	       		Q89FA1              	33.24%
Bootstrap support for Q754P8 as seed ortholog is 100%.
Bootstrap support for Q89HQ7 as seed ortholog is 61%.
Alternative seed ortholog is Q89CA6 (11 bits away from this cluster)

Group of orthologs #293. Best score 105 bits
Score difference with first non-orthologous sequence - A.gossypii:105 B.japonicum:105

Q754M0              	100.00%		Q89E48              	100.00%
Bootstrap support for Q754M0 as seed ortholog is 100%.
Bootstrap support for Q89E48 as seed ortholog is 100%.

Group of orthologs #294. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 B.japonicum:104

Q757C2              	100.00%		Q89DA2              	100.00%
Q75CE2              	6.95%		Q89X10              	24.58%
Bootstrap support for Q757C2 as seed ortholog is 100%.
Bootstrap support for Q89DA2 as seed ortholog is 100%.

Group of orthologs #295. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:36 B.japonicum:104

Q752Y1              	100.00%		Q89IY8              	100.00%
                    	       		Q89II9              	5.38%
Bootstrap support for Q752Y1 as seed ortholog is 75%.
Bootstrap support for Q89IY8 as seed ortholog is 100%.

Group of orthologs #296. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 B.japonicum:104

Q75EN2              	100.00%		Q89MG0              	100.00%
Q757T8              	11.53%		
Bootstrap support for Q75EN2 as seed ortholog is 100%.
Bootstrap support for Q89MG0 as seed ortholog is 100%.

Group of orthologs #297. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 B.japonicum:42

Q759W2              	100.00%		Q89CM3              	100.00%
Bootstrap support for Q759W2 as seed ortholog is 100%.
Bootstrap support for Q89CM3 as seed ortholog is 90%.

Group of orthologs #298. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 B.japonicum:104

Q75ET7              	100.00%		Q89G46              	100.00%
Bootstrap support for Q75ET7 as seed ortholog is 100%.
Bootstrap support for Q89G46 as seed ortholog is 100%.

Group of orthologs #299. Best score 104 bits
Score difference with first non-orthologous sequence - A.gossypii:104 B.japonicum:104

Q75DD1              	100.00%		Q89MS3              	100.00%
Bootstrap support for Q75DD1 as seed ortholog is 100%.
Bootstrap support for Q89MS3 as seed ortholog is 100%.

Group of orthologs #300. Best score 103 bits
Score difference with first non-orthologous sequence - A.gossypii:103 B.japonicum:103

Q756C6              	100.00%		Q89G43              	100.00%
Bootstrap support for Q756C6 as seed ortholog is 100%.
Bootstrap support for Q89G43 as seed ortholog is 100%.

Group of orthologs #301. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 B.japonicum:102

Q75C14              	100.00%		H7C7R4              	100.00%
Q75C44              	18.28%		
Bootstrap support for Q75C14 as seed ortholog is 100%.
Bootstrap support for H7C7R4 as seed ortholog is 100%.

Group of orthologs #302. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 B.japonicum:102

Q752M6              	100.00%		Q89S00              	100.00%
Q74ZN1              	38.77%		
Bootstrap support for Q752M6 as seed ortholog is 100%.
Bootstrap support for Q89S00 as seed ortholog is 100%.

Group of orthologs #303. Best score 102 bits
Score difference with first non-orthologous sequence - A.gossypii:102 B.japonicum:102

Q755F3              	100.00%		Q89IM3              	100.00%
Bootstrap support for Q755F3 as seed ortholog is 100%.
Bootstrap support for Q89IM3 as seed ortholog is 100%.

Group of orthologs #304. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 B.japonicum:101

Q759X1              	100.00%		Q89X59              	100.00%
Q759M4              	35.29%		
Q75AT4              	20.40%		
Bootstrap support for Q759X1 as seed ortholog is 100%.
Bootstrap support for Q89X59 as seed ortholog is 100%.

Group of orthologs #305. Best score 101 bits
Score difference with first non-orthologous sequence - A.gossypii:101 B.japonicum:101

Q75AL3              	100.00%		H7C6R8              	100.00%
Bootstrap support for Q75AL3 as seed ortholog is 100%.
Bootstrap support for H7C6R8 as seed ortholog is 100%.

Group of orthologs #306. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 B.japonicum:18

Q752H4              	100.00%		Q89HK2              	100.00%
Bootstrap support for Q752H4 as seed ortholog is 100%.
Bootstrap support for Q89HK2 as seed ortholog is 71%.
Alternative seed ortholog is Q89HL0 (18 bits away from this cluster)

Group of orthologs #307. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 B.japonicum:100

Q758Y2              	100.00%		Q89I87              	100.00%
Bootstrap support for Q758Y2 as seed ortholog is 100%.
Bootstrap support for Q89I87 as seed ortholog is 100%.

Group of orthologs #308. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 B.japonicum:100

Q758M0              	100.00%		Q89UD6              	100.00%
Bootstrap support for Q758M0 as seed ortholog is 100%.
Bootstrap support for Q89UD6 as seed ortholog is 100%.

Group of orthologs #309. Best score 100 bits
Score difference with first non-orthologous sequence - A.gossypii:100 B.japonicum:100

Q75C33              	100.00%		Q89XT5              	100.00%
Bootstrap support for Q75C33 as seed ortholog is 100%.
Bootstrap support for Q89XT5 as seed ortholog is 100%.

Group of orthologs #310. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 B.japonicum:99

Q757W1              	100.00%		Q89W72              	100.00%
Q756M0              	21.77%		
Q75EZ1              	17.18%		
Bootstrap support for Q757W1 as seed ortholog is 100%.
Bootstrap support for Q89W72 as seed ortholog is 100%.

Group of orthologs #311. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:25 B.japonicum:99

Q756F9              	100.00%		H7C7V2              	100.00%
Bootstrap support for Q756F9 as seed ortholog is 82%.
Bootstrap support for H7C7V2 as seed ortholog is 100%.

Group of orthologs #312. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 B.japonicum:99

Q75E54              	100.00%		H7C6K1              	100.00%
Bootstrap support for Q75E54 as seed ortholog is 100%.
Bootstrap support for H7C6K1 as seed ortholog is 100%.

Group of orthologs #313. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 B.japonicum:99

Q75D55              	100.00%		Q89DI5              	100.00%
Bootstrap support for Q75D55 as seed ortholog is 100%.
Bootstrap support for Q89DI5 as seed ortholog is 100%.

Group of orthologs #314. Best score 99 bits
Score difference with first non-orthologous sequence - A.gossypii:99 B.japonicum:99

Q759G5              	100.00%		Q89WW0              	100.00%
Bootstrap support for Q759G5 as seed ortholog is 100%.
Bootstrap support for Q89WW0 as seed ortholog is 100%.

Group of orthologs #315. Best score 98 bits
Score difference with first non-orthologous sequence - A.gossypii:16 B.japonicum:98

Q759W0              	100.00%		Q89VZ9              	100.00%
Bootstrap support for Q759W0 as seed ortholog is 63%.
Alternative seed ortholog is Q75DH3 (16 bits away from this cluster)
Bootstrap support for Q89VZ9 as seed ortholog is 100%.

Group of orthologs #316. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:34 B.japonicum:10

Q755Z4              	100.00%		Q89G53              	100.00%
Bootstrap support for Q755Z4 as seed ortholog is 87%.
Bootstrap support for Q89G53 as seed ortholog is 64%.
Alternative seed ortholog is Q89WX4 (10 bits away from this cluster)

Group of orthologs #317. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:34 B.japonicum:96

Q75DP6              	100.00%		Q89SL1              	100.00%
Bootstrap support for Q75DP6 as seed ortholog is 72%.
Alternative seed ortholog is Q75DZ9 (34 bits away from this cluster)
Bootstrap support for Q89SL1 as seed ortholog is 100%.

Group of orthologs #318. Best score 96 bits
Score difference with first non-orthologous sequence - A.gossypii:96 B.japonicum:96

Q75B73              	100.00%		Q89WQ5              	100.00%
Bootstrap support for Q75B73 as seed ortholog is 100%.
Bootstrap support for Q89WQ5 as seed ortholog is 100%.

