###################################
1973 groups of orthologs
2182 in-paralogs from C.neoformans
3067 in-paralogs from P.ramorum
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 3707 bits
Score difference with first non-orthologous sequence - C.neoformans:3707 P.ramorum:2224

Q5KFR9              	100.00%		H3GM82              	100.00%
Bootstrap support for Q5KFR9 as seed ortholog is 100%.
Bootstrap support for H3GM82 as seed ortholog is 100%.

Group of orthologs #2. Best score 3627 bits
Score difference with first non-orthologous sequence - C.neoformans:3627 P.ramorum:3627

Q5KPW2              	100.00%		H3G8I9              	100.00%
Bootstrap support for Q5KPW2 as seed ortholog is 100%.
Bootstrap support for H3G8I9 as seed ortholog is 100%.

Group of orthologs #3. Best score 1870 bits
Score difference with first non-orthologous sequence - C.neoformans:1870 P.ramorum:1870

Q5KAK5              	100.00%		H3GJC4              	100.00%
Bootstrap support for Q5KAK5 as seed ortholog is 100%.
Bootstrap support for H3GJC4 as seed ortholog is 100%.

Group of orthologs #4. Best score 1794 bits
Score difference with first non-orthologous sequence - C.neoformans:1049 P.ramorum:875

Q5KET5              	100.00%		H3G6V1              	100.00%
Bootstrap support for Q5KET5 as seed ortholog is 100%.
Bootstrap support for H3G6V1 as seed ortholog is 100%.

Group of orthologs #5. Best score 1655 bits
Score difference with first non-orthologous sequence - C.neoformans:1655 P.ramorum:1655

Q5KGG3              	100.00%		H3GA78              	100.00%
Bootstrap support for Q5KGG3 as seed ortholog is 100%.
Bootstrap support for H3GA78 as seed ortholog is 100%.

Group of orthologs #6. Best score 1574 bits
Score difference with first non-orthologous sequence - C.neoformans:1574 P.ramorum:1574

Q5KA29              	100.00%		H3G958              	100.00%
Bootstrap support for Q5KA29 as seed ortholog is 100%.
Bootstrap support for H3G958 as seed ortholog is 100%.

Group of orthologs #7. Best score 1546 bits
Score difference with first non-orthologous sequence - C.neoformans:1546 P.ramorum:1546

Q5KFC9              	100.00%		H3GWA7              	100.00%
Bootstrap support for Q5KFC9 as seed ortholog is 100%.
Bootstrap support for H3GWA7 as seed ortholog is 100%.

Group of orthologs #8. Best score 1539 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.ramorum:1539

Q5KNM2              	100.00%		H3G6H0              	100.00%
Bootstrap support for Q5KNM2 as seed ortholog is 100%.
Bootstrap support for H3G6H0 as seed ortholog is 100%.

Group of orthologs #9. Best score 1469 bits
Score difference with first non-orthologous sequence - C.neoformans:1469 P.ramorum:1469

Q5KEY7              	100.00%		H3G802              	100.00%
Bootstrap support for Q5KEY7 as seed ortholog is 100%.
Bootstrap support for H3G802 as seed ortholog is 100%.

Group of orthologs #10. Best score 1415 bits
Score difference with first non-orthologous sequence - C.neoformans:1415 P.ramorum:1415

P0CN26              	100.00%		H3G7C4              	100.00%
Bootstrap support for P0CN26 as seed ortholog is 100%.
Bootstrap support for H3G7C4 as seed ortholog is 100%.

Group of orthologs #11. Best score 1415 bits
Score difference with first non-orthologous sequence - C.neoformans:1415 P.ramorum:1415

Q5KA63              	100.00%		H3GNE8              	100.00%
Bootstrap support for Q5KA63 as seed ortholog is 100%.
Bootstrap support for H3GNE8 as seed ortholog is 100%.

Group of orthologs #12. Best score 1318 bits
Score difference with first non-orthologous sequence - C.neoformans:1318 P.ramorum:136

Q5KG98              	100.00%		H3GFG1              	100.00%
                    	       		H3GFV5              	56.87%
                    	       		H3H6B1              	40.51%
Bootstrap support for Q5KG98 as seed ortholog is 100%.
Bootstrap support for H3GFG1 as seed ortholog is 95%.

Group of orthologs #13. Best score 1295 bits
Score difference with first non-orthologous sequence - C.neoformans:1295 P.ramorum:1295

Q5KFV9              	100.00%		H3G8F7              	100.00%
Bootstrap support for Q5KFV9 as seed ortholog is 100%.
Bootstrap support for H3G8F7 as seed ortholog is 100%.

Group of orthologs #14. Best score 1277 bits
Score difference with first non-orthologous sequence - C.neoformans:1277 P.ramorum:1277

Q5KBW5              	100.00%		H3G976              	100.00%
Bootstrap support for Q5KBW5 as seed ortholog is 100%.
Bootstrap support for H3G976 as seed ortholog is 100%.

Group of orthologs #15. Best score 1269 bits
Score difference with first non-orthologous sequence - C.neoformans:1269 P.ramorum:1173

Q5KC33              	100.00%		H3G9F7              	100.00%
Bootstrap support for Q5KC33 as seed ortholog is 100%.
Bootstrap support for H3G9F7 as seed ortholog is 100%.

Group of orthologs #16. Best score 1258 bits
Score difference with first non-orthologous sequence - C.neoformans:661 P.ramorum:692

Q5KJ25              	100.00%		H3G987              	100.00%
Bootstrap support for Q5KJ25 as seed ortholog is 100%.
Bootstrap support for H3G987 as seed ortholog is 100%.

Group of orthologs #17. Best score 1249 bits
Score difference with first non-orthologous sequence - C.neoformans:1249 P.ramorum:278

Q5KP97              	100.00%		H3G7M6              	100.00%
Bootstrap support for Q5KP97 as seed ortholog is 100%.
Bootstrap support for H3G7M6 as seed ortholog is 99%.

Group of orthologs #18. Best score 1248 bits
Score difference with first non-orthologous sequence - C.neoformans:1248 P.ramorum:1083

Q5KIB7              	100.00%		H3GA07              	100.00%
Bootstrap support for Q5KIB7 as seed ortholog is 100%.
Bootstrap support for H3GA07 as seed ortholog is 100%.

Group of orthologs #19. Best score 1188 bits
Score difference with first non-orthologous sequence - C.neoformans:1188 P.ramorum:1188

Q5KAR2              	100.00%		H3GA27              	100.00%
Bootstrap support for Q5KAR2 as seed ortholog is 100%.
Bootstrap support for H3GA27 as seed ortholog is 100%.

Group of orthologs #20. Best score 1181 bits
Score difference with first non-orthologous sequence - C.neoformans:1181 P.ramorum:1181

Q5KFT2              	100.00%		H3G968              	100.00%
Bootstrap support for Q5KFT2 as seed ortholog is 100%.
Bootstrap support for H3G968 as seed ortholog is 100%.

Group of orthologs #21. Best score 1142 bits
Score difference with first non-orthologous sequence - C.neoformans:1142 P.ramorum:1142

Q5KIF6              	100.00%		H3H1S7              	100.00%
Bootstrap support for Q5KIF6 as seed ortholog is 100%.
Bootstrap support for H3H1S7 as seed ortholog is 100%.

Group of orthologs #22. Best score 1120 bits
Score difference with first non-orthologous sequence - C.neoformans:1120 P.ramorum:759

Q5KA71              	100.00%		H3G7S3              	100.00%
Bootstrap support for Q5KA71 as seed ortholog is 100%.
Bootstrap support for H3G7S3 as seed ortholog is 100%.

Group of orthologs #23. Best score 1102 bits
Score difference with first non-orthologous sequence - C.neoformans:1102 P.ramorum:1102

Q5KEH7              	100.00%		H3G9M7              	100.00%
Bootstrap support for Q5KEH7 as seed ortholog is 100%.
Bootstrap support for H3G9M7 as seed ortholog is 100%.

Group of orthologs #24. Best score 1077 bits
Score difference with first non-orthologous sequence - C.neoformans:1077 P.ramorum:938

Q5KHJ9              	100.00%		H3G8I7              	100.00%
Bootstrap support for Q5KHJ9 as seed ortholog is 100%.
Bootstrap support for H3G8I7 as seed ortholog is 100%.

Group of orthologs #25. Best score 1066 bits
Score difference with first non-orthologous sequence - C.neoformans:1066 P.ramorum:1066

P0CM22              	100.00%		H3GHV1              	100.00%
Bootstrap support for P0CM22 as seed ortholog is 100%.
Bootstrap support for H3GHV1 as seed ortholog is 100%.

Group of orthologs #26. Best score 1055 bits
Score difference with first non-orthologous sequence - C.neoformans:1055 P.ramorum:1055

Q5KGK1              	100.00%		H3GA16              	100.00%
Bootstrap support for Q5KGK1 as seed ortholog is 100%.
Bootstrap support for H3GA16 as seed ortholog is 100%.

Group of orthologs #27. Best score 1048 bits
Score difference with first non-orthologous sequence - C.neoformans:536 P.ramorum:1048

Q5KGT3              	100.00%		H3G7A2              	100.00%
Bootstrap support for Q5KGT3 as seed ortholog is 100%.
Bootstrap support for H3G7A2 as seed ortholog is 100%.

Group of orthologs #28. Best score 1047 bits
Score difference with first non-orthologous sequence - C.neoformans:1047 P.ramorum:1047

Q5KKH8              	100.00%		H3G5R3              	100.00%
Bootstrap support for Q5KKH8 as seed ortholog is 100%.
Bootstrap support for H3G5R3 as seed ortholog is 100%.

Group of orthologs #29. Best score 1044 bits
Score difference with first non-orthologous sequence - C.neoformans:744 P.ramorum:1044

Q5K9W1              	100.00%		H3GAM4              	100.00%
Bootstrap support for Q5K9W1 as seed ortholog is 100%.
Bootstrap support for H3GAM4 as seed ortholog is 100%.

Group of orthologs #30. Best score 1018 bits
Score difference with first non-orthologous sequence - C.neoformans:1018 P.ramorum:874

Q5KIQ1              	100.00%		H3G917              	100.00%
Bootstrap support for Q5KIQ1 as seed ortholog is 100%.
Bootstrap support for H3G917 as seed ortholog is 100%.

Group of orthologs #31. Best score 1015 bits
Score difference with first non-orthologous sequence - C.neoformans:1015 P.ramorum:1015

Q5KEV8              	100.00%		H3G5P5              	100.00%
Bootstrap support for Q5KEV8 as seed ortholog is 100%.
Bootstrap support for H3G5P5 as seed ortholog is 100%.

Group of orthologs #32. Best score 1005 bits
Score difference with first non-orthologous sequence - C.neoformans:1005 P.ramorum:277

Q5KMF6              	100.00%		H3GAQ3              	100.00%
Bootstrap support for Q5KMF6 as seed ortholog is 100%.
Bootstrap support for H3GAQ3 as seed ortholog is 100%.

Group of orthologs #33. Best score 1001 bits
Score difference with first non-orthologous sequence - C.neoformans:1001 P.ramorum:1001

Q5KE57              	100.00%		H3GA87              	100.00%
Bootstrap support for Q5KE57 as seed ortholog is 100%.
Bootstrap support for H3GA87 as seed ortholog is 100%.

Group of orthologs #34. Best score 1000 bits
Score difference with first non-orthologous sequence - C.neoformans:1000 P.ramorum:1000

P0CS22              	100.00%		H3G869              	100.00%
Bootstrap support for P0CS22 as seed ortholog is 100%.
Bootstrap support for H3G869 as seed ortholog is 100%.

Group of orthologs #35. Best score 997 bits
Score difference with first non-orthologous sequence - C.neoformans:392 P.ramorum:997

Q5KH79              	100.00%		H3GAQ5              	100.00%
Bootstrap support for Q5KH79 as seed ortholog is 100%.
Bootstrap support for H3GAQ5 as seed ortholog is 100%.

Group of orthologs #36. Best score 992 bits
Score difference with first non-orthologous sequence - C.neoformans:992 P.ramorum:346

Q5KPX3              	100.00%		H3G877              	100.00%
Bootstrap support for Q5KPX3 as seed ortholog is 100%.
Bootstrap support for H3G877 as seed ortholog is 100%.

Group of orthologs #37. Best score 988 bits
Score difference with first non-orthologous sequence - C.neoformans:988 P.ramorum:988

Q5K754              	100.00%		H3G9W7              	100.00%
Bootstrap support for Q5K754 as seed ortholog is 100%.
Bootstrap support for H3G9W7 as seed ortholog is 100%.

Group of orthologs #38. Best score 982 bits
Score difference with first non-orthologous sequence - C.neoformans:982 P.ramorum:982

P0CR22              	100.00%		H3G9Y5              	100.00%
Bootstrap support for P0CR22 as seed ortholog is 100%.
Bootstrap support for H3G9Y5 as seed ortholog is 100%.

Group of orthologs #39. Best score 971 bits
Score difference with first non-orthologous sequence - C.neoformans:971 P.ramorum:971

Q5KHW3              	100.00%		H3GEP5              	100.00%
                    	       		H3H7Q1              	100.00%
                    	       		H3G6A8              	30.36%
Bootstrap support for Q5KHW3 as seed ortholog is 100%.
Bootstrap support for H3GEP5 as seed ortholog is 100%.
Bootstrap support for H3H7Q1 as seed ortholog is 100%.

Group of orthologs #40. Best score 964 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.ramorum:964

Q5KIK6              	100.00%		H3G9W6              	100.00%
Bootstrap support for Q5KIK6 as seed ortholog is 98%.
Bootstrap support for H3G9W6 as seed ortholog is 100%.

Group of orthologs #41. Best score 954 bits
Score difference with first non-orthologous sequence - C.neoformans:954 P.ramorum:954

Q5KL19              	100.00%		H3G8G6              	100.00%
Bootstrap support for Q5KL19 as seed ortholog is 100%.
Bootstrap support for H3G8G6 as seed ortholog is 100%.

Group of orthologs #42. Best score 953 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.ramorum:275

Q5KKM4              	100.00%		H3GB49              	100.00%
Q5KKP4              	80.59%		H3GB15              	81.74%
                    	       		H3G9G6              	31.30%
Bootstrap support for Q5KKM4 as seed ortholog is 100%.
Bootstrap support for H3GB49 as seed ortholog is 100%.

Group of orthologs #43. Best score 950 bits
Score difference with first non-orthologous sequence - C.neoformans:621 P.ramorum:541

Q5KCV6              	100.00%		H3G9P7              	100.00%
Bootstrap support for Q5KCV6 as seed ortholog is 100%.
Bootstrap support for H3G9P7 as seed ortholog is 100%.

Group of orthologs #44. Best score 946 bits
Score difference with first non-orthologous sequence - C.neoformans:503 P.ramorum:321

Q5K7R6              	100.00%		H3G966              	100.00%
Bootstrap support for Q5K7R6 as seed ortholog is 100%.
Bootstrap support for H3G966 as seed ortholog is 100%.

Group of orthologs #45. Best score 945 bits
Score difference with first non-orthologous sequence - C.neoformans:372 P.ramorum:398

Q5KKN7              	100.00%		H3G922              	100.00%
Bootstrap support for Q5KKN7 as seed ortholog is 100%.
Bootstrap support for H3G922 as seed ortholog is 100%.

Group of orthologs #46. Best score 930 bits
Score difference with first non-orthologous sequence - C.neoformans:930 P.ramorum:225

Q5KMH0              	100.00%		H3GAB7              	100.00%
Bootstrap support for Q5KMH0 as seed ortholog is 100%.
Bootstrap support for H3GAB7 as seed ortholog is 99%.

Group of orthologs #47. Best score 890 bits
Score difference with first non-orthologous sequence - C.neoformans:890 P.ramorum:690

Q5KBA0              	100.00%		H3GIQ9              	100.00%
Bootstrap support for Q5KBA0 as seed ortholog is 100%.
Bootstrap support for H3GIQ9 as seed ortholog is 100%.

Group of orthologs #48. Best score 877 bits
Score difference with first non-orthologous sequence - C.neoformans:877 P.ramorum:877

Q5KDF5              	100.00%		H3G6H1              	100.00%
Bootstrap support for Q5KDF5 as seed ortholog is 100%.
Bootstrap support for H3G6H1 as seed ortholog is 100%.

Group of orthologs #49. Best score 867 bits
Score difference with first non-orthologous sequence - C.neoformans:867 P.ramorum:459

Q5KF97              	100.00%		H3G795              	100.00%
Bootstrap support for Q5KF97 as seed ortholog is 100%.
Bootstrap support for H3G795 as seed ortholog is 100%.

Group of orthologs #50. Best score 858 bits
Score difference with first non-orthologous sequence - C.neoformans:858 P.ramorum:858

Q5KDD4              	100.00%		H3GD86              	100.00%
Bootstrap support for Q5KDD4 as seed ortholog is 100%.
Bootstrap support for H3GD86 as seed ortholog is 100%.

Group of orthologs #51. Best score 853 bits
Score difference with first non-orthologous sequence - C.neoformans:853 P.ramorum:853

Q5KM99              	100.00%		H3GZH1              	100.00%
Bootstrap support for Q5KM99 as seed ortholog is 100%.
Bootstrap support for H3GZH1 as seed ortholog is 100%.

Group of orthologs #52. Best score 847 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:157

Q5KJN9              	100.00%		H3GKM1              	100.00%
Bootstrap support for Q5KJN9 as seed ortholog is 78%.
Bootstrap support for H3GKM1 as seed ortholog is 99%.

Group of orthologs #53. Best score 844 bits
Score difference with first non-orthologous sequence - C.neoformans:844 P.ramorum:844

Q5KH77              	100.00%		H3GHV9              	100.00%
Bootstrap support for Q5KH77 as seed ortholog is 100%.
Bootstrap support for H3GHV9 as seed ortholog is 100%.

Group of orthologs #54. Best score 831 bits
Score difference with first non-orthologous sequence - C.neoformans:831 P.ramorum:831

Q5KBF6              	100.00%		H3GLZ7              	100.00%
Bootstrap support for Q5KBF6 as seed ortholog is 100%.
Bootstrap support for H3GLZ7 as seed ortholog is 100%.

Group of orthologs #55. Best score 822 bits
Score difference with first non-orthologous sequence - C.neoformans:745 P.ramorum:724

Q5KN88              	100.00%		H3G7J9              	100.00%
Bootstrap support for Q5KN88 as seed ortholog is 100%.
Bootstrap support for H3G7J9 as seed ortholog is 100%.

Group of orthologs #56. Best score 821 bits
Score difference with first non-orthologous sequence - C.neoformans:821 P.ramorum:634

Q5KNR6              	100.00%		H3G8C6              	100.00%
Bootstrap support for Q5KNR6 as seed ortholog is 100%.
Bootstrap support for H3G8C6 as seed ortholog is 100%.

Group of orthologs #57. Best score 820 bits
Score difference with first non-orthologous sequence - C.neoformans:820 P.ramorum:820

Q5KEG6              	100.00%		H3G862              	100.00%
Bootstrap support for Q5KEG6 as seed ortholog is 100%.
Bootstrap support for H3G862 as seed ortholog is 100%.

Group of orthologs #58. Best score 817 bits
Score difference with first non-orthologous sequence - C.neoformans:817 P.ramorum:741

Q5K7U0              	100.00%		H3G7T4              	100.00%
Bootstrap support for Q5K7U0 as seed ortholog is 100%.
Bootstrap support for H3G7T4 as seed ortholog is 100%.

Group of orthologs #59. Best score 816 bits
Score difference with first non-orthologous sequence - C.neoformans:816 P.ramorum:816

Q5KKQ6              	100.00%		H3GTR2              	100.00%
Bootstrap support for Q5KKQ6 as seed ortholog is 100%.
Bootstrap support for H3GTR2 as seed ortholog is 100%.

Group of orthologs #60. Best score 812 bits
Score difference with first non-orthologous sequence - C.neoformans:812 P.ramorum:812

Q5K8J1              	100.00%		H3GWL8              	100.00%
Bootstrap support for Q5K8J1 as seed ortholog is 100%.
Bootstrap support for H3GWL8 as seed ortholog is 100%.

Group of orthologs #61. Best score 809 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.ramorum:37

Q5KCR8              	100.00%		H3GSL8              	100.00%
Bootstrap support for Q5KCR8 as seed ortholog is 100%.
Bootstrap support for H3GSL8 as seed ortholog is 65%.
Alternative seed ortholog is H3GTJ9 (37 bits away from this cluster)

Group of orthologs #62. Best score 804 bits
Score difference with first non-orthologous sequence - C.neoformans:804 P.ramorum:398

P0CN32              	100.00%		H3G9L2              	100.00%
Bootstrap support for P0CN32 as seed ortholog is 100%.
Bootstrap support for H3G9L2 as seed ortholog is 100%.

Group of orthologs #63. Best score 797 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:168

Q5K6Z6              	100.00%		H3G860              	100.00%
Bootstrap support for Q5K6Z6 as seed ortholog is 99%.
Bootstrap support for H3G860 as seed ortholog is 99%.

Group of orthologs #64. Best score 793 bits
Score difference with first non-orthologous sequence - C.neoformans:793 P.ramorum:793

Q5KIS3              	100.00%		H3G5Z2              	100.00%
Bootstrap support for Q5KIS3 as seed ortholog is 100%.
Bootstrap support for H3G5Z2 as seed ortholog is 100%.

Group of orthologs #65. Best score 792 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.ramorum:275

Q5KEX1              	100.00%		H3G933              	100.00%
Bootstrap support for Q5KEX1 as seed ortholog is 100%.
Bootstrap support for H3G933 as seed ortholog is 100%.

Group of orthologs #66. Best score 790 bits
Score difference with first non-orthologous sequence - C.neoformans:790 P.ramorum:790

Q5KLE4              	100.00%		H3G6X8              	100.00%
Bootstrap support for Q5KLE4 as seed ortholog is 100%.
Bootstrap support for H3G6X8 as seed ortholog is 100%.

Group of orthologs #67. Best score 782 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.ramorum:62

Q5KN49              	100.00%		H3G8G1              	100.00%
                    	       		H3G5N7              	5.04%
Bootstrap support for Q5KN49 as seed ortholog is 99%.
Bootstrap support for H3G8G1 as seed ortholog is 81%.

Group of orthologs #68. Best score 779 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:184

Q5KIM6              	100.00%		H3GH83              	100.00%
Bootstrap support for Q5KIM6 as seed ortholog is 84%.
Bootstrap support for H3GH83 as seed ortholog is 99%.

Group of orthologs #69. Best score 771 bits
Score difference with first non-orthologous sequence - C.neoformans:771 P.ramorum:771

P0CR38              	100.00%		H3G930              	100.00%
Bootstrap support for P0CR38 as seed ortholog is 100%.
Bootstrap support for H3G930 as seed ortholog is 100%.

Group of orthologs #70. Best score 768 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:768

Q5KPH0              	100.00%		H3G875              	100.00%
Bootstrap support for Q5KPH0 as seed ortholog is 99%.
Bootstrap support for H3G875 as seed ortholog is 100%.

Group of orthologs #71. Best score 767 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.ramorum:286

Q5K8W5              	100.00%		H3G8C0              	100.00%
Bootstrap support for Q5K8W5 as seed ortholog is 100%.
Bootstrap support for H3G8C0 as seed ortholog is 100%.

Group of orthologs #72. Best score 767 bits
Score difference with first non-orthologous sequence - C.neoformans:767 P.ramorum:767

Q5KDU2              	100.00%		H3GTJ1              	100.00%
Bootstrap support for Q5KDU2 as seed ortholog is 100%.
Bootstrap support for H3GTJ1 as seed ortholog is 100%.

Group of orthologs #73. Best score 761 bits
Score difference with first non-orthologous sequence - C.neoformans:761 P.ramorum:761

Q5KGV5              	100.00%		H3GB02              	100.00%
Bootstrap support for Q5KGV5 as seed ortholog is 100%.
Bootstrap support for H3GB02 as seed ortholog is 100%.

Group of orthologs #74. Best score 752 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:487

Q5KKE7              	100.00%		H3GAD7              	100.00%
Bootstrap support for Q5KKE7 as seed ortholog is 100%.
Bootstrap support for H3GAD7 as seed ortholog is 100%.

Group of orthologs #75. Best score 745 bits
Score difference with first non-orthologous sequence - C.neoformans:745 P.ramorum:745

Q5KAX5              	100.00%		H3G9B0              	100.00%
Bootstrap support for Q5KAX5 as seed ortholog is 100%.
Bootstrap support for H3G9B0 as seed ortholog is 100%.

Group of orthologs #76. Best score 739 bits
Score difference with first non-orthologous sequence - C.neoformans:739 P.ramorum:739

Q5KQ25              	100.00%		H3GKT1              	100.00%
Bootstrap support for Q5KQ25 as seed ortholog is 100%.
Bootstrap support for H3GKT1 as seed ortholog is 100%.

Group of orthologs #77. Best score 731 bits
Score difference with first non-orthologous sequence - C.neoformans:731 P.ramorum:731

Q5KIH7              	100.00%		H3HC97              	100.00%
Bootstrap support for Q5KIH7 as seed ortholog is 100%.
Bootstrap support for H3HC97 as seed ortholog is 100%.

Group of orthologs #78. Best score 730 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.ramorum:11

Q5KP96              	100.00%		H3GNA3              	100.00%
                    	       		H3GXQ6              	16.78%
                    	       		H3GP37              	10.94%
Bootstrap support for Q5KP96 as seed ortholog is 87%.
Bootstrap support for H3GNA3 as seed ortholog is 57%.
Alternative seed ortholog is H3GHA0 (11 bits away from this cluster)

Group of orthologs #79. Best score 721 bits
Score difference with first non-orthologous sequence - C.neoformans:721 P.ramorum:721

Q5KQ47              	100.00%		H3G9K3              	100.00%
Bootstrap support for Q5KQ47 as seed ortholog is 100%.
Bootstrap support for H3G9K3 as seed ortholog is 100%.

Group of orthologs #80. Best score 718 bits
Score difference with first non-orthologous sequence - C.neoformans:718 P.ramorum:472

Q5KDY4              	100.00%		H3GAJ9              	100.00%
Bootstrap support for Q5KDY4 as seed ortholog is 100%.
Bootstrap support for H3GAJ9 as seed ortholog is 100%.

Group of orthologs #81. Best score 713 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:381

Q5K906              	100.00%		H3GA38              	100.00%
Q5KDA3              	99.60%		
Bootstrap support for Q5K906 as seed ortholog is 86%.
Bootstrap support for H3GA38 as seed ortholog is 100%.

Group of orthologs #82. Best score 713 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:713

Q5KJ21              	100.00%		H3G8E5              	100.00%
Bootstrap support for Q5KJ21 as seed ortholog is 99%.
Bootstrap support for H3G8E5 as seed ortholog is 100%.

Group of orthologs #83. Best score 710 bits
Score difference with first non-orthologous sequence - C.neoformans:710 P.ramorum:710

Q5KBW0              	100.00%		H3GAT6              	100.00%
Bootstrap support for Q5KBW0 as seed ortholog is 100%.
Bootstrap support for H3GAT6 as seed ortholog is 100%.

Group of orthologs #84. Best score 709 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.ramorum:188

F5HCX1              	100.00%		H3G5C6              	100.00%
                    	       		H3GHU6              	38.30%
Bootstrap support for F5HCX1 as seed ortholog is 100%.
Bootstrap support for H3G5C6 as seed ortholog is 99%.

Group of orthologs #85. Best score 706 bits
Score difference with first non-orthologous sequence - C.neoformans:706 P.ramorum:706

Q5K9B2              	100.00%		H3G891              	100.00%
Bootstrap support for Q5K9B2 as seed ortholog is 100%.
Bootstrap support for H3G891 as seed ortholog is 100%.

Group of orthologs #86. Best score 706 bits
Score difference with first non-orthologous sequence - C.neoformans:706 P.ramorum:706

Q5KB97              	100.00%		H3G9D6              	100.00%
Bootstrap support for Q5KB97 as seed ortholog is 100%.
Bootstrap support for H3G9D6 as seed ortholog is 100%.

Group of orthologs #87. Best score 702 bits
Score difference with first non-orthologous sequence - C.neoformans:627 P.ramorum:702

Q5K9A5              	100.00%		H3G9R0              	100.00%
Bootstrap support for Q5K9A5 as seed ortholog is 100%.
Bootstrap support for H3G9R0 as seed ortholog is 100%.

Group of orthologs #88. Best score 701 bits
Score difference with first non-orthologous sequence - C.neoformans:459 P.ramorum:701

Q5KCL8              	100.00%		H3G777              	100.00%
                    	       		H3GB83              	71.06%
                    	       		H3H908              	48.15%
Bootstrap support for Q5KCL8 as seed ortholog is 100%.
Bootstrap support for H3G777 as seed ortholog is 100%.

Group of orthologs #89. Best score 695 bits
Score difference with first non-orthologous sequence - C.neoformans:695 P.ramorum:429

Q5KJ92              	100.00%		H3GNJ5              	100.00%
Bootstrap support for Q5KJ92 as seed ortholog is 100%.
Bootstrap support for H3GNJ5 as seed ortholog is 100%.

Group of orthologs #90. Best score 691 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.ramorum:207

Q5KM62              	100.00%		H3G9Y4              	100.00%
                    	       		H3G7E9              	93.81%
                    	       		H3G9X9              	74.78%
                    	       		H3G7E7              	71.24%
                    	       		H3G9Y0              	68.14%
                    	       		H3GAV8              	55.75%
Bootstrap support for Q5KM62 as seed ortholog is 100%.
Bootstrap support for H3G9Y4 as seed ortholog is 100%.

Group of orthologs #91. Best score 691 bits
Score difference with first non-orthologous sequence - C.neoformans:691 P.ramorum:453

Q5KFJ3              	100.00%		H3G6K6              	100.00%
Bootstrap support for Q5KFJ3 as seed ortholog is 100%.
Bootstrap support for H3G6K6 as seed ortholog is 100%.

Group of orthologs #92. Best score 690 bits
Score difference with first non-orthologous sequence - C.neoformans:690 P.ramorum:690

Q5KNM9              	100.00%		H3GAU9              	100.00%
Bootstrap support for Q5KNM9 as seed ortholog is 100%.
Bootstrap support for H3GAU9 as seed ortholog is 100%.

Group of orthologs #93. Best score 690 bits
Score difference with first non-orthologous sequence - C.neoformans:690 P.ramorum:563

Q5KPM2              	100.00%		H3H0Y2              	100.00%
Bootstrap support for Q5KPM2 as seed ortholog is 100%.
Bootstrap support for H3H0Y2 as seed ortholog is 100%.

Group of orthologs #94. Best score 688 bits
Score difference with first non-orthologous sequence - C.neoformans:552 P.ramorum:369

Q5KN48              	100.00%		H3GAK4              	100.00%
                    	       		H3GB63              	99.52%
                    	       		H3GAK3              	84.08%
                    	       		H3H1K9              	78.46%
Bootstrap support for Q5KN48 as seed ortholog is 100%.
Bootstrap support for H3GAK4 as seed ortholog is 100%.

Group of orthologs #95. Best score 688 bits
Score difference with first non-orthologous sequence - C.neoformans:688 P.ramorum:548

Q5K6Z8              	100.00%		H3GV59              	100.00%
Bootstrap support for Q5K6Z8 as seed ortholog is 100%.
Bootstrap support for H3GV59 as seed ortholog is 100%.

Group of orthologs #96. Best score 687 bits
Score difference with first non-orthologous sequence - C.neoformans:687 P.ramorum:687

Q5KFU0              	100.00%		H3G9K5              	100.00%
Bootstrap support for Q5KFU0 as seed ortholog is 100%.
Bootstrap support for H3G9K5 as seed ortholog is 100%.