Group of orthologs #319. Best score 95 bits
Score difference with first non-orthologous sequence - A.gossypii:19 B.japonicum:95

Q75DM0              	100.00%		Q89IV2              	100.00%
Q75CJ2              	12.39%		
Bootstrap support for Q75DM0 as seed ortholog is 66%.
Alternative seed ortholog is Q752A7 (19 bits away from this cluster)
Bootstrap support for Q89IV2 as seed ortholog is 100%.

Group of orthologs #320. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 B.japonicum:4

Q753F4              	100.00%		Q45233              	100.00%
Bootstrap support for Q753F4 as seed ortholog is 100%.
Bootstrap support for Q45233 as seed ortholog is 75%.

Group of orthologs #321. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:94 B.japonicum:94

Q74ZX8              	100.00%		Q89J70              	100.00%
Bootstrap support for Q74ZX8 as seed ortholog is 100%.
Bootstrap support for Q89J70 as seed ortholog is 100%.

Group of orthologs #322. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:29 B.japonicum:94

Q757X9              	100.00%		Q89J94              	100.00%
Bootstrap support for Q757X9 as seed ortholog is 88%.
Bootstrap support for Q89J94 as seed ortholog is 100%.

Group of orthologs #323. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:42 B.japonicum:94

Q75AQ0              	100.00%		Q89J99              	100.00%
Bootstrap support for Q75AQ0 as seed ortholog is 94%.
Bootstrap support for Q89J99 as seed ortholog is 100%.

Group of orthologs #324. Best score 94 bits
Score difference with first non-orthologous sequence - A.gossypii:35 B.japonicum:94

Q74ZI0              	100.00%		Q89WD1              	100.00%
Bootstrap support for Q74ZI0 as seed ortholog is 76%.
Bootstrap support for Q89WD1 as seed ortholog is 100%.

Group of orthologs #325. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 B.japonicum:20

Q751S7              	100.00%		Q89UK3              	100.00%
Bootstrap support for Q751S7 as seed ortholog is 100%.
Bootstrap support for Q89UK3 as seed ortholog is 43%.
Alternative seed ortholog is Q89HT7 (20 bits away from this cluster)

Group of orthologs #326. Best score 93 bits
Score difference with first non-orthologous sequence - A.gossypii:93 B.japonicum:93

Q75F43              	100.00%		Q9RM98              	100.00%
Bootstrap support for Q75F43 as seed ortholog is 100%.
Bootstrap support for Q9RM98 as seed ortholog is 100%.

Group of orthologs #327. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:45 B.japonicum:14

Q75CX5              	81.94%		Q89HL5              	100.00%
Q75DB2              	100.00%		Q89M15              	100.00%
Q75DB1              	80.37%		Q89YC8              	22.88%
Q75CX6              	65.97%		Q89J40              	15.33%
Q75BV0              	33.51%		Q89LE8              	14.87%
                    	       		Q89P10              	14.42%
                    	       		Q89UV5              	13.96%
                    	       		Q89PN1              	13.85%
                    	       		Q89W00              	12.13%
                    	       		Q89EC2              	11.21%
                    	       		Q89K11              	10.98%
                    	       		Q45219              	10.77%
                    	       		Q89HU1              	10.30%
                    	       		Q89UK7              	10.07%
                    	       		Q89QU6              	10.00%
                    	       		Q89P11              	9.38%
                    	       		Q89NC8              	9.38%
                    	       		Q89V28              	9.15%
                    	       		Q89FM8              	8.92%
                    	       		Q89BM8              	8.72%
                    	       		Q89D76              	8.72%
                    	       		Q89PZ5              	8.47%
                    	       		Q89N51              	8.47%
                    	       		Q89T83              	8.47%
                    	       		Q89GI6              	8.24%
                    	       		Q89EA2              	8.24%
                    	       		Q89HL7              	7.55%
                    	       		Q89NV8              	7.44%
                    	       		Q89QA5              	7.32%
                    	       		Q89P28              	7.32%
                    	       		Q89E38              	7.32%
                    	       		Q89PM9              	7.09%
                    	       		Q89KQ8              	6.64%
                    	       		Q89F94              	6.41%
                    	       		Q89JF1              	6.18%
                    	       		Q89CB1              	6.15%
                    	       		Q89KW0              	5.95%
                    	       		Q89SZ4              	5.95%
                    	       		Q89J42              	5.64%
                    	       		H7C6E7              	5.49%
                    	       		Q89CB7              	5.38%
                    	       		Q89HB2              	5.38%
                    	       		Q938Q0              	5.03%
                    	       		Q89RQ1              	5.03%
Bootstrap support for Q75DB2 as seed ortholog is 91%.
Bootstrap support for Q89HL5 as seed ortholog is 69%.
Alternative seed ortholog is Q89GQ7 (14 bits away from this cluster)
Bootstrap support for Q89M15 as seed ortholog is 68%.
Alternative seed ortholog is Q89GQ7 (14 bits away from this cluster)

Group of orthologs #328. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:23 B.japonicum:92

Q750H1              	100.00%		Q89LY4              	100.00%
                    	       		Q89EA6              	7.94%
Bootstrap support for Q750H1 as seed ortholog is 72%.
Alternative seed ortholog is Q75DM1 (23 bits away from this cluster)
Bootstrap support for Q89LY4 as seed ortholog is 100%.

Group of orthologs #329. Best score 92 bits
Score difference with first non-orthologous sequence - A.gossypii:92 B.japonicum:92

Q751I3              	100.00%		Q89XJ0              	100.00%
Bootstrap support for Q751I3 as seed ortholog is 100%.
Bootstrap support for Q89XJ0 as seed ortholog is 100%.

Group of orthologs #330. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 B.japonicum:33

Q75B35              	100.00%		Q89NG1              	100.00%
Q75CU1              	7.23%		
Bootstrap support for Q75B35 as seed ortholog is 100%.
Bootstrap support for Q89NG1 as seed ortholog is 57%.
Alternative seed ortholog is Q89VW4 (33 bits away from this cluster)

Group of orthologs #331. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 B.japonicum:42

Q757B2              	100.00%		Q89C88              	100.00%
Bootstrap support for Q757B2 as seed ortholog is 100%.
Bootstrap support for Q89C88 as seed ortholog is 96%.

Group of orthologs #332. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 B.japonicum:42

Q74Z11              	100.00%		Q89K80              	100.00%
Bootstrap support for Q74Z11 as seed ortholog is 100%.
Bootstrap support for Q89K80 as seed ortholog is 97%.

Group of orthologs #333. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:91 B.japonicum:91

Q74Z48              	100.00%		Q89LJ7              	100.00%
Bootstrap support for Q74Z48 as seed ortholog is 100%.
Bootstrap support for Q89LJ7 as seed ortholog is 100%.

Group of orthologs #334. Best score 91 bits
Score difference with first non-orthologous sequence - A.gossypii:27 B.japonicum:91

Q75DY4              	100.00%		Q89J96              	100.00%
Bootstrap support for Q75DY4 as seed ortholog is 85%.
Bootstrap support for Q89J96 as seed ortholog is 100%.

Group of orthologs #335. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 B.japonicum:90

Q75BG7              	100.00%		Q89KX0              	100.00%
Bootstrap support for Q75BG7 as seed ortholog is 100%.
Bootstrap support for Q89KX0 as seed ortholog is 100%.

Group of orthologs #336. Best score 90 bits
Score difference with first non-orthologous sequence - A.gossypii:90 B.japonicum:90

Q75F64              	100.00%		Q89YE6              	100.00%
Bootstrap support for Q75F64 as seed ortholog is 100%.
Bootstrap support for Q89YE6 as seed ortholog is 100%.

Group of orthologs #337. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q75EP6              	100.00%		Q89LE7              	100.00%
                    	       		Q89IT7              	59.25%
                    	       		Q89DL7              	13.53%
                    	       		Q89UW4              	10.96%
                    	       		Q89XQ8              	8.39%
                    	       		Q89JX0              	7.36%
Bootstrap support for Q75EP6 as seed ortholog is 100%.
Bootstrap support for Q89LE7 as seed ortholog is 100%.

Group of orthologs #338. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q756W6              	100.00%		Q89FE0              	100.00%
Q758H7              	7.32%		
Bootstrap support for Q756W6 as seed ortholog is 100%.
Bootstrap support for Q89FE0 as seed ortholog is 100%.

Group of orthologs #339. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q75CS4              	100.00%		Q89BW7              	100.00%
                    	       		Q89BX6              	12.38%
Bootstrap support for Q75CS4 as seed ortholog is 100%.
Bootstrap support for Q89BW7 as seed ortholog is 100%.

Group of orthologs #340. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q75DG9              	100.00%		Q89WY7              	100.00%
                    	       		Q89WI4              	13.30%
Bootstrap support for Q75DG9 as seed ortholog is 100%.
Bootstrap support for Q89WY7 as seed ortholog is 100%.

Group of orthologs #341. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q751H2              	100.00%		Q89EG9              	100.00%
Bootstrap support for Q751H2 as seed ortholog is 100%.
Bootstrap support for Q89EG9 as seed ortholog is 100%.

Group of orthologs #342. Best score 89 bits
Score difference with first non-orthologous sequence - A.gossypii:89 B.japonicum:89

Q757U0              	100.00%		Q89JA3              	100.00%
Bootstrap support for Q757U0 as seed ortholog is 100%.
Bootstrap support for Q89JA3 as seed ortholog is 100%.

Group of orthologs #343. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:24 B.japonicum:88

Q753X3              	100.00%		Q89IZ9              	100.00%
Bootstrap support for Q753X3 as seed ortholog is 72%.
Alternative seed ortholog is Q75ET3 (24 bits away from this cluster)
Bootstrap support for Q89IZ9 as seed ortholog is 100%.

Group of orthologs #344. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 B.japonicum:88

Q75B76              	100.00%		Q89J91              	100.00%
Bootstrap support for Q75B76 as seed ortholog is 100%.
Bootstrap support for Q89J91 as seed ortholog is 100%.

Group of orthologs #345. Best score 88 bits
Score difference with first non-orthologous sequence - A.gossypii:88 B.japonicum:88

Q75D62              	100.00%		Q89W89              	100.00%
Bootstrap support for Q75D62 as seed ortholog is 100%.
Bootstrap support for Q89W89 as seed ortholog is 100%.

Group of orthologs #346. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 B.japonicum:87

Q754A0              	100.00%		Q89RV9              	100.00%
Q74Z12              	43.25%		Q89T16              	6.19%
Q75BA6              	9.24%		
Bootstrap support for Q754A0 as seed ortholog is 100%.
Bootstrap support for Q89RV9 as seed ortholog is 100%.

Group of orthologs #347. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 B.japonicum:87

Q750A2              	100.00%		Q89FI1              	100.00%
Q756H4              	6.68%		
Bootstrap support for Q750A2 as seed ortholog is 100%.
Bootstrap support for Q89FI1 as seed ortholog is 100%.

Group of orthologs #348. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 B.japonicum:87

Q75ES5              	100.00%		P94325              	100.00%
Q750F3              	34.33%		
Bootstrap support for Q75ES5 as seed ortholog is 100%.
Bootstrap support for P94325 as seed ortholog is 100%.

Group of orthologs #349. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 B.japonicum:87

Q756F8              	100.00%		Q89VV5              	100.00%
                    	       		Q89UV3              	15.71%
Bootstrap support for Q756F8 as seed ortholog is 100%.
Bootstrap support for Q89VV5 as seed ortholog is 100%.

Group of orthologs #350. Best score 87 bits
Score difference with first non-orthologous sequence - A.gossypii:87 B.japonicum:87

Q75EQ1              	100.00%		Q89Y02              	100.00%
                    	       		H7C7X7              	8.54%
Bootstrap support for Q75EQ1 as seed ortholog is 100%.
Bootstrap support for Q89Y02 as seed ortholog is 100%.

Group of orthologs #351. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 B.japonicum:86

Q75CZ4              	100.00%		Q89SV7              	100.00%
Q759Z1              	38.91%		
Bootstrap support for Q75CZ4 as seed ortholog is 100%.
Bootstrap support for Q89SV7 as seed ortholog is 100%.

Group of orthologs #352. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 B.japonicum:86

Q755B4              	100.00%		Q89J73              	100.00%
Bootstrap support for Q755B4 as seed ortholog is 100%.
Bootstrap support for Q89J73 as seed ortholog is 100%.

Group of orthologs #353. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 B.japonicum:86

Q75D24              	100.00%		Q89G83              	100.00%
Bootstrap support for Q75D24 as seed ortholog is 100%.
Bootstrap support for Q89G83 as seed ortholog is 100%.

Group of orthologs #354. Best score 86 bits
Score difference with first non-orthologous sequence - A.gossypii:86 B.japonicum:86

Q75BL5              	100.00%		Q89RW4              	100.00%
Bootstrap support for Q75BL5 as seed ortholog is 100%.
Bootstrap support for Q89RW4 as seed ortholog is 100%.

Group of orthologs #355. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:18 B.japonicum:85

Q754V5              	100.00%		Q89NG5              	100.00%
Q755L9              	7.71%		Q89WU4              	5.50%
Q755L8              	7.01%		
Q755M1              	6.89%		
Q75A29              	5.37%		
Bootstrap support for Q754V5 as seed ortholog is 28%.
Alternative seed ortholog is Q753J0 (18 bits away from this cluster)
Bootstrap support for Q89NG5 as seed ortholog is 100%.

Group of orthologs #356. Best score 85 bits
Score difference with first non-orthologous sequence - A.gossypii:85 B.japonicum:85

Q75BI1              	100.00%		Q89SI8              	100.00%
Q759J8              	17.17%		
Q75DV8              	13.68%		
Bootstrap support for Q75BI1 as seed ortholog is 100%.
Bootstrap support for Q89SI8 as seed ortholog is 100%.

Group of orthologs #357. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 B.japonicum:84

Q753N5              	100.00%		Q89MS1              	100.00%
Bootstrap support for Q753N5 as seed ortholog is 100%.
Bootstrap support for Q89MS1 as seed ortholog is 100%.

Group of orthologs #358. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 B.japonicum:84

Q75B46              	100.00%		Q89IY5              	100.00%
Bootstrap support for Q75B46 as seed ortholog is 100%.
Bootstrap support for Q89IY5 as seed ortholog is 100%.

Group of orthologs #359. Best score 84 bits
Score difference with first non-orthologous sequence - A.gossypii:84 B.japonicum:84

Q75EU2              	100.00%		Q89WB1              	100.00%
Bootstrap support for Q75EU2 as seed ortholog is 100%.
Bootstrap support for Q89WB1 as seed ortholog is 100%.

Group of orthologs #360. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 B.japonicum:35

Q751I2              	100.00%		Q89KD0              	100.00%
Bootstrap support for Q751I2 as seed ortholog is 100%.
Bootstrap support for Q89KD0 as seed ortholog is 86%.

Group of orthologs #361. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 B.japonicum:83

Q75AV7              	100.00%		Q89EG2              	100.00%
Bootstrap support for Q75AV7 as seed ortholog is 100%.
Bootstrap support for Q89EG2 as seed ortholog is 100%.

Group of orthologs #362. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 B.japonicum:83

Q75B31              	100.00%		Q89N57              	100.00%
Bootstrap support for Q75B31 as seed ortholog is 100%.
Bootstrap support for Q89N57 as seed ortholog is 100%.

Group of orthologs #363. Best score 83 bits
Score difference with first non-orthologous sequence - A.gossypii:83 B.japonicum:83

Q75C90              	100.00%		Q89MU0              	100.00%
Bootstrap support for Q75C90 as seed ortholog is 100%.
Bootstrap support for Q89MU0 as seed ortholog is 100%.