Group of orthologs #97. Best score 684 bits
Score difference with first non-orthologous sequence - C.neoformans:684 P.ramorum:684

Q5KPJ5              	100.00%		H3G9J1              	100.00%
Bootstrap support for Q5KPJ5 as seed ortholog is 100%.
Bootstrap support for H3G9J1 as seed ortholog is 100%.

Group of orthologs #98. Best score 683 bits
Score difference with first non-orthologous sequence - C.neoformans:683 P.ramorum:65

Q5KMU3              	100.00%		H3GR76              	100.00%
Bootstrap support for Q5KMU3 as seed ortholog is 100%.
Bootstrap support for H3GR76 as seed ortholog is 87%.

Group of orthologs #99. Best score 683 bits
Score difference with first non-orthologous sequence - C.neoformans:683 P.ramorum:683

Q5KJT2              	100.00%		H3GUY1              	100.00%
Bootstrap support for Q5KJT2 as seed ortholog is 100%.
Bootstrap support for H3GUY1 as seed ortholog is 100%.

Group of orthologs #100. Best score 680 bits
Score difference with first non-orthologous sequence - C.neoformans:333 P.ramorum:285

Q5KKP2              	100.00%		H3G5V7              	100.00%
Bootstrap support for Q5KKP2 as seed ortholog is 100%.
Bootstrap support for H3G5V7 as seed ortholog is 99%.

Group of orthologs #101. Best score 677 bits
Score difference with first non-orthologous sequence - C.neoformans:677 P.ramorum:380

P0CN30              	100.00%		H3G8M4              	100.00%
                    	       		H3G8L8              	99.07%
Bootstrap support for P0CN30 as seed ortholog is 100%.
Bootstrap support for H3G8M4 as seed ortholog is 100%.

Group of orthologs #102. Best score 676 bits
Score difference with first non-orthologous sequence - C.neoformans:676 P.ramorum:389

Q5KLP9              	100.00%		H3G6I6              	100.00%
Bootstrap support for Q5KLP9 as seed ortholog is 100%.
Bootstrap support for H3G6I6 as seed ortholog is 100%.

Group of orthologs #103. Best score 675 bits
Score difference with first non-orthologous sequence - C.neoformans:675 P.ramorum:675

Q5KP40              	100.00%		H3G897              	100.00%
Bootstrap support for Q5KP40 as seed ortholog is 100%.
Bootstrap support for H3G897 as seed ortholog is 100%.

Group of orthologs #104. Best score 674 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.ramorum:273

Q5K8Q3              	100.00%		H3GAX1              	100.00%
Bootstrap support for Q5K8Q3 as seed ortholog is 100%.
Bootstrap support for H3GAX1 as seed ortholog is 99%.

Group of orthologs #105. Best score 673 bits
Score difference with first non-orthologous sequence - C.neoformans:560 P.ramorum:176

Q5K8Q4              	100.00%		H3G6R8              	100.00%
Bootstrap support for Q5K8Q4 as seed ortholog is 100%.
Bootstrap support for H3G6R8 as seed ortholog is 56%.
Alternative seed ortholog is H3GQ49 (176 bits away from this cluster)

Group of orthologs #106. Best score 663 bits
Score difference with first non-orthologous sequence - C.neoformans:663 P.ramorum:663

Q5KH73              	100.00%		H3GAM6              	100.00%
Bootstrap support for Q5KH73 as seed ortholog is 100%.
Bootstrap support for H3GAM6 as seed ortholog is 100%.

Group of orthologs #107. Best score 662 bits
Score difference with first non-orthologous sequence - C.neoformans:662 P.ramorum:662

Q5K9H1              	100.00%		H3GB16              	100.00%
Bootstrap support for Q5K9H1 as seed ortholog is 100%.
Bootstrap support for H3GB16 as seed ortholog is 100%.

Group of orthologs #108. Best score 661 bits
Score difference with first non-orthologous sequence - C.neoformans:466 P.ramorum:398

Q5KP06              	100.00%		H3G9B9              	100.00%
                    	       		H3G9B8              	34.65%
Bootstrap support for Q5KP06 as seed ortholog is 100%.
Bootstrap support for H3G9B9 as seed ortholog is 100%.

Group of orthologs #109. Best score 658 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.ramorum:658

Q5K9G4              	100.00%		H3G6X2              	100.00%
Bootstrap support for Q5K9G4 as seed ortholog is 100%.
Bootstrap support for H3G6X2 as seed ortholog is 100%.

Group of orthologs #110. Best score 654 bits
Score difference with first non-orthologous sequence - C.neoformans:654 P.ramorum:189

P0CQ16              	100.00%		H3G7B9              	100.00%
Bootstrap support for P0CQ16 as seed ortholog is 100%.
Bootstrap support for H3G7B9 as seed ortholog is 99%.

Group of orthologs #111. Best score 654 bits
Score difference with first non-orthologous sequence - C.neoformans:654 P.ramorum:654

Q5KPI3              	100.00%		H3G7T2              	100.00%
Bootstrap support for Q5KPI3 as seed ortholog is 100%.
Bootstrap support for H3G7T2 as seed ortholog is 100%.

Group of orthologs #112. Best score 653 bits
Score difference with first non-orthologous sequence - C.neoformans:653 P.ramorum:653

Q5KL42              	100.00%		H3G982              	100.00%
Bootstrap support for Q5KL42 as seed ortholog is 100%.
Bootstrap support for H3G982 as seed ortholog is 100%.

Group of orthologs #113. Best score 651 bits
Score difference with first non-orthologous sequence - C.neoformans:651 P.ramorum:651

Q5KBI1              	100.00%		H3G985              	100.00%
Bootstrap support for Q5KBI1 as seed ortholog is 100%.
Bootstrap support for H3G985 as seed ortholog is 100%.

Group of orthologs #114. Best score 650 bits
Score difference with first non-orthologous sequence - C.neoformans:650 P.ramorum:220

P0CP00              	100.00%		H3GHD9              	100.00%
Bootstrap support for P0CP00 as seed ortholog is 100%.
Bootstrap support for H3GHD9 as seed ortholog is 99%.

Group of orthologs #115. Best score 648 bits
Score difference with first non-orthologous sequence - C.neoformans:648 P.ramorum:479

Q5KGN2              	100.00%		H3G8K6              	100.00%
Bootstrap support for Q5KGN2 as seed ortholog is 100%.
Bootstrap support for H3G8K6 as seed ortholog is 100%.

Group of orthologs #116. Best score 646 bits
Score difference with first non-orthologous sequence - C.neoformans:646 P.ramorum:646

Q5KBP7              	100.00%		H3GBZ6              	100.00%
Bootstrap support for Q5KBP7 as seed ortholog is 100%.
Bootstrap support for H3GBZ6 as seed ortholog is 100%.

Group of orthologs #117. Best score 645 bits
Score difference with first non-orthologous sequence - C.neoformans:645 P.ramorum:553

P0CO10              	100.00%		H3G9F8              	100.00%
Bootstrap support for P0CO10 as seed ortholog is 100%.
Bootstrap support for H3G9F8 as seed ortholog is 100%.

Group of orthologs #118. Best score 641 bits
Score difference with first non-orthologous sequence - C.neoformans:641 P.ramorum:641

Q5KLI4              	100.00%		H3GLF9              	100.00%
Bootstrap support for Q5KLI4 as seed ortholog is 100%.
Bootstrap support for H3GLF9 as seed ortholog is 100%.

Group of orthologs #119. Best score 640 bits
Score difference with first non-orthologous sequence - C.neoformans:640 P.ramorum:640

Q5KEV3              	100.00%		H3GEL6              	100.00%
Bootstrap support for Q5KEV3 as seed ortholog is 100%.
Bootstrap support for H3GEL6 as seed ortholog is 100%.

Group of orthologs #120. Best score 640 bits
Score difference with first non-orthologous sequence - C.neoformans:640 P.ramorum:640

Q5KLW7              	100.00%		H3G9C4              	100.00%
Bootstrap support for Q5KLW7 as seed ortholog is 100%.
Bootstrap support for H3G9C4 as seed ortholog is 100%.

Group of orthologs #121. Best score 639 bits
Score difference with first non-orthologous sequence - C.neoformans:639 P.ramorum:350

Q5K7N5              	100.00%		H3GGH5              	100.00%
Bootstrap support for Q5K7N5 as seed ortholog is 100%.
Bootstrap support for H3GGH5 as seed ortholog is 100%.

Group of orthologs #122. Best score 636 bits
Score difference with first non-orthologous sequence - C.neoformans:636 P.ramorum:636

Q5KI64              	100.00%		H3GAA1              	100.00%
Bootstrap support for Q5KI64 as seed ortholog is 100%.
Bootstrap support for H3GAA1 as seed ortholog is 100%.

Group of orthologs #123. Best score 635 bits
Score difference with first non-orthologous sequence - C.neoformans:459 P.ramorum:456

P0CQ72              	100.00%		H3GA17              	100.00%
Bootstrap support for P0CQ72 as seed ortholog is 100%.
Bootstrap support for H3GA17 as seed ortholog is 100%.

Group of orthologs #124. Best score 632 bits
Score difference with first non-orthologous sequence - C.neoformans:632 P.ramorum:632

Q5K7P1              	100.00%		H3G5U5              	100.00%
Bootstrap support for Q5K7P1 as seed ortholog is 100%.
Bootstrap support for H3G5U5 as seed ortholog is 100%.

Group of orthologs #125. Best score 627 bits
Score difference with first non-orthologous sequence - C.neoformans:627 P.ramorum:627

Q5KP26              	100.00%		H3G8B1              	100.00%
Bootstrap support for Q5KP26 as seed ortholog is 100%.
Bootstrap support for H3G8B1 as seed ortholog is 100%.

Group of orthologs #126. Best score 624 bits
Score difference with first non-orthologous sequence - C.neoformans:624 P.ramorum:624

Q5KC69              	100.00%		H3G9A5              	100.00%
Bootstrap support for Q5KC69 as seed ortholog is 100%.
Bootstrap support for H3G9A5 as seed ortholog is 100%.

Group of orthologs #127. Best score 624 bits
Score difference with first non-orthologous sequence - C.neoformans:624 P.ramorum:356

Q5KQ07              	100.00%		H3GAS2              	100.00%
Bootstrap support for Q5KQ07 as seed ortholog is 100%.
Bootstrap support for H3GAS2 as seed ortholog is 100%.

Group of orthologs #128. Best score 623 bits
Score difference with first non-orthologous sequence - C.neoformans:623 P.ramorum:623

Q5K6X3              	100.00%		H3G9G8              	100.00%
Bootstrap support for Q5K6X3 as seed ortholog is 100%.
Bootstrap support for H3G9G8 as seed ortholog is 100%.

Group of orthologs #129. Best score 623 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:623

Q5KNS5              	100.00%		H3GAE1              	100.00%
Bootstrap support for Q5KNS5 as seed ortholog is 86%.
Bootstrap support for H3GAE1 as seed ortholog is 100%.

Group of orthologs #130. Best score 622 bits
Score difference with first non-orthologous sequence - C.neoformans:622 P.ramorum:622

P0CL88              	100.00%		H3GSI3              	100.00%
Bootstrap support for P0CL88 as seed ortholog is 100%.
Bootstrap support for H3GSI3 as seed ortholog is 100%.

Group of orthologs #131. Best score 620 bits
Score difference with first non-orthologous sequence - C.neoformans:620 P.ramorum:620

P0CM96              	100.00%		H3G6X3              	100.00%
                    	       		H3GAH5              	97.02%
Bootstrap support for P0CM96 as seed ortholog is 100%.
Bootstrap support for H3G6X3 as seed ortholog is 100%.

Group of orthologs #132. Best score 619 bits
Score difference with first non-orthologous sequence - C.neoformans:619 P.ramorum:619

Q5KLA1              	100.00%		H3G978              	100.00%
Bootstrap support for Q5KLA1 as seed ortholog is 100%.
Bootstrap support for H3G978 as seed ortholog is 100%.

Group of orthologs #133. Best score 619 bits
Score difference with first non-orthologous sequence - C.neoformans:619 P.ramorum:293

Q5KNC4              	100.00%		H3GCX9              	100.00%
Bootstrap support for Q5KNC4 as seed ortholog is 100%.
Bootstrap support for H3GCX9 as seed ortholog is 100%.

Group of orthologs #134. Best score 616 bits
Score difference with first non-orthologous sequence - C.neoformans:444 P.ramorum:616

Q5KIL9              	100.00%		H3GRC1              	100.00%
Bootstrap support for Q5KIL9 as seed ortholog is 100%.
Bootstrap support for H3GRC1 as seed ortholog is 100%.

Group of orthologs #135. Best score 614 bits
Score difference with first non-orthologous sequence - C.neoformans:614 P.ramorum:614

P0CQ22              	100.00%		H3GEH1              	100.00%
Bootstrap support for P0CQ22 as seed ortholog is 100%.
Bootstrap support for H3GEH1 as seed ortholog is 100%.

Group of orthologs #136. Best score 613 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.ramorum:276

P0CQ76              	100.00%		H3G9I9              	100.00%
Bootstrap support for P0CQ76 as seed ortholog is 100%.
Bootstrap support for H3G9I9 as seed ortholog is 100%.

Group of orthologs #137. Best score 613 bits
Score difference with first non-orthologous sequence - C.neoformans:613 P.ramorum:613

Q5KQ62              	100.00%		H3G6U9              	100.00%
Bootstrap support for Q5KQ62 as seed ortholog is 100%.
Bootstrap support for H3G6U9 as seed ortholog is 100%.

Group of orthologs #138. Best score 611 bits
Score difference with first non-orthologous sequence - C.neoformans:611 P.ramorum:528

Q5K8L8              	100.00%		H3H2A5              	100.00%
Bootstrap support for Q5K8L8 as seed ortholog is 100%.
Bootstrap support for H3H2A5 as seed ortholog is 100%.

Group of orthologs #139. Best score 609 bits
Score difference with first non-orthologous sequence - C.neoformans:339 P.ramorum:309

Q5KIC0              	100.00%		H3GRQ9              	100.00%
                    	       		H3GQ90              	59.37%
                    	       		H3G822              	12.38%
Bootstrap support for Q5KIC0 as seed ortholog is 99%.
Bootstrap support for H3GRQ9 as seed ortholog is 99%.

Group of orthologs #140. Best score 609 bits
Score difference with first non-orthologous sequence - C.neoformans:609 P.ramorum:609

Q5KKV6              	100.00%		H3G9K7              	100.00%
Bootstrap support for Q5KKV6 as seed ortholog is 100%.
Bootstrap support for H3G9K7 as seed ortholog is 100%.

Group of orthologs #141. Best score 608 bits
Score difference with first non-orthologous sequence - C.neoformans:608 P.ramorum:395

Q5KPQ9              	100.00%		H3G6T5              	100.00%
Bootstrap support for Q5KPQ9 as seed ortholog is 100%.
Bootstrap support for H3G6T5 as seed ortholog is 100%.

Group of orthologs #142. Best score 607 bits
Score difference with first non-orthologous sequence - C.neoformans:607 P.ramorum:607

P0CR26              	100.00%		H3G8X0              	100.00%
Bootstrap support for P0CR26 as seed ortholog is 100%.
Bootstrap support for H3G8X0 as seed ortholog is 100%.

Group of orthologs #143. Best score 606 bits
Score difference with first non-orthologous sequence - C.neoformans:420 P.ramorum:214

P0CQ84              	100.00%		H3G649              	100.00%
Bootstrap support for P0CQ84 as seed ortholog is 100%.
Bootstrap support for H3G649 as seed ortholog is 100%.

Group of orthologs #144. Best score 603 bits
Score difference with first non-orthologous sequence - C.neoformans:603 P.ramorum:603

Q5KE94              	100.00%		H3GA85              	100.00%
Bootstrap support for Q5KE94 as seed ortholog is 100%.
Bootstrap support for H3GA85 as seed ortholog is 100%.

Group of orthologs #145. Best score 602 bits
Score difference with first non-orthologous sequence - C.neoformans:602 P.ramorum:390

Q5KJ33              	100.00%		H3GUH6              	100.00%
Bootstrap support for Q5KJ33 as seed ortholog is 100%.
Bootstrap support for H3GUH6 as seed ortholog is 100%.

Group of orthologs #146. Best score 601 bits
Score difference with first non-orthologous sequence - C.neoformans:601 P.ramorum:351

Q5KLI3              	100.00%		H3GCT4              	100.00%
Bootstrap support for Q5KLI3 as seed ortholog is 100%.
Bootstrap support for H3GCT4 as seed ortholog is 100%.

Group of orthologs #147. Best score 601 bits
Score difference with first non-orthologous sequence - C.neoformans:601 P.ramorum:601

Q5KLD7              	100.00%		H3GKZ2              	100.00%
Bootstrap support for Q5KLD7 as seed ortholog is 100%.
Bootstrap support for H3GKZ2 as seed ortholog is 100%.

Group of orthologs #148. Best score 599 bits
Score difference with first non-orthologous sequence - C.neoformans:599 P.ramorum:599

Q5KI75              	100.00%		H3G9Z1              	100.00%
Bootstrap support for Q5KI75 as seed ortholog is 100%.
Bootstrap support for H3G9Z1 as seed ortholog is 100%.

Group of orthologs #149. Best score 599 bits
Score difference with first non-orthologous sequence - C.neoformans:444 P.ramorum:337

Q5KE58              	100.00%		H3GH04              	100.00%
Bootstrap support for Q5KE58 as seed ortholog is 100%.
Bootstrap support for H3GH04 as seed ortholog is 100%.

Group of orthologs #150. Best score 598 bits
Score difference with first non-orthologous sequence - C.neoformans:598 P.ramorum:598

Q5KIH6              	100.00%		H3G970              	100.00%
Bootstrap support for Q5KIH6 as seed ortholog is 100%.
Bootstrap support for H3G970 as seed ortholog is 100%.

Group of orthologs #151. Best score 596 bits
Score difference with first non-orthologous sequence - C.neoformans:596 P.ramorum:596

Q5KJI4              	100.00%		H3G8E9              	100.00%
Bootstrap support for Q5KJI4 as seed ortholog is 100%.
Bootstrap support for H3G8E9 as seed ortholog is 100%.

Group of orthologs #152. Best score 595 bits
Score difference with first non-orthologous sequence - C.neoformans:426 P.ramorum:435

P0CQ96              	100.00%		H3G9Z6              	100.00%
Bootstrap support for P0CQ96 as seed ortholog is 100%.
Bootstrap support for H3G9Z6 as seed ortholog is 100%.

Group of orthologs #153. Best score 592 bits
Score difference with first non-orthologous sequence - C.neoformans:592 P.ramorum:437

Q5KLV5              	100.00%		H3HD78              	100.00%
Bootstrap support for Q5KLV5 as seed ortholog is 100%.
Bootstrap support for H3HD78 as seed ortholog is 100%.

Group of orthologs #154. Best score 591 bits
Score difference with first non-orthologous sequence - C.neoformans:591 P.ramorum:347

Q5KLG5              	100.00%		H3G7X1              	100.00%
Bootstrap support for Q5KLG5 as seed ortholog is 100%.
Bootstrap support for H3G7X1 as seed ortholog is 100%.

Group of orthologs #155. Best score 590 bits
Score difference with first non-orthologous sequence - C.neoformans:590 P.ramorum:590

P0CR28              	100.00%		H3G952              	100.00%
Bootstrap support for P0CR28 as seed ortholog is 100%.
Bootstrap support for H3G952 as seed ortholog is 100%.

Group of orthologs #156. Best score 586 bits
Score difference with first non-orthologous sequence - C.neoformans:586 P.ramorum:411

Q5KDL3              	100.00%		H3GLH3              	100.00%
Bootstrap support for Q5KDL3 as seed ortholog is 100%.
Bootstrap support for H3GLH3 as seed ortholog is 100%.

Group of orthologs #157. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 P.ramorum:320

Q5K9S3              	100.00%		H3G5J3              	100.00%
Bootstrap support for Q5K9S3 as seed ortholog is 100%.
Bootstrap support for H3G5J3 as seed ortholog is 100%.

Group of orthologs #158. Best score 585 bits
Score difference with first non-orthologous sequence - C.neoformans:585 P.ramorum:359

Q5KKU4              	100.00%		H3G9Y1              	100.00%
Bootstrap support for Q5KKU4 as seed ortholog is 100%.
Bootstrap support for H3G9Y1 as seed ortholog is 100%.

Group of orthologs #159. Best score 584 bits
Score difference with first non-orthologous sequence - C.neoformans:584 P.ramorum:145

Q5KKT5              	100.00%		H3G5D6              	100.00%
Bootstrap support for Q5KKT5 as seed ortholog is 100%.
Bootstrap support for H3G5D6 as seed ortholog is 99%.

Group of orthologs #160. Best score 583 bits
Score difference with first non-orthologous sequence - C.neoformans:415 P.ramorum:403

P0CQ80              	100.00%		H3G996              	100.00%
Bootstrap support for P0CQ80 as seed ortholog is 100%.
Bootstrap support for H3G996 as seed ortholog is 100%.

Group of orthologs #161. Best score 582 bits
Score difference with first non-orthologous sequence - C.neoformans:392 P.ramorum:389

P0CQ70              	100.00%		H3G926              	100.00%
Bootstrap support for P0CQ70 as seed ortholog is 100%.
Bootstrap support for H3G926 as seed ortholog is 100%.

Group of orthologs #162. Best score 577 bits
Score difference with first non-orthologous sequence - C.neoformans:577 P.ramorum:577

Q5K9E9              	100.00%		H3GA45              	100.00%
Bootstrap support for Q5K9E9 as seed ortholog is 100%.
Bootstrap support for H3GA45 as seed ortholog is 100%.

Group of orthologs #163. Best score 577 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.ramorum:152

Q5KME1              	100.00%		H3GAS5              	100.00%
Bootstrap support for Q5KME1 as seed ortholog is 100%.
Bootstrap support for H3GAS5 as seed ortholog is 100%.

Group of orthologs #164. Best score 576 bits
Score difference with first non-orthologous sequence - C.neoformans:576 P.ramorum:380

Q5KHN7              	100.00%		H3GAL9              	100.00%
Bootstrap support for Q5KHN7 as seed ortholog is 100%.
Bootstrap support for H3GAL9 as seed ortholog is 100%.

Group of orthologs #165. Best score 576 bits
Score difference with first non-orthologous sequence - C.neoformans:576 P.ramorum:400

Q5KA27              	100.00%		H3HAM1              	100.00%
Bootstrap support for Q5KA27 as seed ortholog is 100%.
Bootstrap support for H3HAM1 as seed ortholog is 100%.

Group of orthologs #166. Best score 572 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.ramorum:572

P0CQ98              	100.00%		H3G7N9              	100.00%
Bootstrap support for P0CQ98 as seed ortholog is 100%.
Bootstrap support for H3G7N9 as seed ortholog is 100%.

Group of orthologs #167. Best score 570 bits
Score difference with first non-orthologous sequence - C.neoformans:570 P.ramorum:4

Q5KLT9              	100.00%		H3G9I7              	100.00%
Bootstrap support for Q5KLT9 as seed ortholog is 100%.
Bootstrap support for H3G9I7 as seed ortholog is 57%.
Alternative seed ortholog is H3GA90 (4 bits away from this cluster)

Group of orthologs #168. Best score 569 bits
Score difference with first non-orthologous sequence - C.neoformans:569 P.ramorum:569

Q5K9D7              	100.00%		H3GA72              	100.00%
Bootstrap support for Q5K9D7 as seed ortholog is 100%.
Bootstrap support for H3GA72 as seed ortholog is 100%.

Group of orthologs #169. Best score 567 bits
Score difference with first non-orthologous sequence - C.neoformans:462 P.ramorum:89

Q5KBB1              	100.00%		H3G8G8              	100.00%
Bootstrap support for Q5KBB1 as seed ortholog is 100%.
Bootstrap support for H3G8G8 as seed ortholog is 94%.

Group of orthologs #170. Best score 565 bits
Score difference with first non-orthologous sequence - C.neoformans:565 P.ramorum:135

Q5K8H1              	100.00%		H3GU12              	100.00%
                    	       		H3H4C0              	14.23%
Bootstrap support for Q5K8H1 as seed ortholog is 100%.
Bootstrap support for H3GU12 as seed ortholog is 98%.

Group of orthologs #171. Best score 563 bits
Score difference with first non-orthologous sequence - C.neoformans:563 P.ramorum:300

Q5KHR6              	100.00%		H3G6I7              	100.00%
Bootstrap support for Q5KHR6 as seed ortholog is 100%.
Bootstrap support for H3G6I7 as seed ortholog is 100%.

Group of orthologs #172. Best score 562 bits
Score difference with first non-orthologous sequence - C.neoformans:562 P.ramorum:562

P0CS34              	100.00%		H3G5N2              	100.00%
Bootstrap support for P0CS34 as seed ortholog is 100%.
Bootstrap support for H3G5N2 as seed ortholog is 100%.

Group of orthologs #173. Best score 561 bits
Score difference with first non-orthologous sequence - C.neoformans:561 P.ramorum:163

P0CL92              	100.00%		H3GAS7              	100.00%
Bootstrap support for P0CL92 as seed ortholog is 100%.
Bootstrap support for H3GAS7 as seed ortholog is 99%.

Group of orthologs #174. Best score 561 bits
Score difference with first non-orthologous sequence - C.neoformans:561 P.ramorum:327

Q5KDW0              	100.00%		H3G9G0              	100.00%
Bootstrap support for Q5KDW0 as seed ortholog is 100%.
Bootstrap support for H3G9G0 as seed ortholog is 100%.

Group of orthologs #175. Best score 559 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.ramorum:233

Q5KNB3              	100.00%		H3GLZ4              	100.00%
Q5K896              	100.00%		H3H6S7              	100.00%
Q5KJA1              	15.21%		H3H5U7              	78.00%
Q5KLC4              	14.48%		H3GQ62              	65.27%
Q5K782              	11.63%		H3GU09              	62.33%
Q5K790              	11.51%		H3H1R1              	55.25%
                    	       		H3GDX6              	55.06%
                    	       		H3H6M5              	54.73%
                    	       		H3GS99              	51.88%
                    	       		H3GL25              	51.26%
                    	       		H3GNF8              	51.26%
                    	       		H3GSA1              	50.88%
                    	       		H3GLW5              	50.31%
                    	       		H3GNG4              	50.02%
                    	       		H3GNG1              	49.83%
                    	       		H3GNG3              	49.79%
                    	       		H3GR90              	49.03%
                    	       		H3H0T2              	48.12%
                    	       		H3GNG6              	48.03%
                    	       		H3GNG2              	46.84%
                    	       		H3H672              	46.65%
                    	       		H3H2P6              	46.56%
                    	       		H3GD45              	46.36%
                    	       		H3H2W8              	45.37%
                    	       		H3H0T1              	45.32%
                    	       		H3GLT8              	45.23%
                    	       		H3GD44              	44.47%
                    	       		H3H1B8              	42.80%
                    	       		H3GK62              	42.09%
                    	       		H3GK63              	41.76%
                    	       		H3GK60              	40.10%
                    	       		H3GXR5              	39.62%
                    	       		H3GXR3              	39.52%
                    	       		H3GFN6              	37.58%
                    	       		H3GSR4              	36.72%
                    	       		H3H0T0              	35.68%
                    	       		H3GXY8              	28.41%
                    	       		H3H675              	23.75%
                    	       		H3GXU4              	22.99%
                    	       		H3GP04              	22.00%
                    	       		H3H939              	21.47%
                    	       		H3H1B4              	20.00%
                    	       		H3H671              	15.11%
                    	       		H3H1N3              	13.59%
                    	       		H3H1N6              	13.59%
                    	       		H3H0F9              	13.49%
                    	       		H3H0G1              	13.49%
                    	       		H3H1M7              	13.35%
                    	       		H3GUB1              	13.30%
                    	       		H3H1N1              	13.30%
                    	       		H3H747              	13.11%
                    	       		H3H801              	13.09%
                    	       		H3H1N0              	12.78%
                    	       		H3H5M8              	12.59%
                    	       		H3GNG5              	11.50%
                    	       		H3H8K6              	8.60%
                    	       		H3H0R6              	5.84%
Bootstrap support for Q5KNB3 as seed ortholog is 99%.
Bootstrap support for Q5K896 as seed ortholog is 99%.
Bootstrap support for H3GLZ4 as seed ortholog is 99%.
Bootstrap support for H3H6S7 as seed ortholog is 99%.

Group of orthologs #176. Best score 557 bits
Score difference with first non-orthologous sequence - C.neoformans:557 P.ramorum:452

P0CP46              	100.00%		H3GAU6              	100.00%
Bootstrap support for P0CP46 as seed ortholog is 100%.
Bootstrap support for H3GAU6 as seed ortholog is 100%.

Group of orthologs #177. Best score 553 bits
Score difference with first non-orthologous sequence - C.neoformans:361 P.ramorum:305

P0CQ74              	100.00%		H3G780              	100.00%
Bootstrap support for P0CQ74 as seed ortholog is 100%.
Bootstrap support for H3G780 as seed ortholog is 100%.

Group of orthologs #178. Best score 549 bits
Score difference with first non-orthologous sequence - C.neoformans:549 P.ramorum:84

Q5KP44              	100.00%		H3G9N6              	100.00%
Bootstrap support for Q5KP44 as seed ortholog is 100%.
Bootstrap support for H3G9N6 as seed ortholog is 99%.

Group of orthologs #179. Best score 549 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.ramorum:162

Q5KLG6              	100.00%		H3GEM0              	100.00%
Bootstrap support for Q5KLG6 as seed ortholog is 99%.
Bootstrap support for H3GEM0 as seed ortholog is 99%.

Group of orthologs #180. Best score 545 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.ramorum:233

Q5KBN2              	100.00%		H3G873              	100.00%
Q5KIR5              	11.48%		
Bootstrap support for Q5KBN2 as seed ortholog is 100%.
Bootstrap support for H3G873 as seed ortholog is 100%.

Group of orthologs #181. Best score 545 bits
Score difference with first non-orthologous sequence - C.neoformans:545 P.ramorum:139

Q5K7K5              	100.00%		H3GAR9              	100.00%
Bootstrap support for Q5K7K5 as seed ortholog is 100%.
Bootstrap support for H3GAR9 as seed ortholog is 99%.

Group of orthologs #182. Best score 545 bits
Score difference with first non-orthologous sequence - C.neoformans:545 P.ramorum:545

Q5KJR9              	100.00%		H3G9F4              	100.00%
Bootstrap support for Q5KJR9 as seed ortholog is 100%.
Bootstrap support for H3G9F4 as seed ortholog is 100%.

Group of orthologs #183. Best score 544 bits
Score difference with first non-orthologous sequence - C.neoformans:544 P.ramorum:544

Q5K9E3              	100.00%		H3G9A1              	100.00%
Bootstrap support for Q5K9E3 as seed ortholog is 100%.
Bootstrap support for H3G9A1 as seed ortholog is 100%.

Group of orthologs #184. Best score 543 bits
Score difference with first non-orthologous sequence - C.neoformans:543 P.ramorum:224

Q5KD10              	100.00%		H3G8X1              	100.00%
Bootstrap support for Q5KD10 as seed ortholog is 100%.
Bootstrap support for H3G8X1 as seed ortholog is 100%.

Group of orthologs #185. Best score 543 bits
Score difference with first non-orthologous sequence - C.neoformans:375 P.ramorum:256

Q5KEQ3              	100.00%		H3G8S6              	100.00%
Bootstrap support for Q5KEQ3 as seed ortholog is 100%.
Bootstrap support for H3G8S6 as seed ortholog is 99%.

Group of orthologs #186. Best score 542 bits
Score difference with first non-orthologous sequence - C.neoformans:542 P.ramorum:230

Q5KMQ2              	100.00%		H3H2X5              	100.00%
Bootstrap support for Q5KMQ2 as seed ortholog is 100%.
Bootstrap support for H3H2X5 as seed ortholog is 99%.

Group of orthologs #187. Best score 541 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.ramorum:541

Q5KB11              	100.00%		H3G5C8              	100.00%
Bootstrap support for Q5KB11 as seed ortholog is 99%.
Bootstrap support for H3G5C8 as seed ortholog is 100%.

Group of orthologs #188. Best score 541 bits
Score difference with first non-orthologous sequence - C.neoformans:541 P.ramorum:541

Q5KGH2              	100.00%		H3GND3              	100.00%
Bootstrap support for Q5KGH2 as seed ortholog is 100%.
Bootstrap support for H3GND3 as seed ortholog is 100%.

Group of orthologs #189. Best score 540 bits
Score difference with first non-orthologous sequence - C.neoformans:540 P.ramorum:540

Q5K899              	100.00%		H3G8W2              	100.00%
Bootstrap support for Q5K899 as seed ortholog is 100%.
Bootstrap support for H3G8W2 as seed ortholog is 100%.

Group of orthologs #190. Best score 539 bits
Score difference with first non-orthologous sequence - C.neoformans:539 P.ramorum:236

Q5KHZ4              	100.00%		H3HDI7              	100.00%
                    	       		H3G8F1              	8.38%
Bootstrap support for Q5KHZ4 as seed ortholog is 100%.
Bootstrap support for H3HDI7 as seed ortholog is 100%.

Group of orthologs #191. Best score 539 bits
Score difference with first non-orthologous sequence - C.neoformans:539 P.ramorum:539

Q5KHJ6              	100.00%		H3GT27              	100.00%
Bootstrap support for Q5KHJ6 as seed ortholog is 100%.
Bootstrap support for H3GT27 as seed ortholog is 100%.

Group of orthologs #192. Best score 538 bits
Score difference with first non-orthologous sequence - C.neoformans:402 P.ramorum:399

Q5KF69              	100.00%		H3GAE2              	100.00%
Bootstrap support for Q5KF69 as seed ortholog is 100%.
Bootstrap support for H3GAE2 as seed ortholog is 100%.

Group of orthologs #193. Best score 537 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:81

Q5K8Q9              	100.00%		H3GAC2              	100.00%
Bootstrap support for Q5K8Q9 as seed ortholog is 99%.
Bootstrap support for H3GAC2 as seed ortholog is 95%.

Group of orthologs #194. Best score 537 bits
Score difference with first non-orthologous sequence - C.neoformans:537 P.ramorum:65

Q5KAU8              	100.00%		H3GN18              	100.00%
Bootstrap support for Q5KAU8 as seed ortholog is 100%.
Bootstrap support for H3GN18 as seed ortholog is 95%.

Group of orthologs #195. Best score 536 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.ramorum:44

Q5KGH3              	100.00%		H3G8L9              	100.00%
Bootstrap support for Q5KGH3 as seed ortholog is 100%.
Bootstrap support for H3G8L9 as seed ortholog is 95%.

Group of orthologs #196. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:535 P.ramorum:477

P0CO08              	100.00%		H3G9H3              	100.00%
Bootstrap support for P0CO08 as seed ortholog is 100%.
Bootstrap support for H3G9H3 as seed ortholog is 100%.

Group of orthologs #197. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:535 P.ramorum:535

Q5KMG4              	100.00%		H3G5V5              	100.00%
Bootstrap support for Q5KMG4 as seed ortholog is 100%.
Bootstrap support for H3G5V5 as seed ortholog is 100%.

Group of orthologs #198. Best score 535 bits
Score difference with first non-orthologous sequence - C.neoformans:439 P.ramorum:392

Q5KHV9              	100.00%		H3GAT7              	100.00%
Bootstrap support for Q5KHV9 as seed ortholog is 100%.
Bootstrap support for H3GAT7 as seed ortholog is 100%.

Group of orthologs #199. Best score 534 bits
Score difference with first non-orthologous sequence - C.neoformans:534 P.ramorum:534

P0CQ36              	100.00%		H3G5G0              	100.00%
Bootstrap support for P0CQ36 as seed ortholog is 100%.
Bootstrap support for H3G5G0 as seed ortholog is 100%.

Group of orthologs #200. Best score 534 bits
Score difference with first non-orthologous sequence - C.neoformans:534 P.ramorum:534

Q5KDR3              	100.00%		H3G8H8              	100.00%
Bootstrap support for Q5KDR3 as seed ortholog is 100%.
Bootstrap support for H3G8H8 as seed ortholog is 100%.

Group of orthologs #201. Best score 534 bits
Score difference with first non-orthologous sequence - C.neoformans:534 P.ramorum:534

Q5K9K1              	100.00%		H3GYM4              	100.00%
Bootstrap support for Q5K9K1 as seed ortholog is 100%.
Bootstrap support for H3GYM4 as seed ortholog is 100%.

Group of orthologs #202. Best score 531 bits
Score difference with first non-orthologous sequence - C.neoformans:531 P.ramorum:531

Q5KCG5              	100.00%		H3GA05              	100.00%
Bootstrap support for Q5KCG5 as seed ortholog is 100%.
Bootstrap support for H3GA05 as seed ortholog is 100%.

Group of orthologs #203. Best score 531 bits
Score difference with first non-orthologous sequence - C.neoformans:531 P.ramorum:481

Q5KIW8              	100.00%		H3G8J5              	100.00%
Bootstrap support for Q5KIW8 as seed ortholog is 100%.
Bootstrap support for H3G8J5 as seed ortholog is 100%.

Group of orthologs #204. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:530 P.ramorum:399

Q5K8D2              	100.00%		H3G5E1              	100.00%
Bootstrap support for Q5K8D2 as seed ortholog is 100%.
Bootstrap support for H3G5E1 as seed ortholog is 100%.

Group of orthologs #205. Best score 530 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:11

Q5KLA7              	100.00%		H3GAG9              	100.00%
Bootstrap support for Q5KLA7 as seed ortholog is 99%.
Bootstrap support for H3GAG9 as seed ortholog is 37%.
Alternative seed ortholog is H3GAT5 (11 bits away from this cluster)

Group of orthologs #206. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:529 P.ramorum:161

Q5KE28              	100.00%		H3G7P5              	100.00%
Bootstrap support for Q5KE28 as seed ortholog is 100%.
Bootstrap support for H3G7P5 as seed ortholog is 99%.

Group of orthologs #207. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:529 P.ramorum:529

Q5KP62              	100.00%		H3GA19              	100.00%
Bootstrap support for Q5KP62 as seed ortholog is 100%.
Bootstrap support for H3GA19 as seed ortholog is 100%.

Group of orthologs #208. Best score 529 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.ramorum:205

Q5K7L0              	100.00%		H3GY14              	100.00%
Bootstrap support for Q5K7L0 as seed ortholog is 100%.
Bootstrap support for H3GY14 as seed ortholog is 100%.

Group of orthologs #209. Best score 527 bits
Score difference with first non-orthologous sequence - C.neoformans:527 P.ramorum:383

Q5KDQ7              	100.00%		H3G8R2              	100.00%
Bootstrap support for Q5KDQ7 as seed ortholog is 100%.
Bootstrap support for H3G8R2 as seed ortholog is 100%.

Group of orthologs #210. Best score 527 bits
Score difference with first non-orthologous sequence - C.neoformans:527 P.ramorum:527

Q5KKS9              	100.00%		H3GXS1              	100.00%
Bootstrap support for Q5KKS9 as seed ortholog is 100%.
Bootstrap support for H3GXS1 as seed ortholog is 100%.

Group of orthologs #211. Best score 525 bits
Score difference with first non-orthologous sequence - C.neoformans:525 P.ramorum:525

Q5K7B5              	100.00%		H3HD79              	100.00%
Bootstrap support for Q5K7B5 as seed ortholog is 100%.
Bootstrap support for H3HD79 as seed ortholog is 100%.

Group of orthologs #212. Best score 524 bits
Score difference with first non-orthologous sequence - C.neoformans:524 P.ramorum:524

Q5KEU7              	100.00%		H3H0Z5              	100.00%
Bootstrap support for Q5KEU7 as seed ortholog is 100%.
Bootstrap support for H3H0Z5 as seed ortholog is 100%.

Group of orthologs #213. Best score 522 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.ramorum:111

Q5K722              	100.00%		H3G910              	100.00%
                    	       		H3GCI6              	61.06%
Bootstrap support for Q5K722 as seed ortholog is 100%.
Bootstrap support for H3G910 as seed ortholog is 93%.

Group of orthologs #214. Best score 520 bits
Score difference with first non-orthologous sequence - C.neoformans:520 P.ramorum:278

Q5KFS5              	100.00%		H3G8E4              	100.00%
Bootstrap support for Q5KFS5 as seed ortholog is 100%.
Bootstrap support for H3G8E4 as seed ortholog is 100%.

Group of orthologs #215. Best score 517 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.ramorum:333

Q5KHC6              	100.00%		H3G8T0              	100.00%
Bootstrap support for Q5KHC6 as seed ortholog is 99%.
Bootstrap support for H3G8T0 as seed ortholog is 100%.

Group of orthologs #216. Best score 516 bits
Score difference with first non-orthologous sequence - C.neoformans:516 P.ramorum:516

Q5KKR7              	100.00%		H3GVH6              	100.00%
Bootstrap support for Q5KKR7 as seed ortholog is 100%.
Bootstrap support for H3GVH6 as seed ortholog is 100%.

Group of orthologs #217. Best score 516 bits
Score difference with first non-orthologous sequence - C.neoformans:516 P.ramorum:516

Q5KMJ4              	100.00%		H3HC02              	100.00%
Bootstrap support for Q5KMJ4 as seed ortholog is 100%.
Bootstrap support for H3HC02 as seed ortholog is 100%.

Group of orthologs #218. Best score 514 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:111

Q5KEX3              	100.00%		H3G8I6              	100.00%
                    	       		H3G8I3              	72.32%
                    	       		H3G8I2              	63.09%
                    	       		H3G5S9              	49.79%
                    	       		H3H3Z3              	7.94%
Bootstrap support for Q5KEX3 as seed ortholog is 96%.
Bootstrap support for H3G8I6 as seed ortholog is 99%.

Group of orthologs #219. Best score 513 bits
Score difference with first non-orthologous sequence - C.neoformans:513 P.ramorum:513

Q5KKB4              	100.00%		H3G986              	100.00%
Bootstrap support for Q5KKB4 as seed ortholog is 100%.
Bootstrap support for H3G986 as seed ortholog is 100%.

Group of orthologs #220. Best score 511 bits
Score difference with first non-orthologous sequence - C.neoformans:511 P.ramorum:511

Q5K7C3              	100.00%		H3G7E8              	100.00%
Bootstrap support for Q5K7C3 as seed ortholog is 100%.
Bootstrap support for H3G7E8 as seed ortholog is 100%.

Group of orthologs #221. Best score 509 bits
Score difference with first non-orthologous sequence - C.neoformans:409 P.ramorum:328

Q5KB93              	100.00%		H3G9P8              	100.00%
Bootstrap support for Q5KB93 as seed ortholog is 100%.
Bootstrap support for H3G9P8 as seed ortholog is 100%.

Group of orthologs #222. Best score 507 bits
Score difference with first non-orthologous sequence - C.neoformans:507 P.ramorum:347

Q5K7R3              	100.00%		H3G8D8              	100.00%
Bootstrap support for Q5K7R3 as seed ortholog is 100%.
Bootstrap support for H3G8D8 as seed ortholog is 100%.

Group of orthologs #223. Best score 507 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.ramorum:307

P0CQ92              	100.00%		H3GVG1              	100.00%
Bootstrap support for P0CQ92 as seed ortholog is 100%.
Bootstrap support for H3GVG1 as seed ortholog is 100%.

Group of orthologs #224. Best score 505 bits
Score difference with first non-orthologous sequence - C.neoformans:505 P.ramorum:505

Q5KD48              	100.00%		H3G9N7              	100.00%
Bootstrap support for Q5KD48 as seed ortholog is 100%.
Bootstrap support for H3G9N7 as seed ortholog is 100%.

Group of orthologs #225. Best score 505 bits
Score difference with first non-orthologous sequence - C.neoformans:421 P.ramorum:131

Q5KJ82              	100.00%		H3GA43              	100.00%
Bootstrap support for Q5KJ82 as seed ortholog is 100%.
Bootstrap support for H3GA43 as seed ortholog is 99%.

Group of orthologs #226. Best score 505 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:332

Q5KNA9              	100.00%		H3G893              	100.00%
Bootstrap support for Q5KNA9 as seed ortholog is 100%.
Bootstrap support for H3G893 as seed ortholog is 100%.

Group of orthologs #227. Best score 504 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.ramorum:13

Q5KF65              	100.00%		H3G8M9              	100.00%
Bootstrap support for Q5KF65 as seed ortholog is 74%.
Alternative seed ortholog is Q5KD72 (33 bits away from this cluster)
Bootstrap support for H3G8M9 as seed ortholog is 65%.
Alternative seed ortholog is H3G8C8 (13 bits away from this cluster)

Group of orthologs #228. Best score 503 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.ramorum:304

P0CR00              	100.00%		H3GTT0              	100.00%
Bootstrap support for P0CR00 as seed ortholog is 100%.
Bootstrap support for H3GTT0 as seed ortholog is 100%.

Group of orthologs #229. Best score 502 bits
Score difference with first non-orthologous sequence - C.neoformans:502 P.ramorum:502

Q5KK44              	100.00%		H3GG74              	100.00%
Q5KK43              	53.93%		
Bootstrap support for Q5KK44 as seed ortholog is 100%.
Bootstrap support for H3GG74 as seed ortholog is 100%.

Group of orthologs #230. Best score 502 bits
Score difference with first non-orthologous sequence - C.neoformans:502 P.ramorum:502

Q5KQ45              	100.00%		H3G951              	100.00%
Bootstrap support for Q5KQ45 as seed ortholog is 100%.
Bootstrap support for H3G951 as seed ortholog is 100%.

Group of orthologs #231. Best score 501 bits
Score difference with first non-orthologous sequence - C.neoformans:501 P.ramorum:501

Q5KGK2              	100.00%		H3G5Z0              	100.00%
Bootstrap support for Q5KGK2 as seed ortholog is 100%.
Bootstrap support for H3G5Z0 as seed ortholog is 100%.

Group of orthologs #232. Best score 498 bits
Score difference with first non-orthologous sequence - C.neoformans:498 P.ramorum:152

Q5KE01              	100.00%		H3GAQ8              	100.00%
Bootstrap support for Q5KE01 as seed ortholog is 100%.
Bootstrap support for H3GAQ8 as seed ortholog is 99%.

Group of orthologs #233. Best score 498 bits
Score difference with first non-orthologous sequence - C.neoformans:498 P.ramorum:498

Q5KK90              	100.00%		H3G852              	100.00%
Bootstrap support for Q5KK90 as seed ortholog is 100%.
Bootstrap support for H3G852 as seed ortholog is 100%.

Group of orthologs #234. Best score 497 bits
Score difference with first non-orthologous sequence - C.neoformans:497 P.ramorum:239

Q5KLJ0              	100.00%		H3G5M4              	100.00%
Bootstrap support for Q5KLJ0 as seed ortholog is 100%.
Bootstrap support for H3G5M4 as seed ortholog is 99%.

Group of orthologs #235. Best score 495 bits
Score difference with first non-orthologous sequence - C.neoformans:495 P.ramorum:495

P0CO94              	100.00%		H3G7L1              	100.00%
Bootstrap support for P0CO94 as seed ortholog is 100%.
Bootstrap support for H3G7L1 as seed ortholog is 100%.

Group of orthologs #236. Best score 495 bits
Score difference with first non-orthologous sequence - C.neoformans:495 P.ramorum:495

Q5KMM8              	100.00%		H3GCS0              	100.00%
Bootstrap support for Q5KMM8 as seed ortholog is 100%.
Bootstrap support for H3GCS0 as seed ortholog is 100%.

Group of orthologs #237. Best score 494 bits
Score difference with first non-orthologous sequence - C.neoformans:494 P.ramorum:494

Q5KK07              	100.00%		H3G9Y9              	100.00%
Bootstrap support for Q5KK07 as seed ortholog is 100%.
Bootstrap support for H3G9Y9 as seed ortholog is 100%.

Group of orthologs #238. Best score 494 bits
Score difference with first non-orthologous sequence - C.neoformans:494 P.ramorum:494

Q5KNE3              	100.00%		H3G863              	100.00%
Bootstrap support for Q5KNE3 as seed ortholog is 100%.
Bootstrap support for H3G863 as seed ortholog is 100%.

Group of orthologs #239. Best score 493 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:167

P0CR40              	100.00%		H3GG43              	100.00%
Bootstrap support for P0CR40 as seed ortholog is 99%.
Bootstrap support for H3GG43 as seed ortholog is 99%.

Group of orthologs #240. Best score 493 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.ramorum:493

Q5KN74              	100.00%		H3GTV2              	100.00%
Bootstrap support for Q5KN74 as seed ortholog is 100%.
Bootstrap support for H3GTV2 as seed ortholog is 100%.

Group of orthologs #241. Best score 492 bits
Score difference with first non-orthologous sequence - C.neoformans:492 P.ramorum:29

Q5KBX3              	100.00%		H3GTE0              	100.00%
                    	       		H3GEV6              	6.88%
Bootstrap support for Q5KBX3 as seed ortholog is 100%.
Bootstrap support for H3GTE0 as seed ortholog is 77%.

Group of orthologs #242. Best score 492 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:492

Q5K9A8              	100.00%		H3G5M3              	100.00%
Bootstrap support for Q5K9A8 as seed ortholog is 99%.
Bootstrap support for H3G5M3 as seed ortholog is 100%.

Group of orthologs #243. Best score 492 bits
Score difference with first non-orthologous sequence - C.neoformans:492 P.ramorum:492

Q5KM80              	100.00%		H3GIM1              	100.00%
Bootstrap support for Q5KM80 as seed ortholog is 100%.
Bootstrap support for H3GIM1 as seed ortholog is 100%.

Group of orthologs #244. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:413 P.ramorum:297

Q5KDR8              	100.00%		H3GQ69              	100.00%
                    	       		H3G9H5              	89.05%
Bootstrap support for Q5KDR8 as seed ortholog is 100%.
Bootstrap support for H3GQ69 as seed ortholog is 100%.

Group of orthologs #245. Best score 491 bits
Score difference with first non-orthologous sequence - C.neoformans:491 P.ramorum:491

Q5KK33              	100.00%		H3G8W5              	100.00%
Bootstrap support for Q5KK33 as seed ortholog is 100%.
Bootstrap support for H3G8W5 as seed ortholog is 100%.

Group of orthologs #246. Best score 490 bits
Score difference with first non-orthologous sequence - C.neoformans:490 P.ramorum:490

P0CS78              	100.00%		H3GC19              	100.00%
Bootstrap support for P0CS78 as seed ortholog is 100%.
Bootstrap support for H3GC19 as seed ortholog is 100%.

Group of orthologs #247. Best score 490 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.ramorum:87

Q5KP72              	100.00%		H3HDB5              	100.00%
Bootstrap support for Q5KP72 as seed ortholog is 100%.
Bootstrap support for H3HDB5 as seed ortholog is 99%.

Group of orthologs #248. Best score 489 bits
Score difference with first non-orthologous sequence - C.neoformans:407 P.ramorum:107

Q5KCK2              	100.00%		H3GKG8              	100.00%
                    	       		H3GKG6              	77.79%
Bootstrap support for Q5KCK2 as seed ortholog is 100%.
Bootstrap support for H3GKG8 as seed ortholog is 95%.

Group of orthologs #249. Best score 487 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:487

Q5KFZ4              	100.00%		H3G6S6              	100.00%
Bootstrap support for Q5KFZ4 as seed ortholog is 100%.
Bootstrap support for H3G6S6 as seed ortholog is 100%.

Group of orthologs #250. Best score 487 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.ramorum:354

Q5KI40              	100.00%		H3HDS0              	100.00%
Bootstrap support for Q5KI40 as seed ortholog is 99%.
Bootstrap support for H3HDS0 as seed ortholog is 100%.

Group of orthologs #251. Best score 485 bits
Score difference with first non-orthologous sequence - C.neoformans:485 P.ramorum:485

P0CM88              	100.00%		H3G835              	100.00%
Bootstrap support for P0CM88 as seed ortholog is 100%.
Bootstrap support for H3G835 as seed ortholog is 100%.

Group of orthologs #252. Best score 485 bits
Score difference with first non-orthologous sequence - C.neoformans:485 P.ramorum:485

Q5KNA0              	100.00%		H3G8H1              	100.00%
Bootstrap support for Q5KNA0 as seed ortholog is 100%.
Bootstrap support for H3G8H1 as seed ortholog is 100%.

Group of orthologs #253. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.ramorum:312

Q5KAP2              	100.00%		H3G4Y1              	100.00%
Bootstrap support for Q5KAP2 as seed ortholog is 100%.
Bootstrap support for H3G4Y1 as seed ortholog is 100%.

Group of orthologs #254. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.ramorum:98

Q5KD59              	100.00%		H3G924              	100.00%
Bootstrap support for Q5KD59 as seed ortholog is 100%.
Bootstrap support for H3G924 as seed ortholog is 88%.

Group of orthologs #255. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.ramorum:483

Q5KJ87              	100.00%		H3G8U2              	100.00%
Bootstrap support for Q5KJ87 as seed ortholog is 100%.
Bootstrap support for H3G8U2 as seed ortholog is 100%.

Group of orthologs #256. Best score 483 bits
Score difference with first non-orthologous sequence - C.neoformans:483 P.ramorum:483

Q5KII4              	100.00%		H3GU36              	100.00%
Bootstrap support for Q5KII4 as seed ortholog is 100%.
Bootstrap support for H3GU36 as seed ortholog is 100%.

Group of orthologs #257. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:482 P.ramorum:482

Q5KCT5              	100.00%		H3GTV1              	100.00%
Bootstrap support for Q5KCT5 as seed ortholog is 100%.
Bootstrap support for H3GTV1 as seed ortholog is 100%.

Group of orthologs #258. Best score 482 bits
Score difference with first non-orthologous sequence - C.neoformans:482 P.ramorum:482

Q5KM37              	100.00%		H3H3A8              	100.00%
Bootstrap support for Q5KM37 as seed ortholog is 100%.
Bootstrap support for H3H3A8 as seed ortholog is 100%.

Group of orthologs #259. Best score 481 bits
Score difference with first non-orthologous sequence - C.neoformans:481 P.ramorum:481

Q5KF37              	100.00%		H3G7L0              	100.00%
Bootstrap support for Q5KF37 as seed ortholog is 100%.
Bootstrap support for H3G7L0 as seed ortholog is 100%.

Group of orthologs #260. Best score 481 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.ramorum:246

P0CQ82              	100.00%		H3HAQ3              	100.00%
Bootstrap support for P0CQ82 as seed ortholog is 100%.
Bootstrap support for H3HAQ3 as seed ortholog is 100%.

Group of orthologs #261. Best score 479 bits
Score difference with first non-orthologous sequence - C.neoformans:479 P.ramorum:479

Q5KB99              	100.00%		H3G762              	100.00%
Bootstrap support for Q5KB99 as seed ortholog is 100%.
Bootstrap support for H3G762 as seed ortholog is 100%.

Group of orthologs #262. Best score 478 bits
Score difference with first non-orthologous sequence - C.neoformans:478 P.ramorum:478

Q5KMC0              	100.00%		H3GR02              	100.00%
Bootstrap support for Q5KMC0 as seed ortholog is 100%.
Bootstrap support for H3GR02 as seed ortholog is 100%.

Group of orthologs #263. Best score 478 bits
Score difference with first non-orthologous sequence - C.neoformans:478 P.ramorum:478

Q5KIN6              	100.00%		H3GUI9              	100.00%
Bootstrap support for Q5KIN6 as seed ortholog is 100%.
Bootstrap support for H3GUI9 as seed ortholog is 100%.

Group of orthologs #264. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.ramorum:477

Q5K9L7              	100.00%		H3G764              	100.00%
Q5KMG8              	30.80%		H3G9R8              	80.67%
Bootstrap support for Q5K9L7 as seed ortholog is 100%.
Bootstrap support for H3G764 as seed ortholog is 100%.

Group of orthologs #265. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.ramorum:477

Q5KDP3              	100.00%		H3G751              	100.00%
Bootstrap support for Q5KDP3 as seed ortholog is 100%.
Bootstrap support for H3G751 as seed ortholog is 100%.

Group of orthologs #266. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:367 P.ramorum:361

Q5KEK9              	100.00%		H3GAL0              	100.00%
Bootstrap support for Q5KEK9 as seed ortholog is 100%.
Bootstrap support for H3GAL0 as seed ortholog is 100%.

Group of orthologs #267. Best score 477 bits
Score difference with first non-orthologous sequence - C.neoformans:477 P.ramorum:281

Q5KEF7              	100.00%		H3GFB0              	100.00%
Bootstrap support for Q5KEF7 as seed ortholog is 100%.
Bootstrap support for H3GFB0 as seed ortholog is 100%.

Group of orthologs #268. Best score 476 bits
Score difference with first non-orthologous sequence - C.neoformans:476 P.ramorum:196

Q5KH88              	100.00%		H3G8X6              	100.00%
                    	       		H3G7A9              	14.95%
Bootstrap support for Q5KH88 as seed ortholog is 100%.
Bootstrap support for H3G8X6 as seed ortholog is 99%.

Group of orthologs #269. Best score 476 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.ramorum:399

Q5KHJ1              	100.00%		H3G8K3              	100.00%
Bootstrap support for Q5KHJ1 as seed ortholog is 100%.
Bootstrap support for H3G8K3 as seed ortholog is 100%.

Group of orthologs #270. Best score 475 bits
Score difference with first non-orthologous sequence - C.neoformans:475 P.ramorum:475

Q5KNJ3              	100.00%		H3G8V9              	100.00%
Bootstrap support for Q5KNJ3 as seed ortholog is 100%.
Bootstrap support for H3G8V9 as seed ortholog is 100%.

Group of orthologs #271. Best score 475 bits
Score difference with first non-orthologous sequence - C.neoformans:416 P.ramorum:475

Q5KMW2              	100.00%		H3G9S8              	100.00%
Bootstrap support for Q5KMW2 as seed ortholog is 100%.
Bootstrap support for H3G9S8 as seed ortholog is 100%.

Group of orthologs #272. Best score 472 bits
Score difference with first non-orthologous sequence - C.neoformans:352 P.ramorum:472

Q5K8Q2              	100.00%		H3G9P9              	100.00%
                    	       		H3GB14              	100.00%
Bootstrap support for Q5K8Q2 as seed ortholog is 100%.
Bootstrap support for H3G9P9 as seed ortholog is 100%.
Bootstrap support for H3GB14 as seed ortholog is 100%.

Group of orthologs #273. Best score 471 bits
Score difference with first non-orthologous sequence - C.neoformans:471 P.ramorum:471

Q5KAB8              	100.00%		H3GA76              	100.00%
Bootstrap support for Q5KAB8 as seed ortholog is 100%.
Bootstrap support for H3GA76 as seed ortholog is 100%.

Group of orthologs #274. Best score 471 bits
Score difference with first non-orthologous sequence - C.neoformans:471 P.ramorum:471

Q5KGH1              	100.00%		H3G9L9              	100.00%
Bootstrap support for Q5KGH1 as seed ortholog is 100%.
Bootstrap support for H3G9L9 as seed ortholog is 100%.

Group of orthologs #275. Best score 470 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:405

Q5KK89              	100.00%		H3GA94              	100.00%
                    	       		H3G7R9              	58.84%
Bootstrap support for Q5KK89 as seed ortholog is 92%.
Bootstrap support for H3GA94 as seed ortholog is 100%.

Group of orthologs #276. Best score 469 bits
Score difference with first non-orthologous sequence - C.neoformans:469 P.ramorum:469

Q5KF19              	100.00%		H3G8E8              	100.00%
Bootstrap support for Q5KF19 as seed ortholog is 100%.
Bootstrap support for H3G8E8 as seed ortholog is 100%.

Group of orthologs #277. Best score 468 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.ramorum:468

Q5K7X5              	100.00%		H3G9S1              	100.00%
Q5K826              	34.17%		
Bootstrap support for Q5K7X5 as seed ortholog is 100%.
Bootstrap support for H3G9S1 as seed ortholog is 100%.

Group of orthologs #278. Best score 466 bits
Score difference with first non-orthologous sequence - C.neoformans:466 P.ramorum:466

Q5KI16              	100.00%		H3HDS6              	100.00%
Bootstrap support for Q5KI16 as seed ortholog is 100%.
Bootstrap support for H3HDS6 as seed ortholog is 100%.

Group of orthologs #279. Best score 465 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:465

Q5KHM9              	100.00%		H3H2Y0              	100.00%
Bootstrap support for Q5KHM9 as seed ortholog is 94%.
Bootstrap support for H3H2Y0 as seed ortholog is 100%.

Group of orthologs #280. Best score 464 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.ramorum:9

Q5KIF1              	100.00%		H3GX44              	100.00%
                    	       		H3GX43              	66.84%
                    	       		H3GU93              	39.34%
                    	       		H3H4Q2              	25.73%
Bootstrap support for Q5KIF1 as seed ortholog is 100%.
Bootstrap support for H3GX44 as seed ortholog is 57%.
Alternative seed ortholog is H3HBW2 (9 bits away from this cluster)

Group of orthologs #281. Best score 462 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:184

Q5KBZ0              	100.00%		H3GA49              	100.00%
Q5KIV9              	9.40%		H3G616              	11.35%
Bootstrap support for Q5KBZ0 as seed ortholog is 99%.
Bootstrap support for H3GA49 as seed ortholog is 100%.

Group of orthologs #282. Best score 462 bits
Score difference with first non-orthologous sequence - C.neoformans:462 P.ramorum:83

Q5KHP4              	100.00%		H3H2D8              	100.00%
Bootstrap support for Q5KHP4 as seed ortholog is 100%.
Bootstrap support for H3H2D8 as seed ortholog is 91%.

Group of orthologs #283. Best score 461 bits
Score difference with first non-orthologous sequence - C.neoformans:461 P.ramorum:461

P0CN84              	100.00%		H3GAH2              	100.00%
                    	       		H3GAH1              	91.55%
Bootstrap support for P0CN84 as seed ortholog is 100%.
Bootstrap support for H3GAH2 as seed ortholog is 100%.

Group of orthologs #284. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.ramorum:460

Q5KAU9              	100.00%		H3G7Y5              	100.00%
Bootstrap support for Q5KAU9 as seed ortholog is 100%.
Bootstrap support for H3G7Y5 as seed ortholog is 100%.

Group of orthologs #285. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.ramorum:460

Q5KED7              	100.00%		H3G847              	100.00%
Bootstrap support for Q5KED7 as seed ortholog is 100%.
Bootstrap support for H3G847 as seed ortholog is 100%.

Group of orthologs #286. Best score 460 bits
Score difference with first non-orthologous sequence - C.neoformans:460 P.ramorum:460

P0CM38              	100.00%		H3GPE9              	100.00%
Bootstrap support for P0CM38 as seed ortholog is 100%.
Bootstrap support for H3GPE9 as seed ortholog is 100%.

Group of orthologs #287. Best score 457 bits
Score difference with first non-orthologous sequence - C.neoformans:457 P.ramorum:457

P0CP26              	100.00%		H3G8P9              	100.00%
Bootstrap support for P0CP26 as seed ortholog is 100%.
Bootstrap support for H3G8P9 as seed ortholog is 100%.

Group of orthologs #288. Best score 457 bits
Score difference with first non-orthologous sequence - C.neoformans:457 P.ramorum:457

Q5K757              	100.00%		H3GW62              	100.00%
Bootstrap support for Q5K757 as seed ortholog is 100%.
Bootstrap support for H3GW62 as seed ortholog is 100%.

Group of orthologs #289. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:454 P.ramorum:179

Q5K707              	100.00%		H3G8L6              	100.00%
                    	       		H3GAH4              	25.16%
Bootstrap support for Q5K707 as seed ortholog is 100%.
Bootstrap support for H3G8L6 as seed ortholog is 100%.