Group of orthologs #364. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 B.japonicum:82

Q75CZ9              	100.00%		Q89WJ2              	100.00%
Q757Q4              	12.47%		
Bootstrap support for Q75CZ9 as seed ortholog is 100%.
Bootstrap support for Q89WJ2 as seed ortholog is 100%.

Group of orthologs #365. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:30 B.japonicum:82

Q75CE5              	100.00%		Q89DN1              	100.00%
Bootstrap support for Q75CE5 as seed ortholog is 56%.
Alternative seed ortholog is Q75DZ9 (30 bits away from this cluster)
Bootstrap support for Q89DN1 as seed ortholog is 100%.

Group of orthologs #366. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:82 B.japonicum:39

Q75BA0              	100.00%		Q89KY9              	100.00%
Bootstrap support for Q75BA0 as seed ortholog is 100%.
Bootstrap support for Q89KY9 as seed ortholog is 92%.

Group of orthologs #367. Best score 82 bits
Score difference with first non-orthologous sequence - A.gossypii:11 B.japonicum:82

Q75EQ2              	100.00%		Q89JA1              	100.00%
Bootstrap support for Q75EQ2 as seed ortholog is 68%.
Alternative seed ortholog is Q75EA0 (11 bits away from this cluster)
Bootstrap support for Q89JA1 as seed ortholog is 100%.

Group of orthologs #368. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 B.japonicum:81

Q759G4              	100.00%		Q89XW9              	100.00%
                    	       		Q89Y58              	7.73%
Bootstrap support for Q759G4 as seed ortholog is 100%.
Bootstrap support for Q89XW9 as seed ortholog is 100%.

Group of orthologs #369. Best score 81 bits
Score difference with first non-orthologous sequence - A.gossypii:81 B.japonicum:81

Q75BJ3              	100.00%		Q89WJ8              	100.00%
Bootstrap support for Q75BJ3 as seed ortholog is 100%.
Bootstrap support for Q89WJ8 as seed ortholog is 100%.

Group of orthologs #370. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 B.japonicum:80

Q756U6              	100.00%		Q89L56              	100.00%
Q750W6              	54.93%		Q89L58              	21.55%
Q75EY4              	26.64%		
Bootstrap support for Q756U6 as seed ortholog is 100%.
Bootstrap support for Q89L56 as seed ortholog is 100%.

Group of orthologs #371. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:39 B.japonicum:80

Q75AD5              	100.00%		Q89M69              	100.00%
Bootstrap support for Q75AD5 as seed ortholog is 93%.
Bootstrap support for Q89M69 as seed ortholog is 100%.

Group of orthologs #372. Best score 80 bits
Score difference with first non-orthologous sequence - A.gossypii:80 B.japonicum:80

Q75DV3              	100.00%		Q89M31              	100.00%
Bootstrap support for Q75DV3 as seed ortholog is 100%.
Bootstrap support for Q89M31 as seed ortholog is 100%.

Group of orthologs #373. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 B.japonicum:16

Q754B8              	100.00%		Q89H05              	100.00%
                    	       		Q89II5              	11.74%
                    	       		Q89NL1              	9.48%
                    	       		Q89WG5              	8.80%
                    	       		H7C7Y2              	8.13%
                    	       		Q89EI0              	7.90%
                    	       		Q89Q43              	7.90%
                    	       		H7C6F8              	7.45%
                    	       		P26050              	7.45%
                    	       		Q89PD8              	7.45%
                    	       		Q89FX1              	6.77%
                    	       		Q89E91              	6.55%
                    	       		Q89LP2              	6.55%
                    	       		Q89VP3              	6.55%
                    	       		Q89VC6              	6.32%
                    	       		Q89R47              	6.09%
                    	       		Q89F73              	5.64%
                    	       		Q89N64              	5.64%
                    	       		Q89P52              	5.42%
                    	       		Q89QE2              	5.19%
                    	       		Q89E83              	5.19%
                    	       		Q89Q89              	5.19%
Bootstrap support for Q754B8 as seed ortholog is 100%.
Bootstrap support for Q89H05 as seed ortholog is 71%.
Alternative seed ortholog is Q89V32 (16 bits away from this cluster)

Group of orthologs #374. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 B.japonicum:79

Q75DF8              	100.00%		Q89U96              	100.00%
                    	       		H7C7W4              	68.40%
Bootstrap support for Q75DF8 as seed ortholog is 100%.
Bootstrap support for Q89U96 as seed ortholog is 100%.

Group of orthologs #375. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 B.japonicum:79

Q752T5              	100.00%		Q89BP0              	100.00%
Bootstrap support for Q752T5 as seed ortholog is 100%.
Bootstrap support for Q89BP0 as seed ortholog is 100%.

Group of orthologs #376. Best score 79 bits
Score difference with first non-orthologous sequence - A.gossypii:79 B.japonicum:79

Q756U4              	100.00%		Q89LQ7              	100.00%
Bootstrap support for Q756U4 as seed ortholog is 100%.
Bootstrap support for Q89LQ7 as seed ortholog is 100%.

Group of orthologs #377. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:78 B.japonicum:78

Q757W3              	100.00%		Q89EM7              	100.00%
Bootstrap support for Q757W3 as seed ortholog is 100%.
Bootstrap support for Q89EM7 as seed ortholog is 100%.

Group of orthologs #378. Best score 78 bits
Score difference with first non-orthologous sequence - A.gossypii:26 B.japonicum:78

Q75B33              	100.00%		Q89XT8              	100.00%
Bootstrap support for Q75B33 as seed ortholog is 70%.
Alternative seed ortholog is Q750X5 (26 bits away from this cluster)
Bootstrap support for Q89XT8 as seed ortholog is 100%.

Group of orthologs #379. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 B.japonicum:77

Q758E0              	100.00%		P59370              	100.00%
Bootstrap support for Q758E0 as seed ortholog is 100%.
Bootstrap support for P59370 as seed ortholog is 100%.

Group of orthologs #380. Best score 77 bits
Score difference with first non-orthologous sequence - A.gossypii:77 B.japonicum:77

Q75A35              	100.00%		Q89MR8              	100.00%
Bootstrap support for Q75A35 as seed ortholog is 100%.
Bootstrap support for Q89MR8 as seed ortholog is 100%.

Group of orthologs #381. Best score 76 bits
Score difference with first non-orthologous sequence - A.gossypii:76 B.japonicum:76

Q758J7              	100.00%		P35863              	100.00%
                    	       		P35864              	100.00%
                    	       		Q89IK9              	84.50%
                    	       		P77828              	67.44%
Bootstrap support for Q758J7 as seed ortholog is 100%.
Bootstrap support for P35863 as seed ortholog is 100%.
Bootstrap support for P35864 as seed ortholog is 100%.

Group of orthologs #382. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 B.japonicum:10

Q754S1              	100.00%		Q89J63              	100.00%
                    	       		Q89HI7              	12.84%
                    	       		Q89HK1              	9.15%
                    	       		Q89SL8              	9.15%
Bootstrap support for Q754S1 as seed ortholog is 100%.
Bootstrap support for Q89J63 as seed ortholog is 62%.
Alternative seed ortholog is Q89FY4 (10 bits away from this cluster)

Group of orthologs #383. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 B.japonicum:19

Q75AL8              	100.00%		Q89T36              	100.00%
                    	       		Q89N33              	10.86%
Bootstrap support for Q75AL8 as seed ortholog is 100%.
Bootstrap support for Q89T36 as seed ortholog is 68%.
Alternative seed ortholog is Q89QH8 (19 bits away from this cluster)

Group of orthologs #384. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 B.japonicum:75

Q75EW6              	100.00%		Q89E40              	100.00%
Bootstrap support for Q75EW6 as seed ortholog is 100%.
Bootstrap support for Q89E40 as seed ortholog is 100%.