Group of orthologs #290. Best score 454 bits
Score difference with first non-orthologous sequence - C.neoformans:290 P.ramorum:211

P0CQ88              	100.00%		H3GWG5              	100.00%
Bootstrap support for P0CQ88 as seed ortholog is 100%.
Bootstrap support for H3GWG5 as seed ortholog is 99%.

Group of orthologs #291. Best score 453 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:8

Q5KF44              	100.00%		H3GK47              	100.00%
                    	       		H3H5J1              	53.73%
                    	       		H3GD69              	44.29%
                    	       		H3GCV8              	44.22%
                    	       		H3H1W0              	43.44%
                    	       		H3GYR9              	42.02%
                    	       		H3H3W5              	39.11%
                    	       		H3GRT6              	36.83%
                    	       		H3GQN4              	34.14%
                    	       		H3H6U5              	33.00%
                    	       		H3H7S3              	27.40%
                    	       		H3GBI2              	22.29%
                    	       		H3GS35              	21.15%
                    	       		H3H694              	19.66%
                    	       		H3H9P3              	17.39%
                    	       		H3GYC8              	17.10%
                    	       		H3GE80              	13.56%
                    	       		H3H693              	11.92%
                    	       		H3GV16              	10.86%
                    	       		H3H6I7              	8.37%
                    	       		H3GEC9              	8.30%
                    	       		H3GKD4              	6.88%
                    	       		H3GCM6              	6.46%
                    	       		H3H1U4              	5.89%
                    	       		H3H933              	5.46%
Bootstrap support for Q5KF44 as seed ortholog is 93%.
Bootstrap support for H3GK47 as seed ortholog is 59%.
Alternative seed ortholog is H3H2L9 (8 bits away from this cluster)

Group of orthologs #292. Best score 452 bits
Score difference with first non-orthologous sequence - C.neoformans:452 P.ramorum:452

Q5KB69              	100.00%		H3G8U5              	100.00%
                    	       		H3G9G9              	47.70%
                    	       		H3G9H0              	47.54%
Bootstrap support for Q5KB69 as seed ortholog is 100%.
Bootstrap support for H3G8U5 as seed ortholog is 100%.

Group of orthologs #293. Best score 452 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:4

P0CN74              	100.00%		H3G874              	100.00%
Bootstrap support for P0CN74 as seed ortholog is 100%.
Bootstrap support for H3G874 as seed ortholog is 54%.
Alternative seed ortholog is H3G963 (4 bits away from this cluster)

Group of orthologs #294. Best score 452 bits
Score difference with first non-orthologous sequence - C.neoformans:390 P.ramorum:343

Q5KCJ8              	100.00%		H3G5G7              	100.00%
Bootstrap support for Q5KCJ8 as seed ortholog is 100%.
Bootstrap support for H3G5G7 as seed ortholog is 100%.

Group of orthologs #295. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.ramorum:44

Q5KCZ4              	100.00%		H3G9K6              	100.00%
Bootstrap support for Q5KCZ4 as seed ortholog is 100%.
Bootstrap support for H3G9K6 as seed ortholog is 89%.

Group of orthologs #296. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.ramorum:451

Q5KKA5              	100.00%		H3G756              	100.00%
Bootstrap support for Q5KKA5 as seed ortholog is 100%.
Bootstrap support for H3G756 as seed ortholog is 100%.

Group of orthologs #297. Best score 451 bits
Score difference with first non-orthologous sequence - C.neoformans:451 P.ramorum:451

Q5KIZ9              	100.00%		H3GCM9              	100.00%
Bootstrap support for Q5KIZ9 as seed ortholog is 100%.
Bootstrap support for H3GCM9 as seed ortholog is 100%.

Group of orthologs #298. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:450 P.ramorum:81

Q5KJI1              	100.00%		H3H128              	100.00%
                    	       		H3GVD7              	10.39%
                    	       		H3GJS3              	8.37%
                    	       		H3GLV4              	8.08%
Bootstrap support for Q5KJI1 as seed ortholog is 100%.
Bootstrap support for H3H128 as seed ortholog is 87%.

Group of orthologs #299. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:450 P.ramorum:450

P0CP20              	100.00%		H3GA60              	100.00%
                    	       		H3GXA3              	27.86%
Bootstrap support for P0CP20 as seed ortholog is 100%.
Bootstrap support for H3GA60 as seed ortholog is 100%.

Group of orthologs #300. Best score 450 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.ramorum:218

Q5KPW4              	100.00%		H3G8F5              	100.00%
Bootstrap support for Q5KPW4 as seed ortholog is 100%.
Bootstrap support for H3G8F5 as seed ortholog is 100%.

Group of orthologs #301. Best score 449 bits
Score difference with first non-orthologous sequence - C.neoformans:372 P.ramorum:30

Q5K9M8              	100.00%		H3G7Z0              	100.00%
Bootstrap support for Q5K9M8 as seed ortholog is 100%.
Bootstrap support for H3G7Z0 as seed ortholog is 73%.
Alternative seed ortholog is H3GVF8 (30 bits away from this cluster)

Group of orthologs #302. Best score 448 bits
Score difference with first non-orthologous sequence - C.neoformans:448 P.ramorum:448

Q5K6T7              	100.00%		H3GXM9              	100.00%
                    	       		H3GN43              	61.69%
                    	       		H3GLQ6              	20.72%
                    	       		H3GUE8              	16.83%
                    	       		H3GIY5              	10.75%
                    	       		H3GIY6              	10.73%
                    	       		H3GJ71              	6.40%
Bootstrap support for Q5K6T7 as seed ortholog is 100%.
Bootstrap support for H3GXM9 as seed ortholog is 100%.

Group of orthologs #303. Best score 448 bits
Score difference with first non-orthologous sequence - C.neoformans:448 P.ramorum:448

P0CR52              	100.00%		H3G9I3              	100.00%
Bootstrap support for P0CR52 as seed ortholog is 100%.
Bootstrap support for H3G9I3 as seed ortholog is 100%.

Group of orthologs #304. Best score 448 bits
Score difference with first non-orthologous sequence - C.neoformans:448 P.ramorum:448

Q5KHN9              	100.00%		H3HE68              	100.00%
Bootstrap support for Q5KHN9 as seed ortholog is 100%.
Bootstrap support for H3HE68 as seed ortholog is 100%.

Group of orthologs #305. Best score 445 bits
Score difference with first non-orthologous sequence - C.neoformans:445 P.ramorum:445

Q5KAH4              	100.00%		H3GK74              	100.00%
Bootstrap support for Q5KAH4 as seed ortholog is 100%.
Bootstrap support for H3GK74 as seed ortholog is 100%.

Group of orthologs #306. Best score 445 bits
Score difference with first non-orthologous sequence - C.neoformans:445 P.ramorum:445

Q5KPL5              	100.00%		H3G9Z0              	100.00%
Bootstrap support for Q5KPL5 as seed ortholog is 100%.
Bootstrap support for H3G9Z0 as seed ortholog is 100%.

Group of orthologs #307. Best score 445 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:36

Q5KAU0              	100.00%		H3H1Y7              	100.00%
Bootstrap support for Q5KAU0 as seed ortholog is 99%.
Bootstrap support for H3H1Y7 as seed ortholog is 77%.

Group of orthologs #308. Best score 444 bits
Score difference with first non-orthologous sequence - C.neoformans:444 P.ramorum:444

Q5K9R3              	100.00%		H3G9Q8              	100.00%
Bootstrap support for Q5K9R3 as seed ortholog is 100%.
Bootstrap support for H3G9Q8 as seed ortholog is 100%.

Group of orthologs #309. Best score 444 bits
Score difference with first non-orthologous sequence - C.neoformans:444 P.ramorum:444

Q5KK60              	100.00%		H3G9K2              	100.00%
Bootstrap support for Q5KK60 as seed ortholog is 100%.
Bootstrap support for H3G9K2 as seed ortholog is 100%.

Group of orthologs #310. Best score 443 bits
Score difference with first non-orthologous sequence - C.neoformans:443 P.ramorum:376

Q5KE74              	100.00%		H3G9Z7              	100.00%
                    	       		H3G9Z8              	96.05%
Bootstrap support for Q5KE74 as seed ortholog is 100%.
Bootstrap support for H3G9Z7 as seed ortholog is 100%.

Group of orthologs #311. Best score 443 bits
Score difference with first non-orthologous sequence - C.neoformans:443 P.ramorum:345

Q5KJN4              	100.00%		H3GHE4              	100.00%
Bootstrap support for Q5KJN4 as seed ortholog is 100%.
Bootstrap support for H3GHE4 as seed ortholog is 100%.

Group of orthologs #312. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.ramorum:124

Q5KFJ4              	100.00%		H3G5C7              	100.00%
Bootstrap support for Q5KFJ4 as seed ortholog is 100%.
Bootstrap support for H3G5C7 as seed ortholog is 99%.

Group of orthologs #313. Best score 442 bits
Score difference with first non-orthologous sequence - C.neoformans:442 P.ramorum:442

Q5KFC3              	100.00%		H3GNK8              	100.00%
Bootstrap support for Q5KFC3 as seed ortholog is 100%.
Bootstrap support for H3GNK8 as seed ortholog is 100%.

Group of orthologs #314. Best score 441 bits
Score difference with first non-orthologous sequence - C.neoformans:441 P.ramorum:155

Q5KH19              	100.00%		H3GA09              	100.00%
                    	       		H3GA84              	8.14%
Bootstrap support for Q5KH19 as seed ortholog is 100%.
Bootstrap support for H3GA09 as seed ortholog is 99%.

Group of orthologs #315. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.ramorum:393

P0CS36              	100.00%		H3G6T4              	100.00%
                    	       		H3GQ77              	46.50%
Bootstrap support for P0CS36 as seed ortholog is 100%.
Bootstrap support for H3G6T4 as seed ortholog is 100%.

Group of orthologs #316. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.ramorum:440

P0CQ34              	100.00%		H3GV61              	100.00%
                    	       		H3G7E1              	55.70%
Bootstrap support for P0CQ34 as seed ortholog is 100%.
Bootstrap support for H3GV61 as seed ortholog is 100%.

Group of orthologs #317. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.ramorum:440

P0CO20              	100.00%		H3GA81              	100.00%
Bootstrap support for P0CO20 as seed ortholog is 100%.
Bootstrap support for H3GA81 as seed ortholog is 100%.

Group of orthologs #318. Best score 440 bits
Score difference with first non-orthologous sequence - C.neoformans:440 P.ramorum:440

Q5KII9              	100.00%		H3GA10              	100.00%
Bootstrap support for Q5KII9 as seed ortholog is 100%.
Bootstrap support for H3GA10 as seed ortholog is 100%.

Group of orthologs #319. Best score 439 bits
Score difference with first non-orthologous sequence - C.neoformans:439 P.ramorum:347

Q5K9P3              	100.00%		H3GQ42              	100.00%
                    	       		H3H294              	56.94%
                    	       		H3H967              	56.65%
                    	       		H3H292              	56.07%
                    	       		H3H293              	42.63%
Bootstrap support for Q5K9P3 as seed ortholog is 100%.
Bootstrap support for H3GQ42 as seed ortholog is 100%.

Group of orthologs #320. Best score 438 bits
Score difference with first non-orthologous sequence - C.neoformans:438 P.ramorum:186

Q5KC30              	100.00%		H3GA44              	100.00%
Bootstrap support for Q5KC30 as seed ortholog is 100%.
Bootstrap support for H3GA44 as seed ortholog is 100%.

Group of orthologs #321. Best score 438 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.ramorum:438

Q5KDD7              	100.00%		H3GAK0              	100.00%
Bootstrap support for Q5KDD7 as seed ortholog is 100%.
Bootstrap support for H3GAK0 as seed ortholog is 100%.

Group of orthologs #322. Best score 437 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:437

Q5K9A9              	100.00%		H3G8X8              	100.00%
                    	       		H3G5F5              	93.23%
                    	       		H3G7K6              	72.93%
Bootstrap support for Q5K9A9 as seed ortholog is 88%.
Bootstrap support for H3G8X8 as seed ortholog is 100%.

Group of orthologs #323. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.ramorum:436

Q5K8F7              	100.00%		H3GAM7              	100.00%
Bootstrap support for Q5K8F7 as seed ortholog is 100%.
Bootstrap support for H3GAM7 as seed ortholog is 100%.

Group of orthologs #324. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.ramorum:436

Q5KJ46              	100.00%		H3GAC0              	100.00%
Bootstrap support for Q5KJ46 as seed ortholog is 100%.
Bootstrap support for H3GAC0 as seed ortholog is 100%.

Group of orthologs #325. Best score 436 bits
Score difference with first non-orthologous sequence - C.neoformans:436 P.ramorum:436

Q5KC95              	100.00%		H3H3G9              	100.00%
Bootstrap support for Q5KC95 as seed ortholog is 100%.
Bootstrap support for H3H3G9 as seed ortholog is 100%.

Group of orthologs #326. Best score 434 bits
Score difference with first non-orthologous sequence - C.neoformans:434 P.ramorum:434

Q5KL04              	100.00%		H3GBZ0              	100.00%
Bootstrap support for Q5KL04 as seed ortholog is 100%.
Bootstrap support for H3GBZ0 as seed ortholog is 100%.

Group of orthologs #327. Best score 433 bits
Score difference with first non-orthologous sequence - C.neoformans:433 P.ramorum:262

Q5KP01              	100.00%		H3G9X7              	100.00%
Bootstrap support for Q5KP01 as seed ortholog is 100%.
Bootstrap support for H3G9X7 as seed ortholog is 100%.

Group of orthologs #328. Best score 432 bits
Score difference with first non-orthologous sequence - C.neoformans:432 P.ramorum:298

Q5KHQ8              	100.00%		H3G7L4              	100.00%
Bootstrap support for Q5KHQ8 as seed ortholog is 100%.
Bootstrap support for H3G7L4 as seed ortholog is 100%.

Group of orthologs #329. Best score 430 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.ramorum:181

Q5KII1              	100.00%		H3G4Y9              	100.00%
Bootstrap support for Q5KII1 as seed ortholog is 100%.
Bootstrap support for H3G4Y9 as seed ortholog is 99%.

Group of orthologs #330. Best score 429 bits
Score difference with first non-orthologous sequence - C.neoformans:429 P.ramorum:429

Q5KA00              	100.00%		H3G947              	100.00%
Bootstrap support for Q5KA00 as seed ortholog is 100%.
Bootstrap support for H3G947 as seed ortholog is 100%.

Group of orthologs #331. Best score 428 bits
Score difference with first non-orthologous sequence - C.neoformans:428 P.ramorum:428

Q5KMS7              	100.00%		H3GLS3              	100.00%
Bootstrap support for Q5KMS7 as seed ortholog is 100%.
Bootstrap support for H3GLS3 as seed ortholog is 100%.

Group of orthologs #332. Best score 427 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.ramorum:427

Q5K7P9              	100.00%		H3GAC1              	100.00%
Bootstrap support for Q5K7P9 as seed ortholog is 100%.
Bootstrap support for H3GAC1 as seed ortholog is 100%.

Group of orthologs #333. Best score 427 bits
Score difference with first non-orthologous sequence - C.neoformans:427 P.ramorum:170

Q5KMF5              	100.00%		H3G8V8              	100.00%
Bootstrap support for Q5KMF5 as seed ortholog is 100%.
Bootstrap support for H3G8V8 as seed ortholog is 100%.

Group of orthologs #334. Best score 426 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:70

Q5KHS2              	100.00%		H3G9N8              	100.00%
Bootstrap support for Q5KHS2 as seed ortholog is 99%.
Bootstrap support for H3G9N8 as seed ortholog is 98%.

Group of orthologs #335. Best score 426 bits
Score difference with first non-orthologous sequence - C.neoformans:426 P.ramorum:426

Q5KIA5              	100.00%		H3HCS0              	100.00%
Bootstrap support for Q5KIA5 as seed ortholog is 100%.
Bootstrap support for H3HCS0 as seed ortholog is 100%.

Group of orthologs #336. Best score 425 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.ramorum:229

Q5KMR8              	100.00%		H3G7T0              	100.00%
Bootstrap support for Q5KMR8 as seed ortholog is 100%.
Bootstrap support for H3G7T0 as seed ortholog is 100%.

Group of orthologs #337. Best score 425 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.ramorum:93

Q5KKJ5              	100.00%		H3GAY8              	100.00%
Bootstrap support for Q5KKJ5 as seed ortholog is 96%.
Bootstrap support for H3GAY8 as seed ortholog is 99%.

Group of orthologs #338. Best score 424 bits
Score difference with first non-orthologous sequence - C.neoformans:424 P.ramorum:424

Q5KHS3              	100.00%		H3G8W8              	100.00%
Bootstrap support for Q5KHS3 as seed ortholog is 100%.
Bootstrap support for H3G8W8 as seed ortholog is 100%.

Group of orthologs #339. Best score 424 bits
Score difference with first non-orthologous sequence - C.neoformans:424 P.ramorum:424

Q5KD08              	100.00%		H3GQ19              	100.00%
Bootstrap support for Q5KD08 as seed ortholog is 100%.
Bootstrap support for H3GQ19 as seed ortholog is 100%.

Group of orthologs #340. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.ramorum:423

Q5K8E2              	100.00%		H3G9J5              	100.00%
                    	       		H3G9E1              	65.40%
                    	       		H3G6P1              	47.55%
Bootstrap support for Q5K8E2 as seed ortholog is 71%.
Alternative seed ortholog is Q5K917 (25 bits away from this cluster)
Bootstrap support for H3G9J5 as seed ortholog is 100%.

Group of orthologs #341. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:423 P.ramorum:423

Q5KLU5              	100.00%		H3G8D0              	100.00%
Bootstrap support for Q5KLU5 as seed ortholog is 100%.
Bootstrap support for H3G8D0 as seed ortholog is 100%.

Group of orthologs #342. Best score 423 bits
Score difference with first non-orthologous sequence - C.neoformans:423 P.ramorum:198

Q5KHB5              	100.00%		H3H2J8              	100.00%
Bootstrap support for Q5KHB5 as seed ortholog is 100%.
Bootstrap support for H3H2J8 as seed ortholog is 100%.

Group of orthologs #343. Best score 422 bits
Score difference with first non-orthologous sequence - C.neoformans:422 P.ramorum:422

P0CQ14              	100.00%		H3G886              	100.00%
Bootstrap support for P0CQ14 as seed ortholog is 100%.
Bootstrap support for H3G886 as seed ortholog is 100%.

Group of orthologs #344. Best score 422 bits
Score difference with first non-orthologous sequence - C.neoformans:422 P.ramorum:48

Q5K9L0              	100.00%		H3H3X5              	100.00%
Bootstrap support for Q5K9L0 as seed ortholog is 100%.
Bootstrap support for H3H3X5 as seed ortholog is 88%.

Group of orthologs #345. Best score 421 bits
Score difference with first non-orthologous sequence - C.neoformans:421 P.ramorum:305

Q5KEQ4              	100.00%		H3G9B3              	100.00%
Bootstrap support for Q5KEQ4 as seed ortholog is 100%.
Bootstrap support for H3G9B3 as seed ortholog is 100%.

Group of orthologs #346. Best score 421 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:290

P0CS48              	100.00%		H3HBV5              	100.00%
Bootstrap support for P0CS48 as seed ortholog is 100%.
Bootstrap support for H3HBV5 as seed ortholog is 100%.

Group of orthologs #347. Best score 420 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:181

Q5KK79              	100.00%		H3G9R3              	100.00%
Bootstrap support for Q5KK79 as seed ortholog is 100%.
Bootstrap support for H3G9R3 as seed ortholog is 99%.

Group of orthologs #348. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.ramorum:79

Q5KMG1              	100.00%		H3G6Z5              	100.00%
Q5K8R8              	19.75%		
Bootstrap support for Q5KMG1 as seed ortholog is 100%.
Bootstrap support for H3G6Z5 as seed ortholog is 97%.

Group of orthologs #349. Best score 419 bits
Score difference with first non-orthologous sequence - C.neoformans:419 P.ramorum:419

Q5KCY4              	100.00%		H3G8E2              	100.00%
Bootstrap support for Q5KCY4 as seed ortholog is 100%.
Bootstrap support for H3G8E2 as seed ortholog is 100%.

Group of orthologs #350. Best score 418 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:73

Q5KDK0              	100.00%		H3GWC2              	100.00%
Bootstrap support for Q5KDK0 as seed ortholog is 100%.
Bootstrap support for H3GWC2 as seed ortholog is 93%.

Group of orthologs #351. Best score 416 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.ramorum:257

Q5KHS6              	100.00%		H3G5D1              	100.00%
Bootstrap support for Q5KHS6 as seed ortholog is 100%.
Bootstrap support for H3G5D1 as seed ortholog is 100%.

Group of orthologs #352. Best score 416 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:119

Q5KLZ4              	100.00%		H3G9M8              	100.00%
Bootstrap support for Q5KLZ4 as seed ortholog is 99%.
Bootstrap support for H3G9M8 as seed ortholog is 99%.

Group of orthologs #353. Best score 415 bits
Score difference with first non-orthologous sequence - C.neoformans:415 P.ramorum:415

Q5KHJ8              	100.00%		H3HCQ5              	100.00%
Bootstrap support for Q5KHJ8 as seed ortholog is 100%.
Bootstrap support for H3HCQ5 as seed ortholog is 100%.

Group of orthologs #354. Best score 414 bits
Score difference with first non-orthologous sequence - C.neoformans:414 P.ramorum:414

Q5KLB8              	100.00%		H3H1D0              	100.00%
Q5K6V8              	17.35%		
Q5KDW9              	14.87%		
Q5KGL0              	10.80%		
Bootstrap support for Q5KLB8 as seed ortholog is 100%.
Bootstrap support for H3H1D0 as seed ortholog is 100%.

Group of orthologs #355. Best score 414 bits
Score difference with first non-orthologous sequence - C.neoformans:414 P.ramorum:414

Q5K972              	100.00%		H3H563              	100.00%
Bootstrap support for Q5K972 as seed ortholog is 100%.
Bootstrap support for H3H563 as seed ortholog is 100%.

Group of orthologs #356. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:316

Q5KNC3              	100.00%		H3GER8              	100.00%
Bootstrap support for Q5KNC3 as seed ortholog is 99%.
Bootstrap support for H3GER8 as seed ortholog is 100%.

Group of orthologs #357. Best score 413 bits
Score difference with first non-orthologous sequence - C.neoformans:413 P.ramorum:413

Q5KDR1              	100.00%		H3GQR2              	100.00%
Bootstrap support for Q5KDR1 as seed ortholog is 100%.
Bootstrap support for H3GQR2 as seed ortholog is 100%.

Group of orthologs #358. Best score 412 bits
Score difference with first non-orthologous sequence - C.neoformans:412 P.ramorum:73

Q5KGS9              	100.00%		H3H542              	100.00%
                    	       		H3H433              	40.87%
                    	       		H3GZW0              	26.82%
                    	       		H3HA38              	5.54%
Bootstrap support for Q5KGS9 as seed ortholog is 100%.
Bootstrap support for H3H542 as seed ortholog is 79%.

Group of orthologs #359. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.ramorum:155

Q5KK08              	100.00%		H3GBZ2              	100.00%
Q5KBZ2              	10.83%		H3G4Y2              	90.76%
Bootstrap support for Q5KK08 as seed ortholog is 100%.
Bootstrap support for H3GBZ2 as seed ortholog is 100%.

Group of orthologs #360. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:410 P.ramorum:410

Q5K9Z1              	100.00%		H3HAP6              	100.00%
                    	       		H3G4X5              	65.36%
Bootstrap support for Q5K9Z1 as seed ortholog is 100%.
Bootstrap support for H3HAP6 as seed ortholog is 100%.

Group of orthologs #361. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:410 P.ramorum:410

Q5KDZ3              	100.00%		H3GUK7              	100.00%
Bootstrap support for Q5KDZ3 as seed ortholog is 100%.
Bootstrap support for H3GUK7 as seed ortholog is 100%.

Group of orthologs #362. Best score 410 bits
Score difference with first non-orthologous sequence - C.neoformans:410 P.ramorum:410

Q5KML3              	100.00%		H3H4C8              	100.00%
Bootstrap support for Q5KML3 as seed ortholog is 100%.
Bootstrap support for H3H4C8 as seed ortholog is 100%.

Group of orthologs #363. Best score 409 bits
Score difference with first non-orthologous sequence - C.neoformans:409 P.ramorum:409

Q5KAU7              	100.00%		H3HAI9              	100.00%
                    	       		H3GKE7              	99.69%
Bootstrap support for Q5KAU7 as seed ortholog is 100%.
Bootstrap support for H3HAI9 as seed ortholog is 100%.

Group of orthologs #364. Best score 409 bits
Score difference with first non-orthologous sequence - C.neoformans:409 P.ramorum:409

Q5KID7              	100.00%		H3GSD4              	100.00%
Bootstrap support for Q5KID7 as seed ortholog is 100%.
Bootstrap support for H3GSD4 as seed ortholog is 100%.

Group of orthologs #365. Best score 408 bits
Score difference with first non-orthologous sequence - C.neoformans:408 P.ramorum:408

Q5KPN7              	100.00%		H3G9L0              	100.00%
Bootstrap support for Q5KPN7 as seed ortholog is 100%.
Bootstrap support for H3G9L0 as seed ortholog is 100%.

Group of orthologs #366. Best score 407 bits
Score difference with first non-orthologous sequence - C.neoformans:407 P.ramorum:407

Q5KAF2              	100.00%		H3G6Y2              	100.00%
Bootstrap support for Q5KAF2 as seed ortholog is 100%.
Bootstrap support for H3G6Y2 as seed ortholog is 100%.

Group of orthologs #367. Best score 407 bits
Score difference with first non-orthologous sequence - C.neoformans:407 P.ramorum:407

Q5KHN4              	100.00%		H3GQ20              	100.00%
Bootstrap support for Q5KHN4 as seed ortholog is 100%.
Bootstrap support for H3GQ20 as seed ortholog is 100%.

Group of orthologs #368. Best score 406 bits
Score difference with first non-orthologous sequence - C.neoformans:406 P.ramorum:281

Q5KI86              	100.00%		H3G9J9              	100.00%
Bootstrap support for Q5KI86 as seed ortholog is 100%.
Bootstrap support for H3G9J9 as seed ortholog is 100%.

Group of orthologs #369. Best score 406 bits
Score difference with first non-orthologous sequence - C.neoformans:406 P.ramorum:406

Q5KKE9              	100.00%		H3H0X1              	100.00%
Bootstrap support for Q5KKE9 as seed ortholog is 100%.
Bootstrap support for H3H0X1 as seed ortholog is 100%.

Group of orthologs #370. Best score 404 bits
Score difference with first non-orthologous sequence - C.neoformans:404 P.ramorum:404

P0CM24              	100.00%		H3G8W6              	100.00%
Bootstrap support for P0CM24 as seed ortholog is 100%.
Bootstrap support for H3G8W6 as seed ortholog is 100%.

Group of orthologs #371. Best score 404 bits
Score difference with first non-orthologous sequence - C.neoformans:404 P.ramorum:404

Q5K8I1              	100.00%		H3G928              	100.00%
Bootstrap support for Q5K8I1 as seed ortholog is 100%.
Bootstrap support for H3G928 as seed ortholog is 100%.

Group of orthologs #372. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:403 P.ramorum:403

Q5KDT3              	100.00%		H3G8V7              	100.00%
                    	       		H3G5G8              	54.78%
Bootstrap support for Q5KDT3 as seed ortholog is 100%.
Bootstrap support for H3G8V7 as seed ortholog is 100%.

Group of orthologs #373. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:403 P.ramorum:403

Q5KDX5              	100.00%		H3G8B8              	100.00%
Bootstrap support for Q5KDX5 as seed ortholog is 100%.
Bootstrap support for H3G8B8 as seed ortholog is 100%.

Group of orthologs #374. Best score 403 bits
Score difference with first non-orthologous sequence - C.neoformans:403 P.ramorum:178

Q5KJY4              	100.00%		H3G8X2              	100.00%
Bootstrap support for Q5KJY4 as seed ortholog is 100%.
Bootstrap support for H3G8X2 as seed ortholog is 100%.

Group of orthologs #375. Best score 402 bits
Score difference with first non-orthologous sequence - C.neoformans:402 P.ramorum:252

Q5KAT1              	100.00%		H3HCL6              	100.00%
Q5KAU3              	65.87%		H3GJZ0              	5.37%
Bootstrap support for Q5KAT1 as seed ortholog is 100%.
Bootstrap support for H3HCL6 as seed ortholog is 99%.

Group of orthologs #376. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:93

Q5KMR6              	100.00%		H3GZU5              	100.00%
                    	       		H3H6G7              	84.49%
Bootstrap support for Q5KMR6 as seed ortholog is 99%.
Bootstrap support for H3GZU5 as seed ortholog is 99%.

Group of orthologs #377. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.ramorum:401

Q5KKT4              	100.00%		H3H3V4              	100.00%
                    	       		H3GK03              	17.62%
Bootstrap support for Q5KKT4 as seed ortholog is 82%.
Bootstrap support for H3H3V4 as seed ortholog is 100%.

Group of orthologs #378. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:401 P.ramorum:401

Q5KJI6              	100.00%		H3G8G3              	100.00%
Bootstrap support for Q5KJI6 as seed ortholog is 100%.
Bootstrap support for H3G8G3 as seed ortholog is 100%.

Group of orthologs #379. Best score 401 bits
Score difference with first non-orthologous sequence - C.neoformans:401 P.ramorum:401

Q5KK29              	100.00%		H3GAH7              	100.00%
Bootstrap support for Q5KK29 as seed ortholog is 100%.
Bootstrap support for H3GAH7 as seed ortholog is 100%.

Group of orthologs #380. Best score 399 bits
Score difference with first non-orthologous sequence - C.neoformans:399 P.ramorum:399

Q5KKL2              	100.00%		H3H7H5              	100.00%
Q5KG05              	50.63%		
Bootstrap support for Q5KKL2 as seed ortholog is 100%.
Bootstrap support for H3H7H5 as seed ortholog is 100%.

Group of orthologs #381. Best score 399 bits
Score difference with first non-orthologous sequence - C.neoformans:399 P.ramorum:399

P0CN28              	100.00%		H3G6D2              	100.00%
Bootstrap support for P0CN28 as seed ortholog is 100%.
Bootstrap support for H3G6D2 as seed ortholog is 100%.

Group of orthologs #382. Best score 399 bits
Score difference with first non-orthologous sequence - C.neoformans:399 P.ramorum:201

Q5KLS2              	100.00%		H3G5K2              	100.00%
Bootstrap support for Q5KLS2 as seed ortholog is 100%.
Bootstrap support for H3G5K2 as seed ortholog is 100%.

Group of orthologs #383. Best score 399 bits
Score difference with first non-orthologous sequence - C.neoformans:399 P.ramorum:314

Q5KQ06              	100.00%		H3GZB3              	100.00%
Bootstrap support for Q5KQ06 as seed ortholog is 100%.
Bootstrap support for H3GZB3 as seed ortholog is 100%.

Group of orthologs #384. Best score 398 bits
Score difference with first non-orthologous sequence - C.neoformans:24 P.ramorum:398

Q5KHW1              	100.00%		H3G8E3              	100.00%
                    	       		H3GAC6              	100.00%
                    	       		H3G761              	11.30%
Bootstrap support for Q5KHW1 as seed ortholog is 74%.
Alternative seed ortholog is Q5K879 (24 bits away from this cluster)
Bootstrap support for H3G8E3 as seed ortholog is 100%.
Bootstrap support for H3GAC6 as seed ortholog is 100%.

Group of orthologs #385. Best score 398 bits
Score difference with first non-orthologous sequence - C.neoformans:398 P.ramorum:247

Q5KJC6              	100.00%		H3G8F6              	100.00%
                    	       		H3GED8              	63.23%
Bootstrap support for Q5KJC6 as seed ortholog is 100%.
Bootstrap support for H3G8F6 as seed ortholog is 99%.