Group of orthologs #385. Best score 75 bits
Score difference with first non-orthologous sequence - A.gossypii:75 B.japonicum:33

Q74ZQ7              	100.00%		Q89TA3              	100.00%
Bootstrap support for Q74ZQ7 as seed ortholog is 100%.
Bootstrap support for Q89TA3 as seed ortholog is 81%.

Group of orthologs #386. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 B.japonicum:74

Q753A2              	100.00%		Q89BN2              	100.00%
Q75B75              	5.91%		
Bootstrap support for Q753A2 as seed ortholog is 100%.
Bootstrap support for Q89BN2 as seed ortholog is 100%.

Group of orthologs #387. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 B.japonicum:74

Q74ZC7              	100.00%		P28602              	100.00%
Bootstrap support for Q74ZC7 as seed ortholog is 100%.
Bootstrap support for P28602 as seed ortholog is 100%.

Group of orthologs #388. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:10 B.japonicum:74

Q75D76              	100.00%		Q89J80              	100.00%
Bootstrap support for Q75D76 as seed ortholog is 67%.
Alternative seed ortholog is Q75D52 (10 bits away from this cluster)
Bootstrap support for Q89J80 as seed ortholog is 100%.

Group of orthologs #389. Best score 74 bits
Score difference with first non-orthologous sequence - A.gossypii:74 B.japonicum:74

Q759R1              	100.00%		Q89NF8              	100.00%
Bootstrap support for Q759R1 as seed ortholog is 100%.
Bootstrap support for Q89NF8 as seed ortholog is 100%.

Group of orthologs #390. Best score 73 bits
Score difference with first non-orthologous sequence - A.gossypii:73 B.japonicum:73

Q75BZ5              	100.00%		Q89G37              	100.00%
Bootstrap support for Q75BZ5 as seed ortholog is 100%.
Bootstrap support for Q89G37 as seed ortholog is 100%.

Group of orthologs #391. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:72

Q74ZB6              	100.00%		Q89C43              	100.00%
                    	       		Q89RV7              	24.11%
                    	       		Q89R20              	13.37%
                    	       		Q89T20              	13.37%
                    	       		Q89Y12              	12.17%
                    	       		Q89IN0              	11.93%
                    	       		Q89HB3              	10.74%
                    	       		Q89RE2              	10.50%
                    	       		Q89C96              	9.31%
                    	       		Q89R29              	9.07%
                    	       		Q89WX6              	8.11%
                    	       		Q89CJ4              	7.64%
                    	       		Q89PE5              	7.40%
                    	       		Q89R22              	7.16%
                    	       		Q89Y39              	6.44%
                    	       		Q89Y15              	5.97%
                    	       		Q89HE8              	5.73%
                    	       		Q89M24              	5.25%
                    	       		Q89RW9              	5.25%
Bootstrap support for Q74ZB6 as seed ortholog is 100%.
Bootstrap support for Q89C43 as seed ortholog is 100%.

Group of orthologs #392. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:22

Q75AS5              	100.00%		Q89VM7              	100.00%
Q75AS6              	100.00%		Q89RV6              	100.00%
                    	       		Q89G02              	5.62%
                    	       		Q89N94              	5.48%
Bootstrap support for Q75AS5 as seed ortholog is 100%.
Bootstrap support for Q75AS6 as seed ortholog is 100%.
Bootstrap support for Q89VM7 as seed ortholog is 71%.
Alternative seed ortholog is Q89QH8 (22 bits away from this cluster)
Bootstrap support for Q89RV6 as seed ortholog is 66%.
Alternative seed ortholog is Q89QH8 (22 bits away from this cluster)

Group of orthologs #393. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:30

Q75AL4              	100.00%		Q89P05              	100.00%
Q752Y4              	24.05%		
Bootstrap support for Q75AL4 as seed ortholog is 100%.
Bootstrap support for Q89P05 as seed ortholog is 83%.

Group of orthologs #394. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:72

Q75C62              	100.00%		Q89R77              	100.00%
                    	       		Q89KT7              	10.74%
Bootstrap support for Q75C62 as seed ortholog is 100%.
Bootstrap support for Q89R77 as seed ortholog is 100%.

Group of orthologs #395. Best score 72 bits
Score difference with first non-orthologous sequence - A.gossypii:72 B.japonicum:72

Q750Q2              	100.00%		Q89WN9              	100.00%
Bootstrap support for Q750Q2 as seed ortholog is 100%.
Bootstrap support for Q89WN9 as seed ortholog is 100%.

Group of orthologs #396. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:71

Q75E76              	100.00%		Q89KS1              	100.00%
Q753H9              	100.00%		Q89KN5              	100.00%
Q75E88              	88.15%		Q89PT4              	38.51%
                    	       		Q89V63              	32.64%
                    	       		Q89W04              	22.13%
                    	       		Q89XQ7              	21.34%
                    	       		Q89IV5              	21.27%
                    	       		Q89RS5              	19.44%
                    	       		Q89F98              	19.32%
                    	       		Q89J22              	15.77%
                    	       		Q89F80              	14.55%
                    	       		Q89C92              	13.57%
                    	       		Q89R68              	13.33%
                    	       		Q89XR8              	12.84%
                    	       		Q89DR3              	12.44%
                    	       		Q89IU8              	9.02%
                    	       		Q89TN4              	8.68%
                    	       		Q89Y07              	5.87%
                    	       		Q89PE4              	5.75%
                    	       		Q89KV1              	5.12%
Bootstrap support for Q75E76 as seed ortholog is 100%.
Bootstrap support for Q753H9 as seed ortholog is 100%.
Bootstrap support for Q89KS1 as seed ortholog is 100%.
Bootstrap support for Q89KN5 as seed ortholog is 100%.

Group of orthologs #397. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:71

Q759A8              	100.00%		Q89JZ3              	100.00%
                    	       		Q89W32              	20.13%
Bootstrap support for Q759A8 as seed ortholog is 100%.
Bootstrap support for Q89JZ3 as seed ortholog is 100%.

Group of orthologs #398. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:71

Q754B3              	100.00%		Q89JY4              	100.00%
Bootstrap support for Q754B3 as seed ortholog is 100%.
Bootstrap support for Q89JY4 as seed ortholog is 100%.

Group of orthologs #399. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:71

Q75AV0              	100.00%		Q89UJ5              	100.00%
Bootstrap support for Q75AV0 as seed ortholog is 100%.
Bootstrap support for Q89UJ5 as seed ortholog is 100%.

Group of orthologs #400. Best score 71 bits
Score difference with first non-orthologous sequence - A.gossypii:71 B.japonicum:71

Q75D93              	100.00%		Q89WQ2              	100.00%
Bootstrap support for Q75D93 as seed ortholog is 100%.
Bootstrap support for Q89WQ2 as seed ortholog is 100%.

Group of orthologs #401. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:19 B.japonicum:69

Q751D0              	100.00%		Q89J88              	100.00%
Bootstrap support for Q751D0 as seed ortholog is 83%.
Bootstrap support for Q89J88 as seed ortholog is 100%.

Group of orthologs #402. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 B.japonicum:69

Q75AK8              	100.00%		Q89DB4              	100.00%
Bootstrap support for Q75AK8 as seed ortholog is 100%.
Bootstrap support for Q89DB4 as seed ortholog is 100%.

Group of orthologs #403. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 B.japonicum:23

Q75EG1              	100.00%		Q89MR6              	100.00%
Bootstrap support for Q75EG1 as seed ortholog is 100%.
Bootstrap support for Q89MR6 as seed ortholog is 75%.

Group of orthologs #404. Best score 69 bits
Score difference with first non-orthologous sequence - A.gossypii:69 B.japonicum:69

Q75EZ3              	100.00%		Q89X71              	100.00%
Bootstrap support for Q75EZ3 as seed ortholog is 100%.
Bootstrap support for Q89X71 as seed ortholog is 100%.