Group of orthologs #386. Best score 398 bits
Score difference with first non-orthologous sequence - C.neoformans:398 P.ramorum:398

Q5KFR0              	100.00%		H3GVK0              	100.00%
Bootstrap support for Q5KFR0 as seed ortholog is 100%.
Bootstrap support for H3GVK0 as seed ortholog is 100%.

Group of orthologs #387. Best score 396 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.ramorum:396

Q5KKG9              	100.00%		H3G7F3              	100.00%
Bootstrap support for Q5KKG9 as seed ortholog is 100%.
Bootstrap support for H3G7F3 as seed ortholog is 100%.

Group of orthologs #388. Best score 396 bits
Score difference with first non-orthologous sequence - C.neoformans:396 P.ramorum:103

Q5KEJ4              	100.00%		H3GPX7              	100.00%
Bootstrap support for Q5KEJ4 as seed ortholog is 100%.
Bootstrap support for H3GPX7 as seed ortholog is 97%.

Group of orthologs #389. Best score 395 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.ramorum:187

P0CQ78              	100.00%		H3G5S8              	100.00%
Bootstrap support for P0CQ78 as seed ortholog is 100%.
Bootstrap support for H3G5S8 as seed ortholog is 99%.

Group of orthologs #390. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.ramorum:394

Q5KEW6              	100.00%		H3GAG0              	100.00%
Bootstrap support for Q5KEW6 as seed ortholog is 100%.
Bootstrap support for H3GAG0 as seed ortholog is 100%.

Group of orthologs #391. Best score 394 bits
Score difference with first non-orthologous sequence - C.neoformans:394 P.ramorum:394

Q5KF83              	100.00%		H3GM71              	100.00%
Bootstrap support for Q5KF83 as seed ortholog is 100%.
Bootstrap support for H3GM71 as seed ortholog is 100%.

Group of orthologs #392. Best score 393 bits
Score difference with first non-orthologous sequence - C.neoformans:393 P.ramorum:393

Q5K843              	100.00%		H3G7T9              	100.00%
Bootstrap support for Q5K843 as seed ortholog is 100%.
Bootstrap support for H3G7T9 as seed ortholog is 100%.

Group of orthologs #393. Best score 392 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.ramorum:392

Q5K758              	100.00%		H3GFN8              	100.00%
Bootstrap support for Q5K758 as seed ortholog is 68%.
Alternative seed ortholog is Q5KEY3 (21 bits away from this cluster)
Bootstrap support for H3GFN8 as seed ortholog is 100%.

Group of orthologs #394. Best score 392 bits
Score difference with first non-orthologous sequence - C.neoformans:392 P.ramorum:392

Q5KDH3              	100.00%		H3GWL4              	100.00%
Bootstrap support for Q5KDH3 as seed ortholog is 100%.
Bootstrap support for H3GWL4 as seed ortholog is 100%.

Group of orthologs #395. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:171

Q5KDB7              	100.00%		H3G8W1              	100.00%
Bootstrap support for Q5KDB7 as seed ortholog is 94%.
Bootstrap support for H3G8W1 as seed ortholog is 99%.

Group of orthologs #396. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:389 P.ramorum:110

Q5KE89              	100.00%		H3GBC8              	100.00%
Bootstrap support for Q5KE89 as seed ortholog is 100%.
Bootstrap support for H3GBC8 as seed ortholog is 99%.

Group of orthologs #397. Best score 389 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.ramorum:265

Q5KLR7              	100.00%		H3GA03              	100.00%
Bootstrap support for Q5KLR7 as seed ortholog is 99%.
Bootstrap support for H3GA03 as seed ortholog is 100%.

Group of orthologs #398. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.ramorum:388

Q5KLF5              	100.00%		H3GLA6              	100.00%
Bootstrap support for Q5KLF5 as seed ortholog is 100%.
Bootstrap support for H3GLA6 as seed ortholog is 100%.

Group of orthologs #399. Best score 388 bits
Score difference with first non-orthologous sequence - C.neoformans:388 P.ramorum:314

Q5KL14              	100.00%		H3HCZ8              	100.00%
Bootstrap support for Q5KL14 as seed ortholog is 100%.
Bootstrap support for H3HCZ8 as seed ortholog is 100%.

Group of orthologs #400. Best score 387 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.ramorum:237

P0CR10              	100.00%		H3GBC9              	100.00%
Bootstrap support for P0CR10 as seed ortholog is 100%.
Bootstrap support for H3GBC9 as seed ortholog is 100%.

Group of orthologs #401. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.ramorum:109

Q5KEN3              	100.00%		H3GF94              	100.00%
                    	       		H3H076              	57.99%
Bootstrap support for Q5KEN3 as seed ortholog is 100%.
Bootstrap support for H3GF94 as seed ortholog is 98%.

Group of orthologs #402. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.ramorum:307

P0CS60              	100.00%		H3GAS1              	100.00%
Bootstrap support for P0CS60 as seed ortholog is 100%.
Bootstrap support for H3GAS1 as seed ortholog is 100%.

Group of orthologs #403. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:386

Q5KF13              	100.00%		H3G5N8              	100.00%
Bootstrap support for Q5KF13 as seed ortholog is 100%.
Bootstrap support for H3G5N8 as seed ortholog is 100%.

Group of orthologs #404. Best score 386 bits
Score difference with first non-orthologous sequence - C.neoformans:386 P.ramorum:386

Q5KE15              	100.00%		H3G957              	100.00%
Bootstrap support for Q5KE15 as seed ortholog is 100%.
Bootstrap support for H3G957 as seed ortholog is 100%.

Group of orthologs #405. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:384 P.ramorum:384

Q5KIH5              	100.00%		H3G8A9              	100.00%
Bootstrap support for Q5KIH5 as seed ortholog is 100%.
Bootstrap support for H3G8A9 as seed ortholog is 100%.

Group of orthologs #406. Best score 384 bits
Score difference with first non-orthologous sequence - C.neoformans:384 P.ramorum:384

Q5K9Q6              	100.00%		H3HDI3              	100.00%
Bootstrap support for Q5K9Q6 as seed ortholog is 100%.
Bootstrap support for H3HDI3 as seed ortholog is 100%.

Group of orthologs #407. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:383

Q5K761              	100.00%		H3G9V7              	100.00%
Bootstrap support for Q5K761 as seed ortholog is 99%.
Bootstrap support for H3G9V7 as seed ortholog is 100%.

Group of orthologs #408. Best score 383 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.ramorum:228

Q5KG30              	100.00%		H3G4X2              	100.00%
Bootstrap support for Q5KG30 as seed ortholog is 100%.
Bootstrap support for H3G4X2 as seed ortholog is 100%.

Group of orthologs #409. Best score 382 bits
Score difference with first non-orthologous sequence - C.neoformans:382 P.ramorum:382

P0CR56              	100.00%		H3G7Z2              	100.00%
Bootstrap support for P0CR56 as seed ortholog is 100%.
Bootstrap support for H3G7Z2 as seed ortholog is 100%.

Group of orthologs #410. Best score 382 bits
Score difference with first non-orthologous sequence - C.neoformans:382 P.ramorum:382

Q5KA97              	100.00%		H3G4Y5              	100.00%
Bootstrap support for Q5KA97 as seed ortholog is 100%.
Bootstrap support for H3G4Y5 as seed ortholog is 100%.

Group of orthologs #411. Best score 382 bits
Score difference with first non-orthologous sequence - C.neoformans:382 P.ramorum:382

Q5KKS5              	100.00%		H3GHW1              	100.00%
Bootstrap support for Q5KKS5 as seed ortholog is 100%.
Bootstrap support for H3GHW1 as seed ortholog is 100%.

Group of orthologs #412. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.ramorum:46

Q5KKV1              	100.00%		H3G8Q7              	100.00%
Bootstrap support for Q5KKV1 as seed ortholog is 91%.
Bootstrap support for H3G8Q7 as seed ortholog is 90%.

Group of orthologs #413. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:381 P.ramorum:285

Q5KN69              	100.00%		H3GA67              	100.00%
Bootstrap support for Q5KN69 as seed ortholog is 100%.
Bootstrap support for H3GA67 as seed ortholog is 100%.

Group of orthologs #414. Best score 381 bits
Score difference with first non-orthologous sequence - C.neoformans:381 P.ramorum:381

Q5KAB5              	100.00%		H3GVL6              	100.00%
Bootstrap support for Q5KAB5 as seed ortholog is 100%.
Bootstrap support for H3GVL6 as seed ortholog is 100%.

Group of orthologs #415. Best score 380 bits
Score difference with first non-orthologous sequence - C.neoformans:380 P.ramorum:21

Q5KKG6              	100.00%		H3GAP1              	100.00%
                    	       		H3GAQ6              	86.85%
                    	       		H3H2B2              	75.95%
                    	       		H3GAQ9              	75.61%
                    	       		H3H2B4              	75.61%
                    	       		H3G6W1              	19.03%
Bootstrap support for Q5KKG6 as seed ortholog is 100%.
Bootstrap support for H3GAP1 as seed ortholog is 69%.
Alternative seed ortholog is H3GAC9 (21 bits away from this cluster)

Group of orthologs #416. Best score 379 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.ramorum:216

P0CQ90              	100.00%		H3GG09              	100.00%
Bootstrap support for P0CQ90 as seed ortholog is 100%.
Bootstrap support for H3GG09 as seed ortholog is 99%.

Group of orthologs #417. Best score 378 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:209

P0CQ66              	100.00%		H3GRS2              	100.00%
Bootstrap support for P0CQ66 as seed ortholog is 99%.
Bootstrap support for H3GRS2 as seed ortholog is 100%.

Group of orthologs #418. Best score 377 bits
Score difference with first non-orthologous sequence - C.neoformans:377 P.ramorum:377

Q5KMM7              	100.00%		H3GWU6              	100.00%
Bootstrap support for Q5KMM7 as seed ortholog is 100%.
Bootstrap support for H3GWU6 as seed ortholog is 100%.

Group of orthologs #419. Best score 376 bits
Score difference with first non-orthologous sequence - C.neoformans:376 P.ramorum:376

Q5KKQ4              	100.00%		H3G6P3              	100.00%
Bootstrap support for Q5KKQ4 as seed ortholog is 100%.
Bootstrap support for H3G6P3 as seed ortholog is 100%.

Group of orthologs #420. Best score 376 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.ramorum:216

Q5KJE3              	100.00%		H3GA00              	100.00%
Bootstrap support for Q5KJE3 as seed ortholog is 99%.
Bootstrap support for H3GA00 as seed ortholog is 100%.

Group of orthologs #421. Best score 374 bits
Score difference with first non-orthologous sequence - C.neoformans:374 P.ramorum:374

Q5KBH1              	100.00%		H3GIG8              	100.00%
Bootstrap support for Q5KBH1 as seed ortholog is 100%.
Bootstrap support for H3GIG8 as seed ortholog is 100%.

Group of orthologs #422. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.ramorum:217

P0CQ86              	100.00%		H3G791              	100.00%
Bootstrap support for P0CQ86 as seed ortholog is 100%.
Bootstrap support for H3G791 as seed ortholog is 100%.

Group of orthologs #423. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.ramorum:373

Q5KHS1              	100.00%		H3GMC4              	100.00%
Bootstrap support for Q5KHS1 as seed ortholog is 100%.
Bootstrap support for H3GMC4 as seed ortholog is 100%.

Group of orthologs #424. Best score 373 bits
Score difference with first non-orthologous sequence - C.neoformans:373 P.ramorum:373

Q5KIN5              	100.00%		H3GPE0              	100.00%
Bootstrap support for Q5KIN5 as seed ortholog is 100%.
Bootstrap support for H3GPE0 as seed ortholog is 100%.

Group of orthologs #425. Best score 372 bits
Score difference with first non-orthologous sequence - C.neoformans:372 P.ramorum:218

Q5KNW6              	100.00%		H3GB46              	100.00%
Bootstrap support for Q5KNW6 as seed ortholog is 100%.
Bootstrap support for H3GB46 as seed ortholog is 100%.

Group of orthologs #426. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.ramorum:371

P0CO58              	100.00%		H3G9W9              	100.00%
Bootstrap support for P0CO58 as seed ortholog is 100%.
Bootstrap support for H3G9W9 as seed ortholog is 100%.

Group of orthologs #427. Best score 371 bits
Score difference with first non-orthologous sequence - C.neoformans:371 P.ramorum:371

P0CP36              	100.00%		H3GBN6              	100.00%
Bootstrap support for P0CP36 as seed ortholog is 100%.
Bootstrap support for H3GBN6 as seed ortholog is 100%.

Group of orthologs #428. Best score 367 bits
Score difference with first non-orthologous sequence - C.neoformans:367 P.ramorum:280

Q5KAM3              	100.00%		H3GQF9              	100.00%
Bootstrap support for Q5KAM3 as seed ortholog is 100%.
Bootstrap support for H3GQF9 as seed ortholog is 100%.

Group of orthologs #429. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.ramorum:287

Q5KEG5              	100.00%		H3H1V1              	100.00%
Q5KHA5              	46.72%		H3GAL4              	69.65%
                    	       		H3G6U0              	26.40%
Bootstrap support for Q5KEG5 as seed ortholog is 100%.
Bootstrap support for H3H1V1 as seed ortholog is 100%.

Group of orthologs #430. Best score 366 bits
Score difference with first non-orthologous sequence - C.neoformans:366 P.ramorum:366

Q5KH75              	100.00%		H3GJS1              	100.00%
Bootstrap support for Q5KH75 as seed ortholog is 100%.
Bootstrap support for H3GJS1 as seed ortholog is 100%.

Group of orthologs #431. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:364 P.ramorum:364

Q5K796              	100.00%		H3G8T3              	100.00%
Bootstrap support for Q5K796 as seed ortholog is 100%.
Bootstrap support for H3G8T3 as seed ortholog is 100%.

Group of orthologs #432. Best score 364 bits
Score difference with first non-orthologous sequence - C.neoformans:364 P.ramorum:364

Q5KMX3              	100.00%		H3G9T5              	100.00%
Bootstrap support for Q5KMX3 as seed ortholog is 100%.
Bootstrap support for H3G9T5 as seed ortholog is 100%.

Group of orthologs #433. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.ramorum:363

Q5K8Z3              	100.00%		H3G973              	100.00%
Bootstrap support for Q5K8Z3 as seed ortholog is 100%.
Bootstrap support for H3G973 as seed ortholog is 100%.

Group of orthologs #434. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.ramorum:363

Q5KHA6              	100.00%		H3G5W3              	100.00%
Bootstrap support for Q5KHA6 as seed ortholog is 100%.
Bootstrap support for H3G5W3 as seed ortholog is 100%.

Group of orthologs #435. Best score 363 bits
Score difference with first non-orthologous sequence - C.neoformans:363 P.ramorum:363

Q5KGA8              	100.00%		H3GKJ4              	100.00%
Bootstrap support for Q5KGA8 as seed ortholog is 100%.
Bootstrap support for H3GKJ4 as seed ortholog is 100%.

Group of orthologs #436. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.ramorum:362

Q5KHG2              	100.00%		H3GF02              	100.00%
                    	       		H3GF01              	22.60%
Bootstrap support for Q5KHG2 as seed ortholog is 100%.
Bootstrap support for H3GF02 as seed ortholog is 100%.

Group of orthologs #437. Best score 362 bits
Score difference with first non-orthologous sequence - C.neoformans:362 P.ramorum:245

Q5KNR0              	100.00%		H3GK30              	100.00%
Bootstrap support for Q5KNR0 as seed ortholog is 100%.
Bootstrap support for H3GK30 as seed ortholog is 100%.

Group of orthologs #438. Best score 361 bits
Score difference with first non-orthologous sequence - C.neoformans:361 P.ramorum:361

Q5KLK8              	100.00%		H3GS01              	100.00%
                    	       		H3GTN8              	100.00%
Bootstrap support for Q5KLK8 as seed ortholog is 100%.
Bootstrap support for H3GS01 as seed ortholog is 100%.
Bootstrap support for H3GTN8 as seed ortholog is 100%.

Group of orthologs #439. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:360 P.ramorum:210

Q5KPG1              	100.00%		H3H2B7              	100.00%
                    	       		H3GGN3              	99.64%
                    	       		H3GGN6              	54.18%
                    	       		H3H2C0              	43.73%
                    	       		H3GBG4              	41.36%
                    	       		H3H2B8              	35.18%
                    	       		H3H2B5              	32.82%
Bootstrap support for Q5KPG1 as seed ortholog is 100%.
Bootstrap support for H3H2B7 as seed ortholog is 99%.

Group of orthologs #440. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:360 P.ramorum:276

Q5KKZ9              	100.00%		H3G8Y5              	100.00%
Bootstrap support for Q5KKZ9 as seed ortholog is 100%.
Bootstrap support for H3G8Y5 as seed ortholog is 100%.

Group of orthologs #441. Best score 360 bits
Score difference with first non-orthologous sequence - C.neoformans:360 P.ramorum:79

Q5KJ97              	100.00%		H3HAP2              	100.00%
Bootstrap support for Q5KJ97 as seed ortholog is 100%.
Bootstrap support for H3HAP2 as seed ortholog is 83%.

Group of orthologs #442. Best score 359 bits
Score difference with first non-orthologous sequence - C.neoformans:359 P.ramorum:359

Q5KCC8              	100.00%		H3GBK8              	100.00%
Bootstrap support for Q5KCC8 as seed ortholog is 100%.
Bootstrap support for H3GBK8 as seed ortholog is 100%.

Group of orthologs #443. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.ramorum:89

Q5KHE5              	100.00%		H3GG23              	100.00%
P0CP66              	29.36%		B9VTN8              	14.31%
Bootstrap support for Q5KHE5 as seed ortholog is 54%.
Alternative seed ortholog is Q5KC34 (5 bits away from this cluster)
Bootstrap support for H3GG23 as seed ortholog is 99%.

Group of orthologs #444. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.ramorum:358

Q5K952              	100.00%		H3G883              	100.00%
Bootstrap support for Q5K952 as seed ortholog is 100%.
Bootstrap support for H3G883 as seed ortholog is 100%.

Group of orthologs #445. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.ramorum:358

Q5KDP4              	100.00%		H3G894              	100.00%
Bootstrap support for Q5KDP4 as seed ortholog is 100%.
Bootstrap support for H3G894 as seed ortholog is 100%.

Group of orthologs #446. Best score 358 bits
Score difference with first non-orthologous sequence - C.neoformans:358 P.ramorum:221

Q5KJV0              	100.00%		H3G8E1              	100.00%
Bootstrap support for Q5KJV0 as seed ortholog is 100%.
Bootstrap support for H3G8E1 as seed ortholog is 100%.

Group of orthologs #447. Best score 357 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:313

P0CO88              	100.00%		H3GAM5              	100.00%
Bootstrap support for P0CO88 as seed ortholog is 99%.
Bootstrap support for H3GAM5 as seed ortholog is 100%.

Group of orthologs #448. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.ramorum:356

Q5KFH8              	100.00%		H3G9X1              	100.00%
Bootstrap support for Q5KFH8 as seed ortholog is 100%.
Bootstrap support for H3G9X1 as seed ortholog is 100%.

Group of orthologs #449. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.ramorum:356

Q5K8S0              	100.00%		H3GNG9              	100.00%
Bootstrap support for Q5K8S0 as seed ortholog is 100%.
Bootstrap support for H3GNG9 as seed ortholog is 100%.

Group of orthologs #450. Best score 356 bits
Score difference with first non-orthologous sequence - C.neoformans:356 P.ramorum:356

Q5K9C7              	100.00%		H3GXX3              	100.00%
Bootstrap support for Q5K9C7 as seed ortholog is 100%.
Bootstrap support for H3GXX3 as seed ortholog is 100%.

Group of orthologs #451. Best score 355 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.ramorum:102

Q5KCX9              	100.00%		H3GCU1              	100.00%
Bootstrap support for Q5KCX9 as seed ortholog is 100%.
Bootstrap support for H3GCU1 as seed ortholog is 97%.

Group of orthologs #452. Best score 355 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.ramorum:355

P0CS12              	100.00%		H3GWN7              	100.00%
Bootstrap support for P0CS12 as seed ortholog is 100%.
Bootstrap support for H3GWN7 as seed ortholog is 100%.

Group of orthologs #453. Best score 355 bits
Score difference with first non-orthologous sequence - C.neoformans:355 P.ramorum:153

Q5KQ28              	100.00%		H3HAS3              	100.00%
Bootstrap support for Q5KQ28 as seed ortholog is 100%.
Bootstrap support for H3HAS3 as seed ortholog is 99%.

Group of orthologs #454. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.ramorum:108

Q5KLT3              	100.00%		H3G8L0              	100.00%
                    	       		H3G8K8              	80.05%
Bootstrap support for Q5KLT3 as seed ortholog is 99%.
Bootstrap support for H3G8L0 as seed ortholog is 99%.

Group of orthologs #455. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:284 P.ramorum:184

Q5KGF2              	100.00%		H3G6P7              	100.00%
Bootstrap support for Q5KGF2 as seed ortholog is 100%.
Bootstrap support for H3G6P7 as seed ortholog is 99%.

Group of orthologs #456. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:354 P.ramorum:147

Q5KIS9              	100.00%		H3GHW8              	100.00%
Bootstrap support for Q5KIS9 as seed ortholog is 100%.
Bootstrap support for H3GHW8 as seed ortholog is 99%.

Group of orthologs #457. Best score 354 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:97

Q5KQ95              	100.00%		H3GD15              	100.00%
Bootstrap support for Q5KQ95 as seed ortholog is 100%.
Bootstrap support for H3GD15 as seed ortholog is 97%.

Group of orthologs #458. Best score 353 bits
Score difference with first non-orthologous sequence - C.neoformans:353 P.ramorum:353

Q5KHZ2              	100.00%		H3G7E6              	100.00%
Bootstrap support for Q5KHZ2 as seed ortholog is 100%.
Bootstrap support for H3G7E6 as seed ortholog is 100%.

Group of orthologs #459. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:124

Q5KEJ1              	100.00%		H3H7S1              	100.00%
                    	       		H3H546              	36.03%
Bootstrap support for Q5KEJ1 as seed ortholog is 99%.
Bootstrap support for H3H7S1 as seed ortholog is 99%.

Group of orthologs #460. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.ramorum:256

Q5KN70              	100.00%		H3GB43              	100.00%
Bootstrap support for Q5KN70 as seed ortholog is 100%.
Bootstrap support for H3GB43 as seed ortholog is 100%.

Group of orthologs #461. Best score 352 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.ramorum:352

Q5KBY0              	100.00%		H3H038              	100.00%
Bootstrap support for Q5KBY0 as seed ortholog is 99%.
Bootstrap support for H3H038 as seed ortholog is 100%.

Group of orthologs #462. Best score 351 bits
Score difference with first non-orthologous sequence - C.neoformans:351 P.ramorum:351

Q5KMP3              	100.00%		H3G6Y6              	100.00%
Bootstrap support for Q5KMP3 as seed ortholog is 100%.
Bootstrap support for H3G6Y6 as seed ortholog is 100%.

Group of orthologs #463. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.ramorum:174

Q5KL60              	100.00%		H3GRN4              	100.00%
                    	       		H3GRK8              	47.08%
                    	       		H3GRK5              	32.24%
                    	       		H3G6L5              	27.53%
                    	       		H3GRL0              	27.02%
                    	       		H3G8A1              	23.34%
                    	       		H3G8Z4              	5.63%
Bootstrap support for Q5KL60 as seed ortholog is 74%.
Alternative seed ortholog is Q5KC09 (42 bits away from this cluster)
Bootstrap support for H3GRN4 as seed ortholog is 99%.

Group of orthologs #464. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:34 P.ramorum:350

Q5KCW8              	100.00%		H3GLM4              	100.00%
                    	       		H3GLM0              	50.76%
                    	       		H3GLM3              	40.23%
                    	       		H3GLN2              	29.82%
Bootstrap support for Q5KCW8 as seed ortholog is 72%.
Alternative seed ortholog is Q5KNL9 (34 bits away from this cluster)
Bootstrap support for H3GLM4 as seed ortholog is 100%.

Group of orthologs #465. Best score 350 bits
Score difference with first non-orthologous sequence - C.neoformans:350 P.ramorum:350

Q5KG83              	100.00%		H3HB70              	100.00%
Bootstrap support for Q5KG83 as seed ortholog is 100%.
Bootstrap support for H3HB70 as seed ortholog is 100%.

Group of orthologs #466. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.ramorum:112

Q5KNV3              	100.00%		H3G9Q7              	100.00%
Bootstrap support for Q5KNV3 as seed ortholog is 99%.
Bootstrap support for H3G9Q7 as seed ortholog is 98%.

Group of orthologs #467. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.ramorum:181

P0CR06              	100.00%		H3GSH8              	100.00%
Bootstrap support for P0CR06 as seed ortholog is 100%.
Bootstrap support for H3GSH8 as seed ortholog is 99%.

Group of orthologs #468. Best score 349 bits
Score difference with first non-orthologous sequence - C.neoformans:349 P.ramorum:349

Q5KJN5              	100.00%		H3H283              	100.00%
Bootstrap support for Q5KJN5 as seed ortholog is 100%.
Bootstrap support for H3H283 as seed ortholog is 100%.

Group of orthologs #469. Best score 348 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:287

Q5KAK7              	100.00%		H3G9E4              	100.00%
Q5KAK8              	58.27%		H3G4X1              	74.75%
Bootstrap support for Q5KAK7 as seed ortholog is 100%.
Bootstrap support for H3G9E4 as seed ortholog is 100%.

Group of orthologs #470. Best score 348 bits
Score difference with first non-orthologous sequence - C.neoformans:348 P.ramorum:348

Q5KB64              	100.00%		H3GAV2              	100.00%
Bootstrap support for Q5KB64 as seed ortholog is 100%.
Bootstrap support for H3GAV2 as seed ortholog is 100%.

Group of orthologs #471. Best score 347 bits
Score difference with first non-orthologous sequence - C.neoformans:347 P.ramorum:347

P0CQ60              	100.00%		H3G9L7              	100.00%
Bootstrap support for P0CQ60 as seed ortholog is 100%.
Bootstrap support for H3G9L7 as seed ortholog is 100%.

Group of orthologs #472. Best score 347 bits
Score difference with first non-orthologous sequence - C.neoformans:347 P.ramorum:347

Q5KAS7              	100.00%		H3G8Q6              	100.00%
Bootstrap support for Q5KAS7 as seed ortholog is 100%.
Bootstrap support for H3G8Q6 as seed ortholog is 100%.

Group of orthologs #473. Best score 347 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.ramorum:243

Q5K9D3              	100.00%		H3GIT1              	100.00%
Bootstrap support for Q5K9D3 as seed ortholog is 99%.
Bootstrap support for H3GIT1 as seed ortholog is 100%.

Group of orthologs #474. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.ramorum:346

Q5KEV1              	100.00%		H3G949              	100.00%
Bootstrap support for Q5KEV1 as seed ortholog is 100%.
Bootstrap support for H3G949 as seed ortholog is 100%.

Group of orthologs #475. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.ramorum:346

Q5KGR5              	100.00%		H3G9H1              	100.00%
Bootstrap support for Q5KGR5 as seed ortholog is 100%.
Bootstrap support for H3G9H1 as seed ortholog is 100%.

Group of orthologs #476. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.ramorum:346

Q5KDW3              	100.00%		H3GFQ5              	100.00%
Bootstrap support for Q5KDW3 as seed ortholog is 100%.
Bootstrap support for H3GFQ5 as seed ortholog is 100%.

Group of orthologs #477. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:346 P.ramorum:346

Q5KLQ5              	100.00%		H3GAJ2              	100.00%
Bootstrap support for Q5KLQ5 as seed ortholog is 100%.
Bootstrap support for H3GAJ2 as seed ortholog is 100%.

Group of orthologs #478. Best score 346 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.ramorum:71

Q5KCX1              	100.00%		H3GW83              	100.00%
Bootstrap support for Q5KCX1 as seed ortholog is 68%.
Alternative seed ortholog is P0CO18 (27 bits away from this cluster)
Bootstrap support for H3GW83 as seed ortholog is 89%.

Group of orthologs #479. Best score 345 bits
Score difference with first non-orthologous sequence - C.neoformans:345 P.ramorum:345

Q5K920              	100.00%		H3G979              	100.00%
                    	       		H3G6F1              	70.07%
Bootstrap support for Q5K920 as seed ortholog is 100%.
Bootstrap support for H3G979 as seed ortholog is 100%.

Group of orthologs #480. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.ramorum:344

Q5K8Z6              	100.00%		H3GAR2              	100.00%
Bootstrap support for Q5K8Z6 as seed ortholog is 100%.
Bootstrap support for H3GAR2 as seed ortholog is 100%.

Group of orthologs #481. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:344

Q5KDL9              	100.00%		H3GAF9              	100.00%
Bootstrap support for Q5KDL9 as seed ortholog is 86%.
Bootstrap support for H3GAF9 as seed ortholog is 100%.

Group of orthologs #482. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:344 P.ramorum:209

P0CS46              	100.00%		H3GU25              	100.00%
Bootstrap support for P0CS46 as seed ortholog is 100%.
Bootstrap support for H3GU25 as seed ortholog is 100%.

Group of orthologs #483. Best score 344 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.ramorum:275

Q5KJJ1              	100.00%		H3GIL8              	100.00%
Bootstrap support for Q5KJJ1 as seed ortholog is 100%.
Bootstrap support for H3GIL8 as seed ortholog is 100%.

Group of orthologs #484. Best score 343 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:157

Q5KG21              	100.00%		H3GJ91              	100.00%
                    	       		H3G5M5              	28.05%
Bootstrap support for Q5KG21 as seed ortholog is 96%.
Bootstrap support for H3GJ91 as seed ortholog is 99%.

Group of orthologs #485. Best score 343 bits
Score difference with first non-orthologous sequence - C.neoformans:343 P.ramorum:232

Q5KKX9              	100.00%		H3GV09              	100.00%
Bootstrap support for Q5KKX9 as seed ortholog is 100%.
Bootstrap support for H3GV09 as seed ortholog is 99%.

Group of orthologs #486. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:23

Q5KAN2              	100.00%		H3G9W4              	100.00%
                    	       		H3HDS7              	9.33%
Bootstrap support for Q5KAN2 as seed ortholog is 99%.
Bootstrap support for H3G9W4 as seed ortholog is 74%.
Alternative seed ortholog is H3GHB2 (23 bits away from this cluster)

Group of orthologs #487. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.ramorum:272

Q5KJV1              	100.00%		H3GAH8              	100.00%
                    	       		H3H0V9              	19.47%
Bootstrap support for Q5KJV1 as seed ortholog is 100%.
Bootstrap support for H3GAH8 as seed ortholog is 100%.

Group of orthologs #488. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:250 P.ramorum:223

Q5KDT4              	100.00%		H3G7Z1              	100.00%
Bootstrap support for Q5KDT4 as seed ortholog is 100%.
Bootstrap support for H3G7Z1 as seed ortholog is 100%.

Group of orthologs #489. Best score 342 bits
Score difference with first non-orthologous sequence - C.neoformans:342 P.ramorum:342

Q5KJG7              	100.00%		H3G565              	100.00%
Bootstrap support for Q5KJG7 as seed ortholog is 100%.
Bootstrap support for H3G565 as seed ortholog is 100%.

Group of orthologs #490. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:341 P.ramorum:341

Q5KDV3              	100.00%		H3G836              	100.00%
Q5KJX0              	76.84%		
Bootstrap support for Q5KDV3 as seed ortholog is 100%.
Bootstrap support for H3G836 as seed ortholog is 100%.

Group of orthologs #491. Best score 341 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:247

Q5KGN7              	100.00%		H3G7J3              	100.00%
Bootstrap support for Q5KGN7 as seed ortholog is 100%.
Bootstrap support for H3G7J3 as seed ortholog is 100%.

Group of orthologs #492. Best score 340 bits
Score difference with first non-orthologous sequence - C.neoformans:340 P.ramorum:340

Q5KNG6              	100.00%		H3G5C4              	100.00%
Bootstrap support for Q5KNG6 as seed ortholog is 100%.
Bootstrap support for H3G5C4 as seed ortholog is 100%.

Group of orthologs #493. Best score 338 bits
Score difference with first non-orthologous sequence - C.neoformans:338 P.ramorum:284

F5HFW5              	100.00%		H3G8I5              	100.00%
Bootstrap support for F5HFW5 as seed ortholog is 100%.
Bootstrap support for H3G8I5 as seed ortholog is 100%.

Group of orthologs #494. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.ramorum:336

Q5KJD3              	100.00%		H3G888              	100.00%
                    	       		H3GCH7              	68.78%
                    	       		H3GCH8              	31.70%
Bootstrap support for Q5KJD3 as seed ortholog is 100%.
Bootstrap support for H3G888 as seed ortholog is 100%.

Group of orthologs #495. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.ramorum:336

P0CP58              	100.00%		H3G5V8              	100.00%
Bootstrap support for P0CP58 as seed ortholog is 100%.
Bootstrap support for H3G5V8 as seed ortholog is 100%.

Group of orthologs #496. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.ramorum:336

Q5K7P2              	100.00%		H3GNU0              	100.00%
Bootstrap support for Q5K7P2 as seed ortholog is 100%.
Bootstrap support for H3GNU0 as seed ortholog is 100%.

Group of orthologs #497. Best score 336 bits
Score difference with first non-orthologous sequence - C.neoformans:336 P.ramorum:336

Q5K9N8              	100.00%		H3GWA8              	100.00%
Bootstrap support for Q5K9N8 as seed ortholog is 100%.
Bootstrap support for H3GWA8 as seed ortholog is 100%.

Group of orthologs #498. Best score 335 bits
Score difference with first non-orthologous sequence - C.neoformans:335 P.ramorum:335

P0CR16              	100.00%		H3GG11              	100.00%
Bootstrap support for P0CR16 as seed ortholog is 100%.
Bootstrap support for H3GG11 as seed ortholog is 100%.

Group of orthologs #499. Best score 334 bits
Score difference with first non-orthologous sequence - C.neoformans:334 P.ramorum:334

Q5KJ99              	100.00%		H3G6G9              	100.00%
Bootstrap support for Q5KJ99 as seed ortholog is 100%.
Bootstrap support for H3G6G9 as seed ortholog is 100%.

Group of orthologs #500. Best score 333 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:35

Q5KB65              	100.00%		H3GKU6              	100.00%
Bootstrap support for Q5KB65 as seed ortholog is 97%.
Bootstrap support for H3GKU6 as seed ortholog is 75%.

Group of orthologs #501. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 P.ramorum:245

Q5KPY7              	100.00%		H3GAJ0              	100.00%
Q5KKM8              	9.71%		
Bootstrap support for Q5KPY7 as seed ortholog is 100%.
Bootstrap support for H3GAJ0 as seed ortholog is 100%.

Group of orthologs #502. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:125

Q5KH03              	100.00%		H3GIZ0              	100.00%
Bootstrap support for Q5KH03 as seed ortholog is 99%.
Bootstrap support for H3GIZ0 as seed ortholog is 99%.

Group of orthologs #503. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 P.ramorum:332

Q5KH10              	100.00%		H3GLH5              	100.00%
Bootstrap support for Q5KH10 as seed ortholog is 100%.
Bootstrap support for H3GLH5 as seed ortholog is 100%.

Group of orthologs #504. Best score 332 bits
Score difference with first non-orthologous sequence - C.neoformans:332 P.ramorum:332

Q5KMA4              	100.00%		H3GJC3              	100.00%
Bootstrap support for Q5KMA4 as seed ortholog is 100%.
Bootstrap support for H3GJC3 as seed ortholog is 100%.

Group of orthologs #505. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.ramorum:331

P0CN18              	100.00%		H3G8K7              	100.00%
Bootstrap support for P0CN18 as seed ortholog is 100%.
Bootstrap support for H3G8K7 as seed ortholog is 100%.

Group of orthologs #506. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:99

Q5KI66              	100.00%		H3GAB6              	100.00%
Bootstrap support for Q5KI66 as seed ortholog is 100%.
Bootstrap support for H3GAB6 as seed ortholog is 99%.

Group of orthologs #507. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:205

Q5KHR9              	100.00%		H3GS79              	100.00%
Bootstrap support for Q5KHR9 as seed ortholog is 100%.
Bootstrap support for H3GS79 as seed ortholog is 99%.

Group of orthologs #508. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:274 P.ramorum:168

P0CS42              	100.00%		H3H2U3              	100.00%
Bootstrap support for P0CS42 as seed ortholog is 100%.
Bootstrap support for H3H2U3 as seed ortholog is 99%.

Group of orthologs #509. Best score 331 bits
Score difference with first non-orthologous sequence - C.neoformans:331 P.ramorum:331

Q5KIA2              	100.00%		H3GYJ5              	100.00%
Bootstrap support for Q5KIA2 as seed ortholog is 100%.
Bootstrap support for H3GYJ5 as seed ortholog is 100%.

Group of orthologs #510. Best score 330 bits
Score difference with first non-orthologous sequence - C.neoformans:330 P.ramorum:330

Q5KC51              	100.00%		H3GA62              	100.00%
Bootstrap support for Q5KC51 as seed ortholog is 100%.
Bootstrap support for H3GA62 as seed ortholog is 100%.

Group of orthologs #511. Best score 329 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.ramorum:194

Q5KJI7              	100.00%		H3GDM7              	100.00%
Bootstrap support for Q5KJI7 as seed ortholog is 100%.
Bootstrap support for H3GDM7 as seed ortholog is 99%.

Group of orthologs #512. Best score 329 bits
Score difference with first non-orthologous sequence - C.neoformans:329 P.ramorum:329

Q5KPW7              	100.00%		H3GH31              	100.00%
Bootstrap support for Q5KPW7 as seed ortholog is 100%.
Bootstrap support for H3GH31 as seed ortholog is 100%.

Group of orthologs #513. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.ramorum:328

Q5KQ48              	100.00%		H3HC28              	100.00%
                    	       		H3GLI1              	63.35%
Bootstrap support for Q5KQ48 as seed ortholog is 100%.
Bootstrap support for H3HC28 as seed ortholog is 100%.

Group of orthologs #514. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.ramorum:328

Q5KK78              	100.00%		H3G8T1              	100.00%
Bootstrap support for Q5KK78 as seed ortholog is 100%.
Bootstrap support for H3G8T1 as seed ortholog is 100%.

Group of orthologs #515. Best score 328 bits
Score difference with first non-orthologous sequence - C.neoformans:328 P.ramorum:328

Q5KIJ9              	100.00%		H3GCB9              	100.00%
Bootstrap support for Q5KIJ9 as seed ortholog is 100%.
Bootstrap support for H3GCB9 as seed ortholog is 100%.

Group of orthologs #516. Best score 327 bits
Score difference with first non-orthologous sequence - C.neoformans:327 P.ramorum:327

Q5KES4              	100.00%		H3G8Y4              	100.00%
Bootstrap support for Q5KES4 as seed ortholog is 100%.
Bootstrap support for H3G8Y4 as seed ortholog is 100%.

Group of orthologs #517. Best score 326 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.ramorum:149

Q5KNK5              	100.00%		H3G9B2              	100.00%
                    	       		H3GAI2              	46.37%
Bootstrap support for Q5KNK5 as seed ortholog is 99%.
Bootstrap support for H3G9B2 as seed ortholog is 99%.

Group of orthologs #518. Best score 326 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:176

P0CQ94              	100.00%		H3GMA5              	100.00%
Bootstrap support for P0CQ94 as seed ortholog is 99%.
Bootstrap support for H3GMA5 as seed ortholog is 99%.

Group of orthologs #519. Best score 325 bits
Score difference with first non-orthologous sequence - C.neoformans:325 P.ramorum:325

Q5K8P5              	100.00%		H3HB33              	100.00%
Bootstrap support for Q5K8P5 as seed ortholog is 100%.
Bootstrap support for H3HB33 as seed ortholog is 100%.

Group of orthologs #520. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

P0CR04              	100.00%		H3G669              	100.00%
Bootstrap support for P0CR04 as seed ortholog is 99%.
Bootstrap support for H3G669 as seed ortholog is 99%.

Group of orthologs #521. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:324 P.ramorum:324

Q5KP83              	100.00%		H3G856              	100.00%
Bootstrap support for Q5KP83 as seed ortholog is 100%.
Bootstrap support for H3G856 as seed ortholog is 100%.

Group of orthologs #522. Best score 324 bits
Score difference with first non-orthologous sequence - C.neoformans:324 P.ramorum:324

Q5KMS5              	100.00%		H3GYB8              	100.00%
Bootstrap support for Q5KMS5 as seed ortholog is 100%.
Bootstrap support for H3GYB8 as seed ortholog is 100%.

Group of orthologs #523. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:52

Q5KBC8              	100.00%		H3G992              	100.00%
Q5KP84              	100.00%		
Bootstrap support for Q5KBC8 as seed ortholog is 99%.
Bootstrap support for Q5KP84 as seed ortholog is 99%.
Bootstrap support for H3G992 as seed ortholog is 91%.

Group of orthologs #524. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.ramorum:322

Q5KGV7              	100.00%		H3GNQ3              	100.00%
Bootstrap support for Q5KGV7 as seed ortholog is 100%.
Bootstrap support for H3GNQ3 as seed ortholog is 100%.

Group of orthologs #525. Best score 322 bits
Score difference with first non-orthologous sequence - C.neoformans:322 P.ramorum:165

Q5K9Z4              	100.00%		H3HD81              	100.00%
Bootstrap support for Q5K9Z4 as seed ortholog is 100%.
Bootstrap support for H3HD81 as seed ortholog is 99%.

Group of orthologs #526. Best score 321 bits
Score difference with first non-orthologous sequence - C.neoformans:321 P.ramorum:249

Q5KJY8              	100.00%		H3G760              	100.00%
Bootstrap support for Q5KJY8 as seed ortholog is 100%.
Bootstrap support for H3G760 as seed ortholog is 100%.

Group of orthologs #527. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:320

Q5KN13              	100.00%		H3G900              	100.00%
                    	       		H3G902              	80.23%
                    	       		H3GJX8              	74.50%
                    	       		H3G901              	13.75%
                    	       		H3G6I2              	9.46%
Bootstrap support for Q5KN13 as seed ortholog is 100%.
Bootstrap support for H3G900 as seed ortholog is 100%.

Group of orthologs #528. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.ramorum:320

Q5KD79              	100.00%		H3GXW5              	100.00%
                    	       		H3GXX2              	11.40%
Bootstrap support for Q5KD79 as seed ortholog is 100%.
Bootstrap support for H3GXW5 as seed ortholog is 100%.

Group of orthologs #529. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.ramorum:320

Q5KFT4              	100.00%		H3G7D8              	100.00%
Bootstrap support for Q5KFT4 as seed ortholog is 100%.
Bootstrap support for H3G7D8 as seed ortholog is 100%.

Group of orthologs #530. Best score 320 bits
Score difference with first non-orthologous sequence - C.neoformans:320 P.ramorum:320

Q5KBP8              	100.00%		H3GDK0              	100.00%
Bootstrap support for Q5KBP8 as seed ortholog is 100%.
Bootstrap support for H3GDK0 as seed ortholog is 100%.

Group of orthologs #531. Best score 319 bits
Score difference with first non-orthologous sequence - C.neoformans:319 P.ramorum:319

P0CN86              	100.00%		H3G9T7              	100.00%
Bootstrap support for P0CN86 as seed ortholog is 100%.
Bootstrap support for H3G9T7 as seed ortholog is 100%.

Group of orthologs #532. Best score 319 bits
Score difference with first non-orthologous sequence - C.neoformans:319 P.ramorum:319

P0CN46              	100.00%		H3GBM0              	100.00%
Bootstrap support for P0CN46 as seed ortholog is 100%.
Bootstrap support for H3GBM0 as seed ortholog is 100%.

Group of orthologs #533. Best score 319 bits
Score difference with first non-orthologous sequence - C.neoformans:319 P.ramorum:185

Q5KNA1              	100.00%		H3GT37              	100.00%
Bootstrap support for Q5KNA1 as seed ortholog is 100%.
Bootstrap support for H3GT37 as seed ortholog is 100%.

Group of orthologs #534. Best score 318 bits
Score difference with first non-orthologous sequence - C.neoformans:318 P.ramorum:141

P0CQ18              	100.00%		H3HCI0              	100.00%
P0CQ20              	51.63%		
Bootstrap support for P0CQ18 as seed ortholog is 100%.
Bootstrap support for H3HCI0 as seed ortholog is 99%.

Group of orthologs #535. Best score 318 bits
Score difference with first non-orthologous sequence - C.neoformans:318 P.ramorum:47

Q5KEG3              	100.00%		H3GXK9              	100.00%
Bootstrap support for Q5KEG3 as seed ortholog is 100%.
Bootstrap support for H3GXK9 as seed ortholog is 79%.

Group of orthologs #536. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.ramorum:270

Q5KI80              	100.00%		H3HDW5              	100.00%
                    	       		H3G8N3              	15.01%
Bootstrap support for Q5KI80 as seed ortholog is 99%.
Bootstrap support for H3HDW5 as seed ortholog is 100%.

Group of orthologs #537. Best score 317 bits
Score difference with first non-orthologous sequence - C.neoformans:317 P.ramorum:317

Q5KH66              	100.00%		H3G884              	100.00%
Bootstrap support for Q5KH66 as seed ortholog is 100%.
Bootstrap support for H3G884 as seed ortholog is 100%.

Group of orthologs #538. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.ramorum:148

Q5KQ09              	100.00%		H3G7Y1              	100.00%
Q5KA14              	10.94%		H3HDZ1              	60.55%
Q5KCH2              	10.44%		H3G7Y2              	58.82%
Q5KJA6              	10.19%		
Q5KJA2              	9.81%		
Q5KCB5              	9.43%		
Q5KD25              	8.81%		
Q5KDS2              	7.42%		
Bootstrap support for Q5KQ09 as seed ortholog is 99%.
Bootstrap support for H3G7Y1 as seed ortholog is 99%.

Group of orthologs #539. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.ramorum:316

Q5KQ04              	100.00%		H3G8R9              	100.00%
Bootstrap support for Q5KQ04 as seed ortholog is 100%.
Bootstrap support for H3G8R9 as seed ortholog is 100%.

Group of orthologs #540. Best score 316 bits
Score difference with first non-orthologous sequence - C.neoformans:316 P.ramorum:316

P0CN44              	100.00%		H3HC45              	100.00%
Bootstrap support for P0CN44 as seed ortholog is 100%.
Bootstrap support for H3HC45 as seed ortholog is 100%.

Group of orthologs #541. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:315 P.ramorum:315

P0CQ58              	100.00%		H3G898              	100.00%
Bootstrap support for P0CQ58 as seed ortholog is 100%.
Bootstrap support for H3G898 as seed ortholog is 100%.

Group of orthologs #542. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:315 P.ramorum:315

P0CR72              	100.00%		H3GCM4              	100.00%
Bootstrap support for P0CR72 as seed ortholog is 100%.
Bootstrap support for H3GCM4 as seed ortholog is 100%.

Group of orthologs #543. Best score 315 bits
Score difference with first non-orthologous sequence - C.neoformans:315 P.ramorum:270

Q5KJ58              	100.00%		H3GMD2              	100.00%
Bootstrap support for Q5KJ58 as seed ortholog is 100%.
Bootstrap support for H3GMD2 as seed ortholog is 100%.

Group of orthologs #544. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.ramorum:47

Q5KM82              	100.00%		H3H2B1              	100.00%
                    	       		H3GYW9              	8.95%
                    	       		H3GM47              	7.39%
                    	       		H3GDY3              	5.70%
Bootstrap support for Q5KM82 as seed ortholog is 100%.
Bootstrap support for H3H2B1 as seed ortholog is 66%.
Alternative seed ortholog is H3GTK8 (47 bits away from this cluster)

Group of orthologs #545. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.ramorum:314

Q5KFJ6              	100.00%		H3G6G3              	100.00%
                    	       		H3G7P1              	15.99%
Bootstrap support for Q5KFJ6 as seed ortholog is 100%.
Bootstrap support for H3G6G3 as seed ortholog is 100%.

Group of orthologs #546. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.ramorum:162

Q5KAX6              	100.00%		H3G9Y7              	100.00%
Bootstrap support for Q5KAX6 as seed ortholog is 100%.
Bootstrap support for H3G9Y7 as seed ortholog is 100%.

Group of orthologs #547. Best score 314 bits
Score difference with first non-orthologous sequence - C.neoformans:314 P.ramorum:314

Q5KMT6              	100.00%		H3GQY6              	100.00%
Bootstrap support for Q5KMT6 as seed ortholog is 100%.
Bootstrap support for H3GQY6 as seed ortholog is 100%.

Group of orthologs #548. Best score 313 bits
Score difference with first non-orthologous sequence - C.neoformans:313 P.ramorum:313

Q5KFS1              	100.00%		H3G5Z6              	100.00%
Bootstrap support for Q5KFS1 as seed ortholog is 100%.
Bootstrap support for H3G5Z6 as seed ortholog is 100%.

Group of orthologs #549. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:104

P0CM16              	100.00%		H3G8L3              	100.00%
                    	       		H3G8L2              	96.55%
Bootstrap support for P0CM16 as seed ortholog is 99%.
Bootstrap support for H3G8L3 as seed ortholog is 100%.

Group of orthologs #550. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.ramorum:312

Q5KF87              	100.00%		H3GBX6              	100.00%
Bootstrap support for Q5KF87 as seed ortholog is 100%.
Bootstrap support for H3GBX6 as seed ortholog is 100%.

Group of orthologs #551. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.ramorum:312

Q5KIM3              	100.00%		H3G9C6              	100.00%
Bootstrap support for Q5KIM3 as seed ortholog is 100%.
Bootstrap support for H3G9C6 as seed ortholog is 100%.

Group of orthologs #552. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.ramorum:312

Q5KJU2              	100.00%		H3G8C3              	100.00%
Bootstrap support for Q5KJU2 as seed ortholog is 100%.
Bootstrap support for H3G8C3 as seed ortholog is 100%.

Group of orthologs #553. Best score 312 bits
Score difference with first non-orthologous sequence - C.neoformans:312 P.ramorum:312

Q5KM38              	100.00%		H3GN45              	100.00%
Bootstrap support for Q5KM38 as seed ortholog is 100%.
Bootstrap support for H3GN45 as seed ortholog is 100%.

Group of orthologs #554. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.ramorum:222

Q5KAZ7              	100.00%		H3GL68              	100.00%
                    	       		H3G782              	5.96%
Bootstrap support for Q5KAZ7 as seed ortholog is 100%.
Bootstrap support for H3GL68 as seed ortholog is 100%.

Group of orthologs #555. Best score 311 bits
Score difference with first non-orthologous sequence - C.neoformans:311 P.ramorum:311

Q5KA36              	100.00%		H3H2J7              	100.00%
Bootstrap support for Q5KA36 as seed ortholog is 100%.
Bootstrap support for H3H2J7 as seed ortholog is 100%.

Group of orthologs #556. Best score 310 bits
Score difference with first non-orthologous sequence - C.neoformans:310 P.ramorum:310

Q5K9V4              	100.00%		H3G7L3              	100.00%
Bootstrap support for Q5K9V4 as seed ortholog is 100%.
Bootstrap support for H3G7L3 as seed ortholog is 100%.

Group of orthologs #557. Best score 310 bits
Score difference with first non-orthologous sequence - C.neoformans:310 P.ramorum:310

Q5KHY1              	100.00%		H3H0W7              	100.00%
Bootstrap support for Q5KHY1 as seed ortholog is 100%.
Bootstrap support for H3H0W7 as seed ortholog is 100%.

Group of orthologs #558. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.ramorum:309

Q5KH76              	100.00%		H3GIT6              	100.00%
                    	       		H3GIT7              	51.18%
Bootstrap support for Q5KH76 as seed ortholog is 100%.
Bootstrap support for H3GIT6 as seed ortholog is 100%.

Group of orthologs #559. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.ramorum:309

P0CP88              	100.00%		H3G7W7              	100.00%
Bootstrap support for P0CP88 as seed ortholog is 100%.
Bootstrap support for H3G7W7 as seed ortholog is 100%.

Group of orthologs #560. Best score 309 bits
Score difference with first non-orthologous sequence - C.neoformans:309 P.ramorum:173

Q5KIY3              	100.00%		H3G950              	100.00%
Bootstrap support for Q5KIY3 as seed ortholog is 100%.
Bootstrap support for H3G950 as seed ortholog is 99%.

Group of orthologs #561. Best score 308 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:194

Q5KNM0              	100.00%		H3H5P9              	100.00%
                    	       		H3H820              	32.68%
Bootstrap support for Q5KNM0 as seed ortholog is 99%.
Bootstrap support for H3H5P9 as seed ortholog is 100%.

Group of orthologs #562. Best score 308 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.ramorum:200

Q5KMV5              	100.00%		H3G8W7              	100.00%
Bootstrap support for Q5KMV5 as seed ortholog is 100%.
Bootstrap support for H3G8W7 as seed ortholog is 100%.

Group of orthologs #563. Best score 308 bits
Score difference with first non-orthologous sequence - C.neoformans:308 P.ramorum:308

Q5KP39              	100.00%		H3H4A6              	100.00%
Bootstrap support for Q5KP39 as seed ortholog is 100%.
Bootstrap support for H3H4A6 as seed ortholog is 100%.

Group of orthologs #564. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:307

Q5KB78              	100.00%		H3G8Q1              	100.00%
                    	       		H3G8Q2              	76.68%
                    	       		H3G9N4              	27.98%
                    	       		H3GBA6              	27.46%
                    	       		H3GCX4              	26.68%
                    	       		H3G8A2              	26.17%
                    	       		H3G6L6              	25.91%
                    	       		H3G6L8              	25.39%
                    	       		H3G6S3              	24.87%
                    	       		H3G6U7              	23.58%
                    	       		H3GA92              	23.32%
                    	       		H3G6L9              	23.06%
                    	       		H3GA91              	23.06%
                    	       		H3GCW9              	22.80%
                    	       		H3GCX6              	21.24%
                    	       		H3G9S3              	20.98%
                    	       		H3GA93              	18.13%
                    	       		H3GCW8              	16.32%
                    	       		H3GYJ8              	16.06%
                    	       		H3GCX7              	14.51%
                    	       		H3G864              	13.99%
Bootstrap support for Q5KB78 as seed ortholog is 99%.
Bootstrap support for H3G8Q1 as seed ortholog is 100%.

Group of orthologs #565. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.ramorum:132

Q5KAY9              	100.00%		H3G853              	100.00%
Q5KQ59              	69.31%		
Bootstrap support for Q5KAY9 as seed ortholog is 100%.
Bootstrap support for H3G853 as seed ortholog is 90%.

Group of orthologs #566. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.ramorum:307

Q5KFQ7              	100.00%		H3G9H9              	100.00%
Bootstrap support for Q5KFQ7 as seed ortholog is 100%.
Bootstrap support for H3G9H9 as seed ortholog is 100%.

Group of orthologs #567. Best score 307 bits
Score difference with first non-orthologous sequence - C.neoformans:307 P.ramorum:307

Q5KIJ3              	100.00%		H3G9L1              	100.00%
Bootstrap support for Q5KIJ3 as seed ortholog is 100%.
Bootstrap support for H3G9L1 as seed ortholog is 100%.

Group of orthologs #568. Best score 306 bits
Score difference with first non-orthologous sequence - C.neoformans:306 P.ramorum:209

Q5K8J3              	100.00%		H3GDW1              	100.00%
Bootstrap support for Q5K8J3 as seed ortholog is 100%.
Bootstrap support for H3GDW1 as seed ortholog is 100%.

Group of orthologs #569. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:84

Q5K6Z2              	100.00%		H3G9Y3              	100.00%
Bootstrap support for Q5K6Z2 as seed ortholog is 99%.
Bootstrap support for H3G9Y3 as seed ortholog is 99%.

Group of orthologs #570. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.ramorum:305

Q5K9B8              	100.00%		H3GSZ7              	100.00%
Bootstrap support for Q5K9B8 as seed ortholog is 100%.
Bootstrap support for H3GSZ7 as seed ortholog is 100%.

Group of orthologs #571. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:305

Q5KBD0              	100.00%		H3GR83              	100.00%
Bootstrap support for Q5KBD0 as seed ortholog is 100%.
Bootstrap support for H3GR83 as seed ortholog is 100%.

Group of orthologs #572. Best score 305 bits
Score difference with first non-orthologous sequence - C.neoformans:305 P.ramorum:305

P0CR86              	100.00%		H3GWU1              	100.00%
Bootstrap support for P0CR86 as seed ortholog is 100%.
Bootstrap support for H3GWU1 as seed ortholog is 100%.

Group of orthologs #573. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.ramorum:231

P0CS32              	100.00%		H3GAG1              	100.00%
Bootstrap support for P0CS32 as seed ortholog is 100%.
Bootstrap support for H3GAG1 as seed ortholog is 100%.

Group of orthologs #574. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.ramorum:303

Q5KPH3              	100.00%		H3GG49              	100.00%
Bootstrap support for Q5KPH3 as seed ortholog is 100%.
Bootstrap support for H3GG49 as seed ortholog is 100%.

Group of orthologs #575. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.ramorum:303

Q5KNQ1              	100.00%		H3GQQ7              	100.00%
Bootstrap support for Q5KNQ1 as seed ortholog is 100%.
Bootstrap support for H3GQQ7 as seed ortholog is 100%.

Group of orthologs #576. Best score 303 bits
Score difference with first non-orthologous sequence - C.neoformans:303 P.ramorum:234

Q5KKT0              	100.00%		H3HED0              	100.00%
Bootstrap support for Q5KKT0 as seed ortholog is 100%.
Bootstrap support for H3HED0 as seed ortholog is 100%.

Group of orthologs #577. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.ramorum:302

Q5KCE8              	100.00%		H3G5M2              	100.00%
Bootstrap support for Q5KCE8 as seed ortholog is 100%.
Bootstrap support for H3G5M2 as seed ortholog is 100%.

Group of orthologs #578. Best score 302 bits
Score difference with first non-orthologous sequence - C.neoformans:302 P.ramorum:302

Q5K749              	100.00%		H3GXW6              	100.00%
Bootstrap support for Q5K749 as seed ortholog is 100%.
Bootstrap support for H3GXW6 as seed ortholog is 100%.

Group of orthologs #579. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.ramorum:301

Q5KC64              	100.00%		H3G912              	100.00%
Bootstrap support for Q5KC64 as seed ortholog is 100%.
Bootstrap support for H3G912 as seed ortholog is 100%.

Group of orthologs #580. Best score 301 bits
Score difference with first non-orthologous sequence - C.neoformans:301 P.ramorum:301

Q5KHK1              	100.00%		H3H1H3              	100.00%
Bootstrap support for Q5KHK1 as seed ortholog is 100%.
Bootstrap support for H3H1H3 as seed ortholog is 100%.

Group of orthologs #581. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.ramorum:248

Q5KPM5              	100.00%		H3GCZ5              	100.00%
Q5KAF6              	100.00%		H3G6M1              	100.00%
                    	       		H3GCY7              	83.41%
                    	       		H3GCZ6              	78.23%
                    	       		H3GCZ7              	65.17%
Bootstrap support for Q5KPM5 as seed ortholog is 100%.
Bootstrap support for Q5KAF6 as seed ortholog is 100%.
Bootstrap support for H3GCZ5 as seed ortholog is 100%.
Bootstrap support for H3G6M1 as seed ortholog is 100%.

Group of orthologs #582. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:57

Q5K8I9              	100.00%		H3G8X5              	100.00%
Bootstrap support for Q5K8I9 as seed ortholog is 100%.
Bootstrap support for H3G8X5 as seed ortholog is 99%.

Group of orthologs #583. Best score 300 bits
Score difference with first non-orthologous sequence - C.neoformans:300 P.ramorum:300

Q5KM94              	100.00%		H3G934              	100.00%
Bootstrap support for Q5KM94 as seed ortholog is 100%.
Bootstrap support for H3G934 as seed ortholog is 100%.

Group of orthologs #584. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.ramorum:299

P0CR70              	100.00%		H3GCB7              	100.00%
Bootstrap support for P0CR70 as seed ortholog is 100%.
Bootstrap support for H3GCB7 as seed ortholog is 100%.

Group of orthologs #585. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.ramorum:299

Q5KQ43              	100.00%		H3G9X4              	100.00%
Bootstrap support for Q5KQ43 as seed ortholog is 100%.
Bootstrap support for H3G9X4 as seed ortholog is 100%.

Group of orthologs #586. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.ramorum:299

Q5KQ20              	100.00%		H3GLH2              	100.00%
Bootstrap support for Q5KQ20 as seed ortholog is 100%.
Bootstrap support for H3GLH2 as seed ortholog is 100%.

Group of orthologs #587. Best score 299 bits
Score difference with first non-orthologous sequence - C.neoformans:299 P.ramorum:152

Q5KKQ9              	100.00%		H3GWA6              	100.00%
Bootstrap support for Q5KKQ9 as seed ortholog is 100%.
Bootstrap support for H3GWA6 as seed ortholog is 99%.

Group of orthologs #588. Best score 298 bits
Score difference with first non-orthologous sequence - C.neoformans:298 P.ramorum:298

Q5KIV1              	100.00%		H3GBZ7              	100.00%
Bootstrap support for Q5KIV1 as seed ortholog is 100%.
Bootstrap support for H3GBZ7 as seed ortholog is 100%.

Group of orthologs #589. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.ramorum:297

P0CN42              	100.00%		H3GEW8              	100.00%
Bootstrap support for P0CN42 as seed ortholog is 100%.
Bootstrap support for H3GEW8 as seed ortholog is 100%.

Group of orthologs #590. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.ramorum:252

Q5KHT1              	100.00%		H3H1I2              	100.00%
Bootstrap support for Q5KHT1 as seed ortholog is 100%.
Bootstrap support for H3H1I2 as seed ortholog is 100%.

Group of orthologs #591. Best score 297 bits
Score difference with first non-orthologous sequence - C.neoformans:297 P.ramorum:297

Q5K8W1              	100.00%		H3HD31              	100.00%
Bootstrap support for Q5K8W1 as seed ortholog is 100%.
Bootstrap support for H3HD31 as seed ortholog is 100%.

Group of orthologs #592. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:296

Q5KMY7              	100.00%		H3G4X8              	100.00%
Bootstrap support for Q5KMY7 as seed ortholog is 100%.
Bootstrap support for H3G4X8 as seed ortholog is 100%.

Group of orthologs #593. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:296

Q5KL05              	100.00%		H3G9I5              	100.00%
Bootstrap support for Q5KL05 as seed ortholog is 100%.
Bootstrap support for H3G9I5 as seed ortholog is 100%.

Group of orthologs #594. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:296

Q5KKU8              	100.00%		H3G9S6              	100.00%
Bootstrap support for Q5KKU8 as seed ortholog is 100%.
Bootstrap support for H3G9S6 as seed ortholog is 100%.

Group of orthologs #595. Best score 296 bits
Score difference with first non-orthologous sequence - C.neoformans:296 P.ramorum:296

Q5KAQ7              	100.00%		H3H115              	100.00%
Bootstrap support for Q5KAQ7 as seed ortholog is 100%.
Bootstrap support for H3H115 as seed ortholog is 100%.

Group of orthologs #596. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.ramorum:295

Q5KID8              	100.00%		H3GCA4              	100.00%
Bootstrap support for Q5KID8 as seed ortholog is 100%.
Bootstrap support for H3GCA4 as seed ortholog is 100%.