Group of orthologs #405. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 B.japonicum:15

Q75AF4              	100.00%		Q89JN1              	100.00%
                    	       		Q89JN0              	28.03%
                    	       		Q89MP4              	21.87%
                    	       		Q89WW6              	21.44%
Bootstrap support for Q75AF4 as seed ortholog is 100%.
Bootstrap support for Q89JN1 as seed ortholog is 71%.
Alternative seed ortholog is Q89E85 (15 bits away from this cluster)

Group of orthologs #406. Best score 68 bits
Score difference with first non-orthologous sequence - A.gossypii:68 B.japonicum:68

Q751W1              	100.00%		Q89WU6              	100.00%
Bootstrap support for Q751W1 as seed ortholog is 100%.
Bootstrap support for Q89WU6 as seed ortholog is 100%.

Group of orthologs #407. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:17

Q755F6              	100.00%		Q89DB3              	100.00%
                    	       		Q89QL2              	23.14%
                    	       		Q89HK9              	15.53%
Bootstrap support for Q755F6 as seed ortholog is 100%.
Bootstrap support for Q89DB3 as seed ortholog is 71%.
Alternative seed ortholog is Q89LV1 (17 bits away from this cluster)

Group of orthologs #408. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:5

Q75AK4              	100.00%		Q89J27              	100.00%
                    	       		Q89LS6              	100.00%
Bootstrap support for Q75AK4 as seed ortholog is 100%.
Bootstrap support for Q89J27 as seed ortholog is 59%.
Alternative seed ortholog is Q89KL7 (5 bits away from this cluster)
Bootstrap support for Q89LS6 as seed ortholog is 56%.
Alternative seed ortholog is Q89KL7 (5 bits away from this cluster)

Group of orthologs #409. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:67

Q758B4              	100.00%		Q89JA8              	100.00%
Bootstrap support for Q758B4 as seed ortholog is 100%.
Bootstrap support for Q89JA8 as seed ortholog is 100%.

Group of orthologs #410. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:67

Q752I3              	100.00%		Q89UM3              	100.00%
Bootstrap support for Q752I3 as seed ortholog is 100%.
Bootstrap support for Q89UM3 as seed ortholog is 100%.

Group of orthologs #411. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:67

Q75CA0              	100.00%		Q89SV6              	100.00%
Bootstrap support for Q75CA0 as seed ortholog is 100%.
Bootstrap support for Q89SV6 as seed ortholog is 100%.

Group of orthologs #412. Best score 67 bits
Score difference with first non-orthologous sequence - A.gossypii:67 B.japonicum:67

Q75AS4              	100.00%		Q89UU2              	100.00%
Bootstrap support for Q75AS4 as seed ortholog is 100%.
Bootstrap support for Q89UU2 as seed ortholog is 100%.

Group of orthologs #413. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 B.japonicum:66

D8FGG9              	100.00%		Q89LA9              	100.00%
Q755Q9              	100.00%		Q89C37              	100.00%
Q75BF9              	100.00%		H7C7Y3              	17.08%
Q75F56              	100.00%		H7C6F9              	15.22%
Q752Z6              	77.03%		
Q752E3              	16.01%		
Q755Y5              	12.72%		
Bootstrap support for D8FGG9 as seed ortholog is 100%.
Bootstrap support for Q755Q9 as seed ortholog is 100%.
Bootstrap support for Q75BF9 as seed ortholog is 100%.
Bootstrap support for Q75F56 as seed ortholog is 100%.
Bootstrap support for Q89LA9 as seed ortholog is 100%.
Bootstrap support for Q89C37 as seed ortholog is 100%.

Group of orthologs #414. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 B.japonicum:66

Q751V1              	100.00%		Q89IF7              	100.00%
Q75C02              	9.65%		
Q75BS5              	7.33%		
Q755C4              	6.59%		
Q758E1              	6.11%		
Q75ES0              	5.49%		
Bootstrap support for Q751V1 as seed ortholog is 100%.
Bootstrap support for Q89IF7 as seed ortholog is 100%.

Group of orthologs #415. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 B.japonicum:66

Q756H6              	100.00%		Q89BL4              	100.00%
Bootstrap support for Q756H6 as seed ortholog is 100%.
Bootstrap support for Q89BL4 as seed ortholog is 100%.

Group of orthologs #416. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 B.japonicum:66

Q750W4              	100.00%		Q89L61              	100.00%
Bootstrap support for Q750W4 as seed ortholog is 100%.
Bootstrap support for Q89L61 as seed ortholog is 100%.

Group of orthologs #417. Best score 66 bits
Score difference with first non-orthologous sequence - A.gossypii:66 B.japonicum:66

Q75DD3              	100.00%		Q89VC3              	100.00%
Bootstrap support for Q75DD3 as seed ortholog is 100%.
Bootstrap support for Q89VC3 as seed ortholog is 100%.

Group of orthologs #418. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 B.japonicum:7

Q75F36              	100.00%		Q89KD4              	100.00%
Bootstrap support for Q75F36 as seed ortholog is 100%.
Bootstrap support for Q89KD4 as seed ortholog is 49%.
Alternative seed ortholog is Q89SM0 (7 bits away from this cluster)

Group of orthologs #419. Best score 65 bits
Score difference with first non-orthologous sequence - A.gossypii:65 B.japonicum:65

Q755J2              	100.00%		Q89VJ6              	100.00%
Bootstrap support for Q755J2 as seed ortholog is 100%.
Bootstrap support for Q89VJ6 as seed ortholog is 100%.

Group of orthologs #420. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:19

Q755R7              	100.00%		Q89RD5              	100.00%
                    	       		Q89MI3              	9.68%
                    	       		Q89Q14              	5.60%
                    	       		Q89UT7              	5.09%
Bootstrap support for Q755R7 as seed ortholog is 100%.
Bootstrap support for Q89RD5 as seed ortholog is 64%.
Alternative seed ortholog is Q89VX8 (19 bits away from this cluster)

Group of orthologs #421. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q758I6              	100.00%		Q89UV1              	100.00%
                    	       		Q89WG3              	9.96%
                    	       		Q89EN1              	8.52%
Bootstrap support for Q758I6 as seed ortholog is 100%.
Bootstrap support for Q89UV1 as seed ortholog is 100%.

Group of orthologs #422. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q753U1              	100.00%		Q89BP5              	100.00%
Bootstrap support for Q753U1 as seed ortholog is 100%.
Bootstrap support for Q89BP5 as seed ortholog is 100%.

Group of orthologs #423. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q752X8              	100.00%		Q89DJ9              	100.00%
Bootstrap support for Q752X8 as seed ortholog is 100%.
Bootstrap support for Q89DJ9 as seed ortholog is 100%.

Group of orthologs #424. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q756E9              	100.00%		Q89J85              	100.00%
Bootstrap support for Q756E9 as seed ortholog is 100%.
Bootstrap support for Q89J85 as seed ortholog is 100%.

Group of orthologs #425. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q755M0              	100.00%		Q89KZ1              	100.00%
Bootstrap support for Q755M0 as seed ortholog is 100%.
Bootstrap support for Q89KZ1 as seed ortholog is 100%.

Group of orthologs #426. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q75C42              	100.00%		Q89H42              	100.00%
Bootstrap support for Q75C42 as seed ortholog is 100%.
Bootstrap support for Q89H42 as seed ortholog is 100%.

Group of orthologs #427. Best score 64 bits
Score difference with first non-orthologous sequence - A.gossypii:64 B.japonicum:64

Q752Z9              	100.00%		Q89WK5              	100.00%
Bootstrap support for Q752Z9 as seed ortholog is 100%.
Bootstrap support for Q89WK5 as seed ortholog is 100%.

Group of orthologs #428. Best score 63 bits
Score difference with first non-orthologous sequence - A.gossypii:63 B.japonicum:63

Q751D5              	100.00%		Q89I64              	100.00%
Q75CQ0              	100.00%		
Bootstrap support for Q751D5 as seed ortholog is 100%.
Bootstrap support for Q75CQ0 as seed ortholog is 100%.
Bootstrap support for Q89I64 as seed ortholog is 100%.

Group of orthologs #429. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 B.japonicum:62

Q75AZ6              	100.00%		Q89KP1              	100.00%
                    	       		Q89KN9              	75.94%
                    	       		H7C6Q0              	55.19%
Bootstrap support for Q75AZ6 as seed ortholog is 100%.
Bootstrap support for Q89KP1 as seed ortholog is 100%.

Group of orthologs #430. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 B.japonicum:62

Q75C17              	100.00%		Q89DS0              	100.00%
Bootstrap support for Q75C17 as seed ortholog is 100%.
Bootstrap support for Q89DS0 as seed ortholog is 100%.

Group of orthologs #431. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 B.japonicum:62

Q753E7              	100.00%		Q89LM5              	100.00%
Bootstrap support for Q753E7 as seed ortholog is 100%.
Bootstrap support for Q89LM5 as seed ortholog is 100%.

Group of orthologs #432. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:19 B.japonicum:62

Q759F3              	100.00%		Q89RY2              	100.00%
Bootstrap support for Q759F3 as seed ortholog is 71%.
Alternative seed ortholog is Q752M0 (19 bits away from this cluster)
Bootstrap support for Q89RY2 as seed ortholog is 100%.

Group of orthologs #433. Best score 62 bits
Score difference with first non-orthologous sequence - A.gossypii:62 B.japonicum:62

Q75CP1              	100.00%		Q89WS4              	100.00%
Bootstrap support for Q75CP1 as seed ortholog is 100%.
Bootstrap support for Q89WS4 as seed ortholog is 100%.

Group of orthologs #434. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 B.japonicum:61

Q751M2              	100.00%		Q89MN6              	100.00%
Q757Z2              	22.39%		
Q751M3              	15.78%		
Bootstrap support for Q751M2 as seed ortholog is 100%.
Bootstrap support for Q89MN6 as seed ortholog is 100%.

Group of orthologs #435. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 B.japonicum:61

Q75AA2              	100.00%		Q89NJ6              	100.00%
                    	       		Q89SW8              	16.33%
                    	       		Q89Y25              	13.01%
Bootstrap support for Q75AA2 as seed ortholog is 100%.
Bootstrap support for Q89NJ6 as seed ortholog is 100%.

Group of orthologs #436. Best score 61 bits
Score difference with first non-orthologous sequence - A.gossypii:61 B.japonicum:61

Q756Y6              	100.00%		Q89MC7              	100.00%
Q756M1              	21.09%		
Bootstrap support for Q756Y6 as seed ortholog is 100%.
Bootstrap support for Q89MC7 as seed ortholog is 100%.

Group of orthologs #437. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 B.japonicum:4

Q74Z04              	100.00%		Q89PT8              	100.00%
                    	       		Q89RD2              	100.00%
Bootstrap support for Q74Z04 as seed ortholog is 100%.
Bootstrap support for Q89PT8 as seed ortholog is 49%.
Alternative seed ortholog is Q89GG0 (4 bits away from this cluster)
Bootstrap support for Q89RD2 as seed ortholog is 52%.
Alternative seed ortholog is Q89GG0 (4 bits away from this cluster)

Group of orthologs #438. Best score 60 bits
Score difference with first non-orthologous sequence - A.gossypii:60 B.japonicum:60

Q758F8              	100.00%		Q89LM6              	100.00%
Q75A16              	25.89%		
Bootstrap support for Q758F8 as seed ortholog is 100%.
Bootstrap support for Q89LM6 as seed ortholog is 100%.

Group of orthologs #439. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:59

Q75A40              	100.00%		Q89Y38              	100.00%
                    	       		Q89QI1              	25.47%
                    	       		Q89GE9              	5.81%
Bootstrap support for Q75A40 as seed ortholog is 100%.
Bootstrap support for Q89Y38 as seed ortholog is 100%.

Group of orthologs #440. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:2

Q75CU9              	100.00%		Q89HB1              	100.00%
                    	       		Q89W54              	6.63%
Bootstrap support for Q75CU9 as seed ortholog is 100%.
Bootstrap support for Q89HB1 as seed ortholog is 46%.
Alternative seed ortholog is Q89S78 (2 bits away from this cluster)

Group of orthologs #441. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:6

Q757V0              	100.00%		Q89T60              	100.00%
                    	       		Q89DC1              	5.89%
Bootstrap support for Q757V0 as seed ortholog is 100%.
Bootstrap support for Q89T60 as seed ortholog is 56%.
Alternative seed ortholog is Q89UA0 (6 bits away from this cluster)

Group of orthologs #442. Best score 59 bits
Score difference with first non-orthologous sequence - A.gossypii:59 B.japonicum:59

Q759Q9              	100.00%		Q89WX9              	100.00%
Bootstrap support for Q759Q9 as seed ortholog is 100%.
Bootstrap support for Q89WX9 as seed ortholog is 100%.

Group of orthologs #443. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 B.japonicum:58

Q758G8              	100.00%		Q89DF3              	100.00%
Bootstrap support for Q758G8 as seed ortholog is 100%.
Bootstrap support for Q89DF3 as seed ortholog is 100%.

Group of orthologs #444. Best score 58 bits
Score difference with first non-orthologous sequence - A.gossypii:58 B.japonicum:58

Q75F02              	100.00%		Q89KP6              	100.00%
Bootstrap support for Q75F02 as seed ortholog is 100%.
Bootstrap support for Q89KP6 as seed ortholog is 100%.

Group of orthologs #445. Best score 57 bits
Score difference with first non-orthologous sequence - A.gossypii:57 B.japonicum:57

Q752I6              	100.00%		Q89T03              	100.00%
Bootstrap support for Q752I6 as seed ortholog is 100%.
Bootstrap support for Q89T03 as seed ortholog is 100%.

Group of orthologs #446. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:1 B.japonicum:56

Q755U6              	100.00%		Q89JA6              	100.00%
Bootstrap support for Q755U6 as seed ortholog is 50%.
Alternative seed ortholog is Q756F0 (1 bits away from this cluster)
Bootstrap support for Q89JA6 as seed ortholog is 100%.

Group of orthologs #447. Best score 56 bits
Score difference with first non-orthologous sequence - A.gossypii:56 B.japonicum:56

Q756A4              	100.00%		Q89S84              	100.00%
Bootstrap support for Q756A4 as seed ortholog is 100%.
Bootstrap support for Q89S84 as seed ortholog is 100%.

Group of orthologs #448. Best score 55 bits
Score difference with first non-orthologous sequence - A.gossypii:55 B.japonicum:55

Q755N8              	100.00%		Q89V00              	100.00%
Bootstrap support for Q755N8 as seed ortholog is 100%.
Bootstrap support for Q89V00 as seed ortholog is 100%.

Group of orthologs #449. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 B.japonicum:54

Q750G6              	100.00%		Q89X40              	100.00%
Bootstrap support for Q750G6 as seed ortholog is 100%.
Bootstrap support for Q89X40 as seed ortholog is 100%.

Group of orthologs #450. Best score 54 bits
Score difference with first non-orthologous sequence - A.gossypii:54 B.japonicum:54

Q75C81              	100.00%		Q89WK4              	100.00%
Bootstrap support for Q75C81 as seed ortholog is 100%.
Bootstrap support for Q89WK4 as seed ortholog is 100%.

Group of orthologs #451. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 B.japonicum:53

Q75BP5              	100.00%		Q89I84              	100.00%
Q74ZU7              	35.69%		
Bootstrap support for Q75BP5 as seed ortholog is 100%.
Bootstrap support for Q89I84 as seed ortholog is 100%.

Group of orthologs #452. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 B.japonicum:53

Q755B9              	100.00%		Q89FW5              	100.00%
Bootstrap support for Q755B9 as seed ortholog is 100%.
Bootstrap support for Q89FW5 as seed ortholog is 100%.

Group of orthologs #453. Best score 53 bits
Score difference with first non-orthologous sequence - A.gossypii:53 B.japonicum:53

Q74Z24              	100.00%		Q89T14              	100.00%
Bootstrap support for Q74Z24 as seed ortholog is 100%.
Bootstrap support for Q89T14 as seed ortholog is 100%.