Group of orthologs #597. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.ramorum:47

Q5KNU1              	100.00%		H3GHC6              	100.00%
Bootstrap support for Q5KNU1 as seed ortholog is 100%.
Bootstrap support for H3GHC6 as seed ortholog is 88%.

Group of orthologs #598. Best score 295 bits
Score difference with first non-orthologous sequence - C.neoformans:295 P.ramorum:295

P0CN60              	100.00%		H3HBC2              	100.00%
Bootstrap support for P0CN60 as seed ortholog is 100%.
Bootstrap support for H3HBC2 as seed ortholog is 100%.

Group of orthologs #599. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.ramorum:294

Q5K8T6              	100.00%		H3GB12              	100.00%
                    	       		H3G596              	83.74%
Bootstrap support for Q5K8T6 as seed ortholog is 100%.
Bootstrap support for H3GB12 as seed ortholog is 100%.

Group of orthologs #600. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.ramorum:210

Q5KCN2              	100.00%		H3G9C7              	100.00%
Bootstrap support for Q5KCN2 as seed ortholog is 100%.
Bootstrap support for H3G9C7 as seed ortholog is 100%.

Group of orthologs #601. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.ramorum:294

Q5KK71              	100.00%		H3G6R7              	100.00%
Bootstrap support for Q5KK71 as seed ortholog is 100%.
Bootstrap support for H3G6R7 as seed ortholog is 100%.

Group of orthologs #602. Best score 294 bits
Score difference with first non-orthologous sequence - C.neoformans:294 P.ramorum:294

Q5K7I8              	100.00%		H3GWM1              	100.00%
Bootstrap support for Q5K7I8 as seed ortholog is 100%.
Bootstrap support for H3GWM1 as seed ortholog is 100%.

Group of orthologs #603. Best score 293 bits
Score difference with first non-orthologous sequence - C.neoformans:293 P.ramorum:293

Q5KC89              	100.00%		H3G9I2              	100.00%
Bootstrap support for Q5KC89 as seed ortholog is 100%.
Bootstrap support for H3G9I2 as seed ortholog is 100%.

Group of orthologs #604. Best score 293 bits
Score difference with first non-orthologous sequence - C.neoformans:293 P.ramorum:293

Q5KC90              	100.00%		H3GTK3              	100.00%
Bootstrap support for Q5KC90 as seed ortholog is 100%.
Bootstrap support for H3GTK3 as seed ortholog is 100%.

Group of orthologs #605. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:233

Q5K772              	100.00%		H3G7P3              	100.00%
Bootstrap support for Q5K772 as seed ortholog is 100%.
Bootstrap support for H3G7P3 as seed ortholog is 100%.

Group of orthologs #606. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:131

Q5K9W3              	100.00%		H3G936              	100.00%
Bootstrap support for Q5K9W3 as seed ortholog is 100%.
Bootstrap support for H3G936 as seed ortholog is 100%.

Group of orthologs #607. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KEZ5              	100.00%		H3G7F6              	100.00%
Bootstrap support for Q5KEZ5 as seed ortholog is 100%.
Bootstrap support for H3G7F6 as seed ortholog is 100%.

Group of orthologs #608. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KEJ6              	100.00%		H3G993              	100.00%
Bootstrap support for Q5KEJ6 as seed ortholog is 100%.
Bootstrap support for H3G993 as seed ortholog is 100%.

Group of orthologs #609. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KI91              	100.00%		H3G854              	100.00%
Bootstrap support for Q5KI91 as seed ortholog is 100%.
Bootstrap support for H3G854 as seed ortholog is 100%.

Group of orthologs #610. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KLE9              	100.00%		H3G8Y1              	100.00%
Bootstrap support for Q5KLE9 as seed ortholog is 100%.
Bootstrap support for H3G8Y1 as seed ortholog is 100%.

Group of orthologs #611. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KQ80              	100.00%		H3GA20              	100.00%
Bootstrap support for Q5KQ80 as seed ortholog is 100%.
Bootstrap support for H3GA20 as seed ortholog is 100%.

Group of orthologs #612. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:292 P.ramorum:292

Q5KKK5              	100.00%		H3GM85              	100.00%
Bootstrap support for Q5KKK5 as seed ortholog is 100%.
Bootstrap support for H3GM85 as seed ortholog is 100%.

Group of orthologs #613. Best score 292 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:47

Q5K8T9              	100.00%		H3GZT4              	100.00%
Bootstrap support for Q5K8T9 as seed ortholog is 54%.
Alternative seed ortholog is Q5KPK6 (50 bits away from this cluster)
Bootstrap support for H3GZT4 as seed ortholog is 76%.

Group of orthologs #614. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.ramorum:231

Q5KD50              	100.00%		H3GEE0              	100.00%
Bootstrap support for Q5KD50 as seed ortholog is 100%.
Bootstrap support for H3GEE0 as seed ortholog is 100%.

Group of orthologs #615. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.ramorum:291

Q5KJU9              	100.00%		H3G890              	100.00%
Bootstrap support for Q5KJU9 as seed ortholog is 99%.
Bootstrap support for H3G890 as seed ortholog is 100%.

Group of orthologs #616. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:291 P.ramorum:291

Q5KH85              	100.00%		H3GGW8              	100.00%
Bootstrap support for Q5KH85 as seed ortholog is 100%.
Bootstrap support for H3GGW8 as seed ortholog is 100%.

Group of orthologs #617. Best score 291 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.ramorum:230

Q5KKF0              	100.00%		H3GUR3              	100.00%
Bootstrap support for Q5KKF0 as seed ortholog is 99%.
Bootstrap support for H3GUR3 as seed ortholog is 100%.

Group of orthologs #618. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:289

Q5KK57              	100.00%		H3G972              	100.00%
Q5KN19              	10.84%		
Bootstrap support for Q5KK57 as seed ortholog is 100%.
Bootstrap support for H3G972 as seed ortholog is 100%.

Group of orthologs #619. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:289

Q5K8C0              	100.00%		H3G8K5              	100.00%
Bootstrap support for Q5K8C0 as seed ortholog is 100%.
Bootstrap support for H3G8K5 as seed ortholog is 100%.

Group of orthologs #620. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:289

Q5KGP1              	100.00%		H3G8I1              	100.00%
Bootstrap support for Q5KGP1 as seed ortholog is 100%.
Bootstrap support for H3G8I1 as seed ortholog is 100%.

Group of orthologs #621. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.ramorum:289

Q5KIR0              	100.00%		H3GAJ1              	100.00%
Bootstrap support for Q5KIR0 as seed ortholog is 95%.
Bootstrap support for H3GAJ1 as seed ortholog is 100%.

Group of orthologs #622. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.ramorum:95

P0CS28              	100.00%		H3GM26              	100.00%
Bootstrap support for P0CS28 as seed ortholog is 100%.
Bootstrap support for H3GM26 as seed ortholog is 98%.

Group of orthologs #623. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:168

Q5KD75              	100.00%		H3HEA9              	100.00%
Bootstrap support for Q5KD75 as seed ortholog is 100%.
Bootstrap support for H3HEA9 as seed ortholog is 99%.

Group of orthologs #624. Best score 289 bits
Score difference with first non-orthologous sequence - C.neoformans:289 P.ramorum:78

Q5KLM1              	100.00%		H3HBW3              	100.00%
Bootstrap support for Q5KLM1 as seed ortholog is 100%.
Bootstrap support for H3HBW3 as seed ortholog is 95%.

Group of orthologs #625. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.ramorum:156

Q5K7W2              	100.00%		H3G8S2              	100.00%
Q5K7W1              	78.51%		
Bootstrap support for Q5K7W2 as seed ortholog is 100%.
Bootstrap support for H3G8S2 as seed ortholog is 100%.

Group of orthologs #626. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.ramorum:288

Q5KCK7              	100.00%		H3G8K1              	100.00%
Bootstrap support for Q5KCK7 as seed ortholog is 100%.
Bootstrap support for H3G8K1 as seed ortholog is 100%.

Group of orthologs #627. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.ramorum:288

Q5KK40              	100.00%		H3G9E0              	100.00%
Bootstrap support for Q5KK40 as seed ortholog is 100%.
Bootstrap support for H3G9E0 as seed ortholog is 100%.

Group of orthologs #628. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.ramorum:288

Q5KQ94              	100.00%		H3G5G9              	100.00%
Bootstrap support for Q5KQ94 as seed ortholog is 100%.
Bootstrap support for H3G5G9 as seed ortholog is 100%.

Group of orthologs #629. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:288 P.ramorum:288

Q5KJJ3              	100.00%		H3GTC8              	100.00%
Bootstrap support for Q5KJJ3 as seed ortholog is 100%.
Bootstrap support for H3GTC8 as seed ortholog is 100%.

Group of orthologs #630. Best score 288 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:288

Q5KEK6              	100.00%		H3H7P1              	100.00%
Bootstrap support for Q5KEK6 as seed ortholog is 99%.
Bootstrap support for H3H7P1 as seed ortholog is 100%.

Group of orthologs #631. Best score 287 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.ramorum:105

P0CS50              	100.00%		H3GAW1              	100.00%
                    	       		H3GJ37              	7.42%
Bootstrap support for P0CS50 as seed ortholog is 100%.
Bootstrap support for H3GAW1 as seed ortholog is 99%.

Group of orthologs #632. Best score 287 bits
Score difference with first non-orthologous sequence - C.neoformans:287 P.ramorum:287

Q5KI89              	100.00%		H3G8C1              	100.00%
Bootstrap support for Q5KI89 as seed ortholog is 100%.
Bootstrap support for H3G8C1 as seed ortholog is 100%.

Group of orthologs #633. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.ramorum:286

Q5KJQ1              	100.00%		H3G5C0              	100.00%
Bootstrap support for Q5KJQ1 as seed ortholog is 100%.
Bootstrap support for H3G5C0 as seed ortholog is 100%.

Group of orthologs #634. Best score 286 bits
Score difference with first non-orthologous sequence - C.neoformans:286 P.ramorum:286

Q5KPZ1              	100.00%		H3G9T2              	100.00%
Bootstrap support for Q5KPZ1 as seed ortholog is 100%.
Bootstrap support for H3G9T2 as seed ortholog is 100%.

Group of orthologs #635. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.ramorum:285

Q5KNF4              	100.00%		H3G6M0              	100.00%
Bootstrap support for Q5KNF4 as seed ortholog is 100%.
Bootstrap support for H3G6M0 as seed ortholog is 100%.

Group of orthologs #636. Best score 285 bits
Score difference with first non-orthologous sequence - C.neoformans:285 P.ramorum:285

Q5KHI3              	100.00%		H3HCN8              	100.00%
Bootstrap support for Q5KHI3 as seed ortholog is 100%.
Bootstrap support for H3HCN8 as seed ortholog is 100%.

Group of orthologs #637. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:24

Q5KP35              	100.00%		H3G757              	100.00%
Bootstrap support for Q5KP35 as seed ortholog is 100%.
Bootstrap support for H3G757 as seed ortholog is 78%.

Group of orthologs #638. Best score 284 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:144

P0CO44              	100.00%		H3GZH0              	100.00%
Bootstrap support for P0CO44 as seed ortholog is 100%.
Bootstrap support for H3GZH0 as seed ortholog is 100%.

Group of orthologs #639. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.ramorum:283

Q5K737              	100.00%		H3G700              	100.00%
                    	       		H3G7Y9              	11.92%
Bootstrap support for Q5K737 as seed ortholog is 100%.
Bootstrap support for H3G700 as seed ortholog is 100%.

Group of orthologs #640. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.ramorum:188

Q5K6Y3              	100.00%		H3GWS1              	100.00%
Bootstrap support for Q5K6Y3 as seed ortholog is 100%.
Bootstrap support for H3GWS1 as seed ortholog is 100%.

Group of orthologs #641. Best score 283 bits
Score difference with first non-orthologous sequence - C.neoformans:283 P.ramorum:136

Q5KGZ9              	100.00%		H3H368              	100.00%
Bootstrap support for Q5KGZ9 as seed ortholog is 100%.
Bootstrap support for H3H368 as seed ortholog is 99%.

Group of orthologs #642. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.ramorum:282

Q5KGF8              	100.00%		H3GP70              	100.00%
                    	       		H3GVL3              	11.52%
Bootstrap support for Q5KGF8 as seed ortholog is 100%.
Bootstrap support for H3GP70 as seed ortholog is 100%.

Group of orthologs #643. Best score 282 bits
Score difference with first non-orthologous sequence - C.neoformans:282 P.ramorum:282

Q5KG75              	100.00%		H3GUW2              	100.00%
                    	       		H3G7C3              	49.45%
Bootstrap support for Q5KG75 as seed ortholog is 100%.
Bootstrap support for H3GUW2 as seed ortholog is 100%.

Group of orthologs #644. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:281 P.ramorum:281

Q5KLS0              	100.00%		H3G8G2              	100.00%
Bootstrap support for Q5KLS0 as seed ortholog is 100%.
Bootstrap support for H3G8G2 as seed ortholog is 100%.

Group of orthologs #645. Best score 281 bits
Score difference with first non-orthologous sequence - C.neoformans:281 P.ramorum:203

Q5KPK4              	100.00%		H3G9Y2              	100.00%
Bootstrap support for Q5KPK4 as seed ortholog is 100%.
Bootstrap support for H3G9Y2 as seed ortholog is 100%.

Group of orthologs #646. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.ramorum:191

Q5K854              	100.00%		H3GB56              	100.00%
Q5KJY2              	100.00%		H3GAE8              	87.50%
Bootstrap support for Q5K854 as seed ortholog is 74%.
Alternative seed ortholog is Q5KC86 (15 bits away from this cluster)
Bootstrap support for Q5KJY2 as seed ortholog is 73%.
Alternative seed ortholog is Q5KC86 (15 bits away from this cluster)
Bootstrap support for H3GB56 as seed ortholog is 100%.

Group of orthologs #647. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:280 P.ramorum:280

Q5K7Q2              	100.00%		H3GHB8              	100.00%
Bootstrap support for Q5K7Q2 as seed ortholog is 100%.
Bootstrap support for H3GHB8 as seed ortholog is 100%.

Group of orthologs #648. Best score 280 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:280

Q5KPE3              	100.00%		H3GLL2              	100.00%
Bootstrap support for Q5KPE3 as seed ortholog is 100%.
Bootstrap support for H3GLL2 as seed ortholog is 100%.

Group of orthologs #649. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.ramorum:279

Q5KG73              	100.00%		H3GSS3              	100.00%
Bootstrap support for Q5KG73 as seed ortholog is 100%.
Bootstrap support for H3GSS3 as seed ortholog is 100%.

Group of orthologs #650. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:279 P.ramorum:279

Q5KNW3              	100.00%		H3GKU1              	100.00%
Bootstrap support for Q5KNW3 as seed ortholog is 100%.
Bootstrap support for H3GKU1 as seed ortholog is 100%.

Group of orthologs #651. Best score 279 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:279

P0CP02              	100.00%		H3HBV1              	100.00%
Bootstrap support for P0CP02 as seed ortholog is 99%.
Bootstrap support for H3HBV1 as seed ortholog is 100%.

Group of orthologs #652. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.ramorum:117

Q5KDU8              	100.00%		H3G895              	100.00%
Bootstrap support for Q5KDU8 as seed ortholog is 100%.
Bootstrap support for H3G895 as seed ortholog is 99%.

Group of orthologs #653. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.ramorum:278

Q5KH26              	100.00%		H3GI57              	100.00%
Bootstrap support for Q5KH26 as seed ortholog is 100%.
Bootstrap support for H3GI57 as seed ortholog is 100%.

Group of orthologs #654. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.ramorum:278

Q5KJM5              	100.00%		H3H4U3              	100.00%
Bootstrap support for Q5KJM5 as seed ortholog is 100%.
Bootstrap support for H3H4U3 as seed ortholog is 100%.

Group of orthologs #655. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.ramorum:187

Q5KIV0              	100.00%		H3HCD9              	100.00%
Bootstrap support for Q5KIV0 as seed ortholog is 100%.
Bootstrap support for H3HCD9 as seed ortholog is 100%.

Group of orthologs #656. Best score 278 bits
Score difference with first non-orthologous sequence - C.neoformans:278 P.ramorum:179

Q5KL44              	100.00%		H3HB77              	100.00%
Bootstrap support for Q5KL44 as seed ortholog is 100%.
Bootstrap support for H3HB77 as seed ortholog is 99%.

Group of orthologs #657. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.ramorum:277

P0CN92              	100.00%		H3G6D9              	100.00%
Bootstrap support for P0CN92 as seed ortholog is 100%.
Bootstrap support for H3G6D9 as seed ortholog is 100%.

Group of orthologs #658. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.ramorum:277

Q5KAL7              	100.00%		H3GJC5              	100.00%
Bootstrap support for Q5KAL7 as seed ortholog is 100%.
Bootstrap support for H3GJC5 as seed ortholog is 100%.

Group of orthologs #659. Best score 277 bits
Score difference with first non-orthologous sequence - C.neoformans:277 P.ramorum:277

Q5KP89              	100.00%		H3G7G1              	100.00%
Bootstrap support for Q5KP89 as seed ortholog is 100%.
Bootstrap support for H3G7G1 as seed ortholog is 100%.

Group of orthologs #660. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.ramorum:170

Q5K7V7              	100.00%		H3GAF7              	100.00%
Bootstrap support for Q5K7V7 as seed ortholog is 100%.
Bootstrap support for H3GAF7 as seed ortholog is 99%.

Group of orthologs #661. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.ramorum:276

Q5KCG6              	100.00%		H3GC60              	100.00%
Bootstrap support for Q5KCG6 as seed ortholog is 100%.
Bootstrap support for H3GC60 as seed ortholog is 100%.

Group of orthologs #662. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.ramorum:134

Q5KNZ3              	100.00%		H3G8V3              	100.00%
Bootstrap support for Q5KNZ3 as seed ortholog is 99%.
Bootstrap support for H3G8V3 as seed ortholog is 99%.

Group of orthologs #663. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.ramorum:276

Q5KP92              	100.00%		H3GYT1              	100.00%
Bootstrap support for Q5KP92 as seed ortholog is 100%.
Bootstrap support for H3GYT1 as seed ortholog is 100%.

Group of orthologs #664. Best score 276 bits
Score difference with first non-orthologous sequence - C.neoformans:276 P.ramorum:219

Q5KK45              	100.00%		H3HCG4              	100.00%
Bootstrap support for Q5KK45 as seed ortholog is 100%.
Bootstrap support for H3HCG4 as seed ortholog is 100%.

Group of orthologs #665. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.ramorum:275

Q5KFV6              	100.00%		H3GSD7              	100.00%
Bootstrap support for Q5KFV6 as seed ortholog is 100%.
Bootstrap support for H3GSD7 as seed ortholog is 100%.

Group of orthologs #666. Best score 275 bits
Score difference with first non-orthologous sequence - C.neoformans:275 P.ramorum:275

Q5KNI6              	100.00%		H3GL87              	100.00%
Bootstrap support for Q5KNI6 as seed ortholog is 100%.
Bootstrap support for H3GL87 as seed ortholog is 100%.

Group of orthologs #667. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:45

Q5KP65              	100.00%		H3G866              	100.00%
Bootstrap support for Q5KP65 as seed ortholog is 98%.
Bootstrap support for H3G866 as seed ortholog is 89%.

Group of orthologs #668. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.ramorum:274

Q5KQ60              	100.00%		H3G7T3              	100.00%
Bootstrap support for Q5KQ60 as seed ortholog is 100%.
Bootstrap support for H3G7T3 as seed ortholog is 100%.

Group of orthologs #669. Best score 274 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:152

Q5KKF5              	100.00%		H3GNQ4              	100.00%
Bootstrap support for Q5KKF5 as seed ortholog is 99%.
Bootstrap support for H3GNQ4 as seed ortholog is 99%.

Group of orthologs #670. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.ramorum:169

Q5KAT4              	100.00%		H3G8P1              	100.00%
Q5KAV3              	60.10%		
Bootstrap support for Q5KAT4 as seed ortholog is 100%.
Bootstrap support for H3G8P1 as seed ortholog is 99%.

Group of orthologs #671. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.ramorum:273

Q5KDM0              	100.00%		H3G7S9              	100.00%
Bootstrap support for Q5KDM0 as seed ortholog is 100%.
Bootstrap support for H3G7S9 as seed ortholog is 100%.

Group of orthologs #672. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:273 P.ramorum:273

Q5KMA6              	100.00%		H3G927              	100.00%
Bootstrap support for Q5KMA6 as seed ortholog is 100%.
Bootstrap support for H3G927 as seed ortholog is 100%.

Group of orthologs #673. Best score 273 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.ramorum:273

Q5KL06              	100.00%		H3GVP4              	100.00%
Bootstrap support for Q5KL06 as seed ortholog is 99%.
Bootstrap support for H3GVP4 as seed ortholog is 100%.

Group of orthologs #674. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:170

Q5K705              	100.00%		H3GDZ7              	100.00%
                    	       		H3GPF0              	49.57%
                    	       		H3G604              	26.52%
                    	       		H3G605              	25.53%
                    	       		H3G5B9              	13.38%
                    	       		H3G606              	10.04%
Bootstrap support for Q5K705 as seed ortholog is 99%.
Bootstrap support for H3GDZ7 as seed ortholog is 99%.

Group of orthologs #675. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:272 P.ramorum:97

P0CP12              	100.00%		H3G7L2              	100.00%
Bootstrap support for P0CP12 as seed ortholog is 100%.
Bootstrap support for H3G7L2 as seed ortholog is 96%.

Group of orthologs #676. Best score 272 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.ramorum:183

Q5KC50              	100.00%		H3GA11              	100.00%
Bootstrap support for Q5KC50 as seed ortholog is 100%.
Bootstrap support for H3GA11 as seed ortholog is 100%.

Group of orthologs #677. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.ramorum:271

Q5KK62              	100.00%		H3GAQ0              	100.00%
Bootstrap support for Q5KK62 as seed ortholog is 100%.
Bootstrap support for H3GAQ0 as seed ortholog is 100%.

Group of orthologs #678. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:271 P.ramorum:271

Q5KQ18              	100.00%		H3G994              	100.00%
Bootstrap support for Q5KQ18 as seed ortholog is 100%.
Bootstrap support for H3G994 as seed ortholog is 100%.

Group of orthologs #679. Best score 271 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.ramorum:271

Q5KK47              	100.00%		H3GN50              	100.00%
Bootstrap support for Q5KK47 as seed ortholog is 99%.
Bootstrap support for H3GN50 as seed ortholog is 100%.

Group of orthologs #680. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.ramorum:124

Q5K9D4              	100.00%		H3G892              	100.00%
Q5K9D8              	47.56%		H3G9C1              	50.43%
Bootstrap support for Q5K9D4 as seed ortholog is 100%.
Bootstrap support for H3G892 as seed ortholog is 99%.

Group of orthologs #681. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.ramorum:270

Q5K7J7              	100.00%		H3GA55              	100.00%
Bootstrap support for Q5K7J7 as seed ortholog is 100%.
Bootstrap support for H3GA55 as seed ortholog is 100%.

Group of orthologs #682. Best score 270 bits
Score difference with first non-orthologous sequence - C.neoformans:270 P.ramorum:270

Q5KN95              	100.00%		H3GTW5              	100.00%
Bootstrap support for Q5KN95 as seed ortholog is 100%.
Bootstrap support for H3GTW5 as seed ortholog is 100%.

Group of orthologs #683. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:96

Q5KG79              	100.00%		H3G775              	100.00%
                    	       		H3G697              	22.96%
                    	       		H3G698              	22.65%
Bootstrap support for Q5KG79 as seed ortholog is 100%.
Bootstrap support for H3G775 as seed ortholog is 96%.

Group of orthologs #684. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:137

Q5K840              	100.00%		H3GQ46              	100.00%
Q5K833              	76.28%		H3GAB1              	28.28%
Bootstrap support for Q5K840 as seed ortholog is 99%.
Bootstrap support for H3GQ46 as seed ortholog is 99%.

Group of orthologs #685. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:269

Q5K7Y1              	100.00%		H3HCH5              	100.00%
                    	       		H3HAU2              	6.04%
Bootstrap support for Q5K7Y1 as seed ortholog is 100%.
Bootstrap support for H3HCH5 as seed ortholog is 100%.

Group of orthologs #686. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:269

Q5KM46              	100.00%		H3G5B2              	100.00%
Bootstrap support for Q5KM46 as seed ortholog is 100%.
Bootstrap support for H3G5B2 as seed ortholog is 100%.

Group of orthologs #687. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:269

Q5KL32              	100.00%		H3GA31              	100.00%
Bootstrap support for Q5KL32 as seed ortholog is 100%.
Bootstrap support for H3GA31 as seed ortholog is 100%.

Group of orthologs #688. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:170

Q5KBU1              	100.00%		H3GU85              	100.00%
Bootstrap support for Q5KBU1 as seed ortholog is 100%.
Bootstrap support for H3GU85 as seed ortholog is 100%.

Group of orthologs #689. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:269

P0CS38              	100.00%		H3HDH6              	100.00%
Bootstrap support for P0CS38 as seed ortholog is 100%.
Bootstrap support for H3HDH6 as seed ortholog is 100%.

Group of orthologs #690. Best score 269 bits
Score difference with first non-orthologous sequence - C.neoformans:269 P.ramorum:269

Q5KFC5              	100.00%		H3HCF7              	100.00%
Bootstrap support for Q5KFC5 as seed ortholog is 100%.
Bootstrap support for H3HCF7 as seed ortholog is 100%.

Group of orthologs #691. Best score 268 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.ramorum:268

Q5KP54              	100.00%		H3H0M5              	100.00%
Bootstrap support for Q5KP54 as seed ortholog is 99%.
Bootstrap support for H3H0M5 as seed ortholog is 100%.

Group of orthologs #692. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.ramorum:267

Q5KG36              	100.00%		H3G9A8              	100.00%
                    	       		H3G8F9              	50.22%
Bootstrap support for Q5KG36 as seed ortholog is 100%.
Bootstrap support for H3G9A8 as seed ortholog is 100%.

Group of orthologs #693. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.ramorum:267

Q5KCD2              	100.00%		H3G943              	100.00%
Bootstrap support for Q5KCD2 as seed ortholog is 100%.
Bootstrap support for H3G943 as seed ortholog is 100%.

Group of orthologs #694. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.ramorum:267

Q5KJ20              	100.00%		H3G5E3              	100.00%
Bootstrap support for Q5KJ20 as seed ortholog is 100%.
Bootstrap support for H3G5E3 as seed ortholog is 100%.

Group of orthologs #695. Best score 267 bits
Score difference with first non-orthologous sequence - C.neoformans:267 P.ramorum:267

Q5KGE3              	100.00%		H3GAM0              	100.00%
Bootstrap support for Q5KGE3 as seed ortholog is 100%.
Bootstrap support for H3GAM0 as seed ortholog is 100%.

Group of orthologs #696. Best score 266 bits
Score difference with first non-orthologous sequence - C.neoformans:266 P.ramorum:266

Q5KPS8              	100.00%		H3GA02              	100.00%
Q5KG89              	8.06%		
P0CN96              	7.83%		
Bootstrap support for Q5KPS8 as seed ortholog is 100%.
Bootstrap support for H3GA02 as seed ortholog is 100%.

Group of orthologs #697. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:188

Q5KKS0              	100.00%		H3G867              	100.00%
Bootstrap support for Q5KKS0 as seed ortholog is 99%.
Bootstrap support for H3G867 as seed ortholog is 99%.

Group of orthologs #698. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.ramorum:265

Q5KKC2              	100.00%		H3GNU1              	100.00%
Bootstrap support for Q5KKC2 as seed ortholog is 100%.
Bootstrap support for H3GNU1 as seed ortholog is 100%.

Group of orthologs #699. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:265

Q5K9J9              	100.00%		H3HD43              	100.00%
Bootstrap support for Q5K9J9 as seed ortholog is 98%.
Bootstrap support for H3HD43 as seed ortholog is 100%.

Group of orthologs #700. Best score 265 bits
Score difference with first non-orthologous sequence - C.neoformans:265 P.ramorum:265

Q5KJ16              	100.00%		H3HCZ5              	100.00%
Bootstrap support for Q5KJ16 as seed ortholog is 100%.
Bootstrap support for H3HCZ5 as seed ortholog is 100%.

Group of orthologs #701. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.ramorum:264

Q5K6Y9              	100.00%		H3GAC3              	100.00%
Bootstrap support for Q5K6Y9 as seed ortholog is 100%.
Bootstrap support for H3GAC3 as seed ortholog is 100%.

Group of orthologs #702. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.ramorum:264

Q5K6V3              	100.00%		H3GAP0              	100.00%
Bootstrap support for Q5K6V3 as seed ortholog is 100%.
Bootstrap support for H3GAP0 as seed ortholog is 100%.

Group of orthologs #703. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:133

Q5K9V2              	100.00%		H3G9D1              	100.00%
Bootstrap support for Q5K9V2 as seed ortholog is 100%.
Bootstrap support for H3G9D1 as seed ortholog is 100%.

Group of orthologs #704. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.ramorum:264

P0CP70              	100.00%		H3GHI8              	100.00%
Bootstrap support for P0CP70 as seed ortholog is 99%.
Bootstrap support for H3GHI8 as seed ortholog is 100%.

Group of orthologs #705. Best score 264 bits
Score difference with first non-orthologous sequence - C.neoformans:264 P.ramorum:264

Q5KMV4              	100.00%		H3GI71              	100.00%
Bootstrap support for Q5KMV4 as seed ortholog is 100%.
Bootstrap support for H3GI71 as seed ortholog is 100%.

Group of orthologs #706. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:263

Q5KLS5              	100.00%		H3HBZ9              	100.00%
                    	       		H3H7F1              	9.00%
                    	       		H3GEF2              	6.12%
Bootstrap support for Q5KLS5 as seed ortholog is 100%.
Bootstrap support for H3HBZ9 as seed ortholog is 100%.

Group of orthologs #707. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.ramorum:263

Q5KHX7              	100.00%		H3G7N7              	100.00%
Bootstrap support for Q5KHX7 as seed ortholog is 100%.
Bootstrap support for H3G7N7 as seed ortholog is 100%.

Group of orthologs #708. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:263

Q5KAH0              	100.00%		H3GET8              	100.00%
Bootstrap support for Q5KAH0 as seed ortholog is 100%.
Bootstrap support for H3GET8 as seed ortholog is 100%.

Group of orthologs #709. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:263

Q5KFG2              	100.00%		H3GAD9              	100.00%
Bootstrap support for Q5KFG2 as seed ortholog is 100%.
Bootstrap support for H3GAD9 as seed ortholog is 100%.

Group of orthologs #710. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:263 P.ramorum:263

Q5KCA4              	100.00%		H3GLR2              	100.00%
Bootstrap support for Q5KCA4 as seed ortholog is 100%.
Bootstrap support for H3GLR2 as seed ortholog is 100%.

Group of orthologs #711. Best score 263 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:263

Q9HFU4              	100.00%		H3GGZ4              	100.00%
Bootstrap support for Q9HFU4 as seed ortholog is 99%.
Bootstrap support for H3GGZ4 as seed ortholog is 100%.

Group of orthologs #712. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.ramorum:262

P0CN24              	100.00%		H3GZH2              	100.00%
Bootstrap support for P0CN24 as seed ortholog is 100%.
Bootstrap support for H3GZH2 as seed ortholog is 100%.

Group of orthologs #713. Best score 262 bits
Score difference with first non-orthologous sequence - C.neoformans:262 P.ramorum:262

Q5KEA3              	100.00%		H3H1H9              	100.00%
Bootstrap support for Q5KEA3 as seed ortholog is 100%.
Bootstrap support for H3H1H9 as seed ortholog is 100%.