Group of orthologs #454. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:52

Q753W1              	100.00%		Q89XB0              	100.00%
Q75DQ5              	25.61%		Q89EU3              	7.73%
                    	       		Q89R71              	6.64%
                    	       		Q89MN8              	5.98%
Bootstrap support for Q753W1 as seed ortholog is 100%.
Bootstrap support for Q89XB0 as seed ortholog is 100%.

Group of orthologs #455. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:7 B.japonicum:52

Q75AJ8              	100.00%		Q89SG8              	100.00%
Q75F51              	12.03%		Q89F63              	5.41%
Bootstrap support for Q75AJ8 as seed ortholog is 40%.
Alternative seed ortholog is Q751A5 (7 bits away from this cluster)
Bootstrap support for Q89SG8 as seed ortholog is 100%.

Group of orthologs #456. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:52

Q75CA7              	100.00%		Q89I21              	100.00%
                    	       		Q89LG4              	24.46%
Bootstrap support for Q75CA7 as seed ortholog is 100%.
Bootstrap support for Q89I21 as seed ortholog is 100%.

Group of orthologs #457. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:52

Q756Q9              	100.00%		Q89RH2              	100.00%
Q757X8              	19.67%		
Bootstrap support for Q756Q9 as seed ortholog is 100%.
Bootstrap support for Q89RH2 as seed ortholog is 100%.

Group of orthologs #458. Best score 52 bits
Score difference with first non-orthologous sequence - A.gossypii:52 B.japonicum:52

Q75BK2              	100.00%		Q89Y42              	100.00%
                    	       		Q89RX8              	38.40%
Bootstrap support for Q75BK2 as seed ortholog is 100%.
Bootstrap support for Q89Y42 as seed ortholog is 100%.

Group of orthologs #459. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 B.japonicum:51

Q758D6              	100.00%		Q89L50              	100.00%
Bootstrap support for Q758D6 as seed ortholog is 100%.
Bootstrap support for Q89L50 as seed ortholog is 100%.

Group of orthologs #460. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 B.japonicum:51

Q759L8              	100.00%		Q89KE5              	100.00%
Bootstrap support for Q759L8 as seed ortholog is 100%.
Bootstrap support for Q89KE5 as seed ortholog is 100%.

Group of orthologs #461. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 B.japonicum:51

Q75DI4              	100.00%		Q89J83              	100.00%
Bootstrap support for Q75DI4 as seed ortholog is 100%.
Bootstrap support for Q89J83 as seed ortholog is 100%.

Group of orthologs #462. Best score 51 bits
Score difference with first non-orthologous sequence - A.gossypii:51 B.japonicum:51

Q9HF53              	100.00%		Q89J97              	100.00%
Bootstrap support for Q9HF53 as seed ortholog is 100%.
Bootstrap support for Q89J97 as seed ortholog is 100%.

Group of orthologs #463. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:50

Q753W5              	100.00%		H7C7T8              	100.00%
Bootstrap support for Q753W5 as seed ortholog is 100%.
Bootstrap support for H7C7T8 as seed ortholog is 100%.

Group of orthologs #464. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:50

Q74ZK7              	100.00%		Q89J72              	100.00%
Bootstrap support for Q74ZK7 as seed ortholog is 100%.
Bootstrap support for Q89J72 as seed ortholog is 100%.

Group of orthologs #465. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:50

Q754R1              	100.00%		Q89UP0              	100.00%
Bootstrap support for Q754R1 as seed ortholog is 100%.
Bootstrap support for Q89UP0 as seed ortholog is 100%.

Group of orthologs #466. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:50

Q755T1              	100.00%		Q9XBG6              	100.00%
Bootstrap support for Q755T1 as seed ortholog is 100%.
Bootstrap support for Q9XBG6 as seed ortholog is 100%.

Group of orthologs #467. Best score 50 bits
Score difference with first non-orthologous sequence - A.gossypii:50 B.japonicum:50

Q757N0              	100.00%		Q89X75              	100.00%
Bootstrap support for Q757N0 as seed ortholog is 100%.
Bootstrap support for Q89X75 as seed ortholog is 100%.

Group of orthologs #468. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 B.japonicum:48

Q750S3              	100.00%		Q89DV1              	100.00%
                    	       		Q89JB7              	12.10%
                    	       		Q89X48              	6.77%
Bootstrap support for Q750S3 as seed ortholog is 100%.
Bootstrap support for Q89DV1 as seed ortholog is 100%.

Group of orthologs #469. Best score 48 bits
Score difference with first non-orthologous sequence - A.gossypii:48 B.japonicum:48

Q751G2              	100.00%		Q89GU4              	100.00%
                    	       		Q89XL6              	11.50%
Bootstrap support for Q751G2 as seed ortholog is 100%.
Bootstrap support for Q89GU4 as seed ortholog is 100%.

Group of orthologs #470. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 B.japonicum:47

Q750E7              	100.00%		Q89LN3              	100.00%
Q75CD7              	5.68%		
Bootstrap support for Q750E7 as seed ortholog is 100%.
Bootstrap support for Q89LN3 as seed ortholog is 100%.

Group of orthologs #471. Best score 47 bits
Score difference with first non-orthologous sequence - A.gossypii:47 B.japonicum:47

Q758Y1              	100.00%		Q89XX0              	100.00%
Bootstrap support for Q758Y1 as seed ortholog is 100%.
Bootstrap support for Q89XX0 as seed ortholog is 100%.

Group of orthologs #472. Best score 46 bits
Score difference with first non-orthologous sequence - A.gossypii:46 B.japonicum:46

Q759L1              	100.00%		Q89W56              	100.00%
                    	       		Q89F60              	15.44%
                    	       		Q89SB8              	13.97%
                    	       		Q89DJ6              	8.09%
Bootstrap support for Q759L1 as seed ortholog is 100%.
Bootstrap support for Q89W56 as seed ortholog is 100%.

Group of orthologs #473. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 B.japonicum:45

Q75DX1              	100.00%		Q89PN8              	100.00%
                    	       		Q89QC1              	7.37%
                    	       		Q89RF5              	5.94%
Bootstrap support for Q75DX1 as seed ortholog is 100%.
Bootstrap support for Q89PN8 as seed ortholog is 100%.

Group of orthologs #474. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 B.japonicum:45

Q752R3              	100.00%		Q89DN6              	100.00%
Bootstrap support for Q752R3 as seed ortholog is 100%.
Bootstrap support for Q89DN6 as seed ortholog is 100%.

Group of orthologs #475. Best score 45 bits
Score difference with first non-orthologous sequence - A.gossypii:45 B.japonicum:45

Q751W5              	100.00%		Q89XU6              	100.00%
Bootstrap support for Q751W5 as seed ortholog is 100%.
Bootstrap support for Q89XU6 as seed ortholog is 100%.

Group of orthologs #476. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 B.japonicum:44

Q757J8              	100.00%		Q89CZ8              	100.00%
Q756H8              	37.09%		Q89WY0              	13.03%
Bootstrap support for Q757J8 as seed ortholog is 100%.
Bootstrap support for Q89CZ8 as seed ortholog is 100%.

Group of orthologs #477. Best score 44 bits
Score difference with first non-orthologous sequence - A.gossypii:44 B.japonicum:2

Q75EF9              	100.00%		Q89FY3              	100.00%
Bootstrap support for Q75EF9 as seed ortholog is 100%.
Bootstrap support for Q89FY3 as seed ortholog is 52%.
Alternative seed ortholog is Q89PI3 (2 bits away from this cluster)

Group of orthologs #478. Best score 41 bits
Score difference with first non-orthologous sequence - A.gossypii:41 B.japonicum:41

Q758Q0              	100.00%		Q89W29              	100.00%
Q751B8              	18.08%		
Q757S7              	12.81%		
Q74Z27              	9.75%		
Q752N7              	9.58%		
Q75AM1              	8.16%		
Q753V5              	7.37%		
Q75BB2              	6.35%		
Bootstrap support for Q758Q0 as seed ortholog is 100%.
Bootstrap support for Q89W29 as seed ortholog is 100%.