Group of orthologs #714. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.ramorum:261

Q5KBR5              	100.00%		H3G601              	100.00%
Bootstrap support for Q5KBR5 as seed ortholog is 100%.
Bootstrap support for H3G601 as seed ortholog is 100%.

Group of orthologs #715. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.ramorum:261

Q5KBN7              	100.00%		H3GBR9              	100.00%
Bootstrap support for Q5KBN7 as seed ortholog is 100%.
Bootstrap support for H3GBR9 as seed ortholog is 100%.

Group of orthologs #716. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.ramorum:112

Q5KGZ4              	100.00%		H3G8U7              	100.00%
Bootstrap support for Q5KGZ4 as seed ortholog is 99%.
Bootstrap support for H3G8U7 as seed ortholog is 100%.

Group of orthologs #717. Best score 261 bits
Score difference with first non-orthologous sequence - C.neoformans:261 P.ramorum:261

Q5KLL4              	100.00%		H3G9M2              	100.00%
Bootstrap support for Q5KLL4 as seed ortholog is 100%.
Bootstrap support for H3G9M2 as seed ortholog is 100%.

Group of orthologs #718. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:91

Q5K9E7              	100.00%		H3GL38              	100.00%
                    	       		H3GL37              	68.88%
                    	       		H3GL36              	29.86%
                    	       		H3GL33              	28.48%
                    	       		H3GL34              	25.47%
                    	       		H3G907              	13.05%
Bootstrap support for Q5K9E7 as seed ortholog is 99%.
Bootstrap support for H3GL38 as seed ortholog is 97%.

Group of orthologs #719. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:99

Q5K7V8              	100.00%		H3GA13              	100.00%
                    	       		H3HAB9              	70.63%
Bootstrap support for Q5K7V8 as seed ortholog is 95%.
Bootstrap support for H3GA13 as seed ortholog is 97%.

Group of orthologs #720. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.ramorum:116

Q5KDN4              	100.00%		H3G7X2              	100.00%
Bootstrap support for Q5KDN4 as seed ortholog is 100%.
Bootstrap support for H3G7X2 as seed ortholog is 99%.

Group of orthologs #721. Best score 260 bits
Score difference with first non-orthologous sequence - C.neoformans:260 P.ramorum:260

Q5KJD4              	100.00%		H3G980              	100.00%
Bootstrap support for Q5KJD4 as seed ortholog is 100%.
Bootstrap support for H3G980 as seed ortholog is 100%.

Group of orthologs #722. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.ramorum:259

Q5KNX1              	100.00%		H3G6G2              	100.00%
                    	       		H3GB26              	99.64%
Bootstrap support for Q5KNX1 as seed ortholog is 100%.
Bootstrap support for H3G6G2 as seed ortholog is 100%.

Group of orthologs #723. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.ramorum:259

Q5KGP7              	100.00%		H3G793              	100.00%
Bootstrap support for Q5KGP7 as seed ortholog is 100%.
Bootstrap support for H3G793 as seed ortholog is 100%.

Group of orthologs #724. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:13

Q5KK41              	100.00%		H3G925              	100.00%
Bootstrap support for Q5KK41 as seed ortholog is 99%.
Bootstrap support for H3G925 as seed ortholog is 69%.
Alternative seed ortholog is H3G5A9 (13 bits away from this cluster)

Group of orthologs #725. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.ramorum:131

Q5KQ34              	100.00%		H3G8J0              	100.00%
Bootstrap support for Q5KQ34 as seed ortholog is 99%.
Bootstrap support for H3G8J0 as seed ortholog is 99%.

Group of orthologs #726. Best score 259 bits
Score difference with first non-orthologous sequence - C.neoformans:259 P.ramorum:259

Q5KIW5              	100.00%		H3HBM0              	100.00%
Bootstrap support for Q5KIW5 as seed ortholog is 100%.
Bootstrap support for H3HBM0 as seed ortholog is 100%.

Group of orthologs #727. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.ramorum:258

Q5K9F7              	100.00%		H3GAL6              	100.00%
Bootstrap support for Q5K9F7 as seed ortholog is 100%.
Bootstrap support for H3GAL6 as seed ortholog is 100%.

Group of orthologs #728. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.ramorum:258

Q5KP37              	100.00%		H3G9I6              	100.00%
Bootstrap support for Q5KP37 as seed ortholog is 85%.
Bootstrap support for H3G9I6 as seed ortholog is 100%.

Group of orthologs #729. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:83

Q5KFM4              	100.00%		H3GIY2              	100.00%
Bootstrap support for Q5KFM4 as seed ortholog is 100%.
Bootstrap support for H3GIY2 as seed ortholog is 91%.

Group of orthologs #730. Best score 258 bits
Score difference with first non-orthologous sequence - C.neoformans:258 P.ramorum:258

Q5KIQ7              	100.00%		H3H2P4              	100.00%
Bootstrap support for Q5KIQ7 as seed ortholog is 100%.
Bootstrap support for H3H2P4 as seed ortholog is 100%.

Group of orthologs #731. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.ramorum:88

Q5K8F5              	100.00%		H3G6B6              	100.00%
Bootstrap support for Q5K8F5 as seed ortholog is 86%.
Bootstrap support for H3G6B6 as seed ortholog is 99%.

Group of orthologs #732. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:257 P.ramorum:257

Q5KNJ8              	100.00%		H3GA06              	100.00%
Bootstrap support for Q5KNJ8 as seed ortholog is 100%.
Bootstrap support for H3GA06 as seed ortholog is 100%.

Group of orthologs #733. Best score 257 bits
Score difference with first non-orthologous sequence - C.neoformans:257 P.ramorum:257

P0CR44              	100.00%		H3HE78              	100.00%
Bootstrap support for P0CR44 as seed ortholog is 100%.
Bootstrap support for H3HE78 as seed ortholog is 100%.

Group of orthologs #734. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.ramorum:256

Q5KPU5              	100.00%		H3GKW0              	100.00%
                    	       		H3G636              	56.64%
                    	       		H3G635              	38.50%
                    	       		H3G638              	31.19%
Bootstrap support for Q5KPU5 as seed ortholog is 100%.
Bootstrap support for H3GKW0 as seed ortholog is 100%.

Group of orthologs #735. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:256 P.ramorum:256

Q5KDJ7              	100.00%		H3G699              	100.00%
Bootstrap support for Q5KDJ7 as seed ortholog is 100%.
Bootstrap support for H3G699 as seed ortholog is 100%.

Group of orthologs #736. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.ramorum:256

P0CN08              	100.00%		H3HDA1              	100.00%
Bootstrap support for P0CN08 as seed ortholog is 99%.
Bootstrap support for H3HDA1 as seed ortholog is 100%.

Group of orthologs #737. Best score 256 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:179

Q5K913              	100.00%		H3HBW7              	100.00%
Bootstrap support for Q5K913 as seed ortholog is 90%.
Bootstrap support for H3HBW7 as seed ortholog is 100%.

Group of orthologs #738. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.ramorum:255

Q5KEW8              	100.00%		H3GB48              	100.00%
Q5KD36              	34.81%		H3H7S5              	23.81%
Q5KDR9              	34.32%		
Bootstrap support for Q5KEW8 as seed ortholog is 100%.
Bootstrap support for H3GB48 as seed ortholog is 100%.

Group of orthologs #739. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:255

Q5KHL0              	100.00%		H3GUK6              	100.00%
                    	       		H3GRM9              	5.42%
Bootstrap support for Q5KHL0 as seed ortholog is 99%.
Bootstrap support for H3GUK6 as seed ortholog is 100%.

Group of orthologs #740. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.ramorum:164

P0CP54              	100.00%		H3G4X6              	100.00%
Bootstrap support for P0CP54 as seed ortholog is 89%.
Bootstrap support for H3G4X6 as seed ortholog is 100%.

Group of orthologs #741. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.ramorum:255

Q5KIJ1              	100.00%		H3G4X4              	100.00%
Bootstrap support for Q5KIJ1 as seed ortholog is 100%.
Bootstrap support for H3G4X4 as seed ortholog is 100%.

Group of orthologs #742. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.ramorum:255

Q5KE84              	100.00%		H3H0F3              	100.00%
Bootstrap support for Q5KE84 as seed ortholog is 100%.
Bootstrap support for H3H0F3 as seed ortholog is 100%.

Group of orthologs #743. Best score 255 bits
Score difference with first non-orthologous sequence - C.neoformans:255 P.ramorum:255

Q5KGG9              	100.00%		H3GZ80              	100.00%
Bootstrap support for Q5KGG9 as seed ortholog is 100%.
Bootstrap support for H3GZ80 as seed ortholog is 100%.

Group of orthologs #744. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.ramorum:254

P0CS14              	100.00%		H3GC14              	100.00%
Bootstrap support for P0CS14 as seed ortholog is 100%.
Bootstrap support for H3GC14 as seed ortholog is 100%.

Group of orthologs #745. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.ramorum:254

Q5KPZ5              	100.00%		H3GGH2              	100.00%
Bootstrap support for Q5KPZ5 as seed ortholog is 100%.
Bootstrap support for H3GGH2 as seed ortholog is 100%.

Group of orthologs #746. Best score 254 bits
Score difference with first non-orthologous sequence - C.neoformans:254 P.ramorum:254

Q5KL43              	100.00%		H3GZ97              	100.00%
Bootstrap support for Q5KL43 as seed ortholog is 100%.
Bootstrap support for H3GZ97 as seed ortholog is 100%.

Group of orthologs #747. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.ramorum:46

Q5KBJ1              	100.00%		H3G9P4              	100.00%
                    	       		H3G7J7              	32.20%
Bootstrap support for Q5KBJ1 as seed ortholog is 83%.
Bootstrap support for H3G9P4 as seed ortholog is 85%.

Group of orthologs #748. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.ramorum:253

Q5K8G1              	100.00%		H3GA48              	100.00%
Bootstrap support for Q5K8G1 as seed ortholog is 100%.
Bootstrap support for H3GA48 as seed ortholog is 100%.

Group of orthologs #749. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.ramorum:253

Q5KGW0              	100.00%		H3G8V6              	100.00%
Bootstrap support for Q5KGW0 as seed ortholog is 100%.
Bootstrap support for H3G8V6 as seed ortholog is 100%.

Group of orthologs #750. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.ramorum:253

Q5KCK0              	100.00%		H3GIV4              	100.00%
Bootstrap support for Q5KCK0 as seed ortholog is 100%.
Bootstrap support for H3GIV4 as seed ortholog is 100%.

Group of orthologs #751. Best score 253 bits
Score difference with first non-orthologous sequence - C.neoformans:253 P.ramorum:253

Q5KLR9              	100.00%		H3HDR1              	100.00%
Bootstrap support for Q5KLR9 as seed ortholog is 100%.
Bootstrap support for H3HDR1 as seed ortholog is 100%.

Group of orthologs #752. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:29 P.ramorum:133

Q5KJW4              	100.00%		H3H7L0              	100.00%
                    	       		H3GAZ4              	96.81%
                    	       		H3H7K9              	63.83%
                    	       		H3GCY4              	56.60%
                    	       		H3GAV7              	53.83%
                    	       		H3GAR5              	47.02%
                    	       		H3G998              	46.38%
                    	       		H3GAR6              	45.96%
                    	       		H3G9A0              	45.74%
                    	       		H3GA14              	43.19%
                    	       		H3GAJ7              	40.43%
                    	       		H3G6J3              	14.68%
Bootstrap support for Q5KJW4 as seed ortholog is 75%.
Bootstrap support for H3H7L0 as seed ortholog is 99%.

Group of orthologs #753. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.ramorum:252

Q5K8A2              	100.00%		H3GC35              	100.00%
                    	       		H3H1M2              	47.13%
Bootstrap support for Q5K8A2 as seed ortholog is 100%.
Bootstrap support for H3GC35 as seed ortholog is 100%.

Group of orthologs #754. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.ramorum:252

P0CN94              	100.00%		H3G6M9              	100.00%
Bootstrap support for P0CN94 as seed ortholog is 100%.
Bootstrap support for H3G6M9 as seed ortholog is 100%.

Group of orthologs #755. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.ramorum:141

P0CR30              	100.00%		H3G8B2              	100.00%
Bootstrap support for P0CR30 as seed ortholog is 100%.
Bootstrap support for H3G8B2 as seed ortholog is 100%.

Group of orthologs #756. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.ramorum:252

Q5K9Y4              	100.00%		H3G7V7              	100.00%
Bootstrap support for Q5K9Y4 as seed ortholog is 100%.
Bootstrap support for H3G7V7 as seed ortholog is 100%.

Group of orthologs #757. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.ramorum:252

Q5KJB0              	100.00%		H3GBX7              	100.00%
Bootstrap support for Q5KJB0 as seed ortholog is 100%.
Bootstrap support for H3GBX7 as seed ortholog is 100%.

Group of orthologs #758. Best score 252 bits
Score difference with first non-orthologous sequence - C.neoformans:252 P.ramorum:252

Q5KEG8              	100.00%		H3GQR9              	100.00%
Bootstrap support for Q5KEG8 as seed ortholog is 100%.
Bootstrap support for H3GQR9 as seed ortholog is 100%.

Group of orthologs #759. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.ramorum:85

Q5K7Y4              	100.00%		H3G7H3              	100.00%
Bootstrap support for Q5K7Y4 as seed ortholog is 100%.
Bootstrap support for H3G7H3 as seed ortholog is 97%.

Group of orthologs #760. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.ramorum:251

Q5KEZ6              	100.00%		H3GB03              	100.00%
Bootstrap support for Q5KEZ6 as seed ortholog is 100%.
Bootstrap support for H3GB03 as seed ortholog is 100%.

Group of orthologs #761. Best score 251 bits
Score difference with first non-orthologous sequence - C.neoformans:251 P.ramorum:251

Q5KIG6              	100.00%		H3GV90              	100.00%
Bootstrap support for Q5KIG6 as seed ortholog is 100%.
Bootstrap support for H3GV90 as seed ortholog is 100%.

Group of orthologs #762. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.ramorum:249

Q5K6W9              	100.00%		H3GRT1              	100.00%
                    	       		H3H884              	100.00%
Bootstrap support for Q5K6W9 as seed ortholog is 100%.
Bootstrap support for H3GRT1 as seed ortholog is 100%.
Bootstrap support for H3H884 as seed ortholog is 100%.

Group of orthologs #763. Best score 249 bits
Score difference with first non-orthologous sequence - C.neoformans:249 P.ramorum:249

Q5KGF9              	100.00%		H3G5E0              	100.00%
Bootstrap support for Q5KGF9 as seed ortholog is 100%.
Bootstrap support for H3G5E0 as seed ortholog is 100%.

Group of orthologs #764. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.ramorum:48

Q5KCH7              	100.00%		H3GW41              	100.00%
                    	       		H3HB65              	16.91%
                    	       		H3GIW2              	16.62%
Bootstrap support for Q5KCH7 as seed ortholog is 78%.
Bootstrap support for H3GW41 as seed ortholog is 90%.

Group of orthologs #765. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.ramorum:248

P0CO46              	100.00%		H3G8F2              	100.00%
Bootstrap support for P0CO46 as seed ortholog is 100%.
Bootstrap support for H3G8F2 as seed ortholog is 100%.

Group of orthologs #766. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.ramorum:248

Q5K8D6              	100.00%		H3G7M3              	100.00%
Bootstrap support for Q5K8D6 as seed ortholog is 100%.
Bootstrap support for H3G7M3 as seed ortholog is 100%.

Group of orthologs #767. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:248 P.ramorum:248

Q5K947              	100.00%		H3GAN3              	100.00%
Bootstrap support for Q5K947 as seed ortholog is 100%.
Bootstrap support for H3GAN3 as seed ortholog is 100%.

Group of orthologs #768. Best score 248 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:99

Q5KJK0              	100.00%		H3G9K1              	100.00%
Bootstrap support for Q5KJK0 as seed ortholog is 100%.
Bootstrap support for H3G9K1 as seed ortholog is 100%.

Group of orthologs #769. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:9 P.ramorum:56

Q5KCI1              	100.00%		H3GAJ5              	100.00%
                    	       		H3H1C9              	64.90%
                    	       		H3GB81              	52.94%
                    	       		H3G9B6              	52.18%
                    	       		H3G9B4              	49.34%
                    	       		H3GB00              	44.40%
                    	       		H3GAI6              	42.50%
                    	       		H3G8H3              	39.47%
                    	       		H3GAP7              	7.97%
                    	       		H3H151              	7.59%
                    	       		H3G622              	7.21%
                    	       		H3G5T7              	5.12%
Bootstrap support for Q5KCI1 as seed ortholog is 57%.
Alternative seed ortholog is Q5KIN0 (9 bits away from this cluster)
Bootstrap support for H3GAJ5 as seed ortholog is 90%.

Group of orthologs #770. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:247

P0CO14              	100.00%		H3H1J9              	100.00%
Bootstrap support for P0CO14 as seed ortholog is 100%.
Bootstrap support for H3H1J9 as seed ortholog is 100%.

Group of orthologs #771. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:247

Q5KGH6              	100.00%		H3GS72              	100.00%
Bootstrap support for Q5KGH6 as seed ortholog is 100%.
Bootstrap support for H3GS72 as seed ortholog is 100%.

Group of orthologs #772. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:247

Q5KJX8              	100.00%		H3GPL3              	100.00%
Bootstrap support for Q5KJX8 as seed ortholog is 100%.
Bootstrap support for H3GPL3 as seed ortholog is 100%.

Group of orthologs #773. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:50

Q5KI67              	100.00%		H3GZX9              	100.00%
Bootstrap support for Q5KI67 as seed ortholog is 100%.
Bootstrap support for H3GZX9 as seed ortholog is 92%.

Group of orthologs #774. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:247

Q5K726              	100.00%		H3HBD8              	100.00%
Bootstrap support for Q5K726 as seed ortholog is 100%.
Bootstrap support for H3HBD8 as seed ortholog is 100%.

Group of orthologs #775. Best score 247 bits
Score difference with first non-orthologous sequence - C.neoformans:247 P.ramorum:247

Q5KPQ4              	100.00%		H3GVD4              	100.00%
Bootstrap support for Q5KPQ4 as seed ortholog is 100%.
Bootstrap support for H3GVD4 as seed ortholog is 100%.

Group of orthologs #776. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.ramorum:7

P0CP52              	100.00%		H3GR10              	100.00%
                    	       		H3HCA6              	51.30%
Bootstrap support for P0CP52 as seed ortholog is 100%.
Bootstrap support for H3GR10 as seed ortholog is 52%.
Alternative seed ortholog is H3GKT2 (7 bits away from this cluster)

Group of orthologs #777. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.ramorum:246

Q5KA07              	100.00%		H3GAH9              	100.00%
Bootstrap support for Q5KA07 as seed ortholog is 100%.
Bootstrap support for H3GAH9 as seed ortholog is 100%.

Group of orthologs #778. Best score 246 bits
Score difference with first non-orthologous sequence - C.neoformans:246 P.ramorum:246

Q5KBQ8              	100.00%		H3GYD8              	100.00%
Bootstrap support for Q5KBQ8 as seed ortholog is 100%.
Bootstrap support for H3GYD8 as seed ortholog is 100%.

Group of orthologs #779. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.ramorum:245

Q5KE27              	100.00%		H3GPQ1              	100.00%
                    	       		H3HAL4              	97.13%
                    	       		H3H851              	67.97%
                    	       		H3GPP8              	57.91%
                    	       		H3GDN1              	55.65%
                    	       		H3GDN0              	54.83%
Bootstrap support for Q5KE27 as seed ortholog is 67%.
Alternative seed ortholog is Q5KKQ7 (15 bits away from this cluster)
Bootstrap support for H3GPQ1 as seed ortholog is 100%.

Group of orthologs #780. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:120

Q5KA58              	100.00%		H3GYI2              	100.00%
                    	       		H3GYI3              	72.68%
                    	       		H3GA89              	66.15%
                    	       		H3GYI4              	61.06%
                    	       		H3G620              	24.67%
Bootstrap support for Q5KA58 as seed ortholog is 100%.
Bootstrap support for H3GYI2 as seed ortholog is 99%.

Group of orthologs #781. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:75

Q5KDX8              	100.00%		H3GAR4              	100.00%
Q5KCA3              	17.59%		
Bootstrap support for Q5KDX8 as seed ortholog is 100%.
Bootstrap support for H3GAR4 as seed ortholog is 98%.

Group of orthologs #782. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:245

P0CN50              	100.00%		H3G7Y3              	100.00%
Bootstrap support for P0CN50 as seed ortholog is 100%.
Bootstrap support for H3G7Y3 as seed ortholog is 100%.

Group of orthologs #783. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:173

Q5KAX4              	100.00%		H3G6T6              	100.00%
Bootstrap support for Q5KAX4 as seed ortholog is 100%.
Bootstrap support for H3G6T6 as seed ortholog is 99%.

Group of orthologs #784. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:245

Q5K898              	100.00%		H3GBW1              	100.00%
Bootstrap support for Q5K898 as seed ortholog is 99%.
Bootstrap support for H3GBW1 as seed ortholog is 100%.

Group of orthologs #785. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:69

Q5KA61              	100.00%		H3GLH0              	100.00%
Bootstrap support for Q5KA61 as seed ortholog is 100%.
Bootstrap support for H3GLH0 as seed ortholog is 97%.

Group of orthologs #786. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:245

Q5KPB8              	100.00%		H3GJS7              	100.00%
Bootstrap support for Q5KPB8 as seed ortholog is 100%.
Bootstrap support for H3GJS7 as seed ortholog is 100%.

Group of orthologs #787. Best score 245 bits
Score difference with first non-orthologous sequence - C.neoformans:245 P.ramorum:245

Q5KH08              	100.00%		H3GSJ6              	100.00%
Bootstrap support for Q5KH08 as seed ortholog is 100%.
Bootstrap support for H3GSJ6 as seed ortholog is 100%.

Group of orthologs #788. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.ramorum:244

P0CN56              	100.00%		H3GMF5              	100.00%
Bootstrap support for P0CN56 as seed ortholog is 100%.
Bootstrap support for H3GMF5 as seed ortholog is 100%.

Group of orthologs #789. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:244

Q5KIT6              	100.00%		H3GJP3              	100.00%
Bootstrap support for Q5KIT6 as seed ortholog is 56%.
Alternative seed ortholog is Q5K778 (144 bits away from this cluster)
Bootstrap support for H3GJP3 as seed ortholog is 100%.

Group of orthologs #790. Best score 244 bits
Score difference with first non-orthologous sequence - C.neoformans:244 P.ramorum:244

Q5KM57              	100.00%		H3GRM8              	100.00%
Bootstrap support for Q5KM57 as seed ortholog is 100%.
Bootstrap support for H3GRM8 as seed ortholog is 100%.

Group of orthologs #791. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.ramorum:194

P0CS80              	100.00%		H3G8D5              	100.00%
Bootstrap support for P0CS80 as seed ortholog is 100%.
Bootstrap support for H3G8D5 as seed ortholog is 100%.

Group of orthologs #792. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.ramorum:243

P0CM40              	100.00%		H3GMY0              	100.00%
Bootstrap support for P0CM40 as seed ortholog is 100%.
Bootstrap support for H3GMY0 as seed ortholog is 100%.

Group of orthologs #793. Best score 243 bits
Score difference with first non-orthologous sequence - C.neoformans:243 P.ramorum:243

Q5KM42              	100.00%		H3G8A4              	100.00%
Bootstrap support for Q5KM42 as seed ortholog is 100%.
Bootstrap support for H3G8A4 as seed ortholog is 100%.

Group of orthologs #794. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.ramorum:242

Q5K902              	100.00%		H3GBQ6              	100.00%
Bootstrap support for Q5K902 as seed ortholog is 100%.
Bootstrap support for H3GBQ6 as seed ortholog is 100%.

Group of orthologs #795. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.ramorum:156

Q5KDC2              	100.00%		H3GBF8              	100.00%
Bootstrap support for Q5KDC2 as seed ortholog is 100%.
Bootstrap support for H3GBF8 as seed ortholog is 99%.

Group of orthologs #796. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.ramorum:242

P0CN20              	100.00%		H3GMD4              	100.00%
Bootstrap support for P0CN20 as seed ortholog is 100%.
Bootstrap support for H3GMD4 as seed ortholog is 100%.

Group of orthologs #797. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:146

Q5KKN8              	100.00%		H3GAE9              	100.00%
Bootstrap support for Q5KKN8 as seed ortholog is 99%.
Bootstrap support for H3GAE9 as seed ortholog is 99%.

Group of orthologs #798. Best score 242 bits
Score difference with first non-orthologous sequence - C.neoformans:242 P.ramorum:160

Q5K9S7              	100.00%		H3HCX5              	100.00%
Bootstrap support for Q5K9S7 as seed ortholog is 100%.
Bootstrap support for H3HCX5 as seed ortholog is 100%.

Group of orthologs #799. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:241

Q5K9I8              	100.00%		H3G9U8              	100.00%
                    	       		H3G9U5              	54.89%
Bootstrap support for Q5K9I8 as seed ortholog is 100%.
Bootstrap support for H3G9U8 as seed ortholog is 100%.

Group of orthologs #800. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:105

P0CP86              	100.00%		H3G7R5              	100.00%
Bootstrap support for P0CP86 as seed ortholog is 99%.
Bootstrap support for H3G7R5 as seed ortholog is 100%.

Group of orthologs #801. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:241 P.ramorum:165

Q5KN72              	100.00%		H3G763              	100.00%
Bootstrap support for Q5KN72 as seed ortholog is 100%.
Bootstrap support for H3G763 as seed ortholog is 100%.

Group of orthologs #802. Best score 241 bits
Score difference with first non-orthologous sequence - C.neoformans:241 P.ramorum:241

Q5KMV8              	100.00%		H3GXX6              	100.00%
Bootstrap support for Q5KMV8 as seed ortholog is 100%.
Bootstrap support for H3GXX6 as seed ortholog is 100%.

Group of orthologs #803. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:240

P0CO04              	100.00%		H3G880              	100.00%
Q5KMT3              	46.15%		H3G9N3              	52.00%
Bootstrap support for P0CO04 as seed ortholog is 99%.
Bootstrap support for H3G880 as seed ortholog is 100%.

Group of orthologs #804. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:240 P.ramorum:134

Q5KLY0              	100.00%		H3G7T8              	100.00%
Bootstrap support for Q5KLY0 as seed ortholog is 100%.
Bootstrap support for H3G7T8 as seed ortholog is 99%.

Group of orthologs #805. Best score 240 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:105

Q5K810              	100.00%		H3HDG0              	100.00%
Bootstrap support for Q5K810 as seed ortholog is 100%.
Bootstrap support for H3HDG0 as seed ortholog is 99%.

Group of orthologs #806. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.ramorum:239

Q5KCS1              	100.00%		H3G5N0              	100.00%
Bootstrap support for Q5KCS1 as seed ortholog is 100%.
Bootstrap support for H3G5N0 as seed ortholog is 100%.

Group of orthologs #807. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:239 P.ramorum:81

Q5KCI0              	100.00%		H3G670              	100.00%
Bootstrap support for Q5KCI0 as seed ortholog is 100%.
Bootstrap support for H3G670 as seed ortholog is 99%.

Group of orthologs #808. Best score 239 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.ramorum:239

Q5KDX3              	100.00%		H3GZ56              	100.00%
Bootstrap support for Q5KDX3 as seed ortholog is 99%.
Bootstrap support for H3GZ56 as seed ortholog is 100%.

Group of orthologs #809. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.ramorum:108

P0CO42              	100.00%		H3G9X0              	100.00%
Bootstrap support for P0CO42 as seed ortholog is 100%.
Bootstrap support for H3G9X0 as seed ortholog is 99%.

Group of orthologs #810. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.ramorum:238

Q5K7P6              	100.00%		H3G9N0              	100.00%
Bootstrap support for Q5K7P6 as seed ortholog is 100%.
Bootstrap support for H3G9N0 as seed ortholog is 100%.

Group of orthologs #811. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.ramorum:238

P0CO78              	100.00%		H3GHE9              	100.00%
Bootstrap support for P0CO78 as seed ortholog is 100%.
Bootstrap support for H3GHE9 as seed ortholog is 100%.

Group of orthologs #812. Best score 238 bits
Score difference with first non-orthologous sequence - C.neoformans:238 P.ramorum:238

Q5KJQ8              	100.00%		H3GS31              	100.00%
Bootstrap support for Q5KJQ8 as seed ortholog is 100%.
Bootstrap support for H3GS31 as seed ortholog is 100%.

Group of orthologs #813. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:54

P0CP78              	100.00%		H3GAB0              	100.00%
Bootstrap support for P0CP78 as seed ortholog is 97%.
Bootstrap support for H3GAB0 as seed ortholog is 96%.

Group of orthologs #814. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.ramorum:237

Q5KDH7              	100.00%		H3G8E6              	100.00%
Bootstrap support for Q5KDH7 as seed ortholog is 100%.
Bootstrap support for H3G8E6 as seed ortholog is 100%.

Group of orthologs #815. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.ramorum:237

Q5KD80              	100.00%		H3G9D2              	100.00%
Bootstrap support for Q5KD80 as seed ortholog is 100%.
Bootstrap support for H3G9D2 as seed ortholog is 100%.

Group of orthologs #816. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.ramorum:237

Q5KIJ7              	100.00%		H3GEK8              	100.00%
Bootstrap support for Q5KIJ7 as seed ortholog is 100%.
Bootstrap support for H3GEK8 as seed ortholog is 100%.

Group of orthologs #817. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.ramorum:237

Q5KIY7              	100.00%		H3H0T8              	100.00%
Bootstrap support for Q5KIY7 as seed ortholog is 100%.
Bootstrap support for H3H0T8 as seed ortholog is 100%.

Group of orthologs #818. Best score 237 bits
Score difference with first non-orthologous sequence - C.neoformans:237 P.ramorum:237

Q5KL73              	100.00%		H3H5F6              	100.00%
Bootstrap support for Q5KL73 as seed ortholog is 100%.
Bootstrap support for H3H5F6 as seed ortholog is 100%.

Group of orthologs #819. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.ramorum:236

Q5KIN9              	100.00%		H3G7S5              	100.00%
                    	       		H3G6L1              	95.87%
Bootstrap support for Q5KIN9 as seed ortholog is 100%.
Bootstrap support for H3G7S5 as seed ortholog is 100%.

Group of orthologs #820. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.ramorum:236

Q5KAW7              	100.00%		H3GC81              	100.00%
Bootstrap support for Q5KAW7 as seed ortholog is 100%.
Bootstrap support for H3GC81 as seed ortholog is 100%.

Group of orthologs #821. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.ramorum:236

Q5KFT0              	100.00%		H3G7S0              	100.00%
Bootstrap support for Q5KFT0 as seed ortholog is 100%.
Bootstrap support for H3G7S0 as seed ortholog is 100%.

Group of orthologs #822. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:236

Q5KKM6              	100.00%		H3G7I0              	100.00%
Bootstrap support for Q5KKM6 as seed ortholog is 100%.
Bootstrap support for H3G7I0 as seed ortholog is 100%.

Group of orthologs #823. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.ramorum:236

Q5KN41              	100.00%		H3GWU9              	100.00%
Bootstrap support for Q5KN41 as seed ortholog is 100%.
Bootstrap support for H3GWU9 as seed ortholog is 100%.

Group of orthologs #824. Best score 236 bits
Score difference with first non-orthologous sequence - C.neoformans:236 P.ramorum:236

Q5KJB8              	100.00%		H3H3M7              	100.00%
Bootstrap support for Q5KJB8 as seed ortholog is 100%.
Bootstrap support for H3H3M7 as seed ortholog is 100%.

Group of orthologs #825. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KM74              	31.17%		H3GEW9              	100.00%
Q5K7F9              	100.00%		H3GEX2              	100.00%
Q5KKC8              	18.32%		
Bootstrap support for Q5K7F9 as seed ortholog is 100%.
Bootstrap support for H3GEW9 as seed ortholog is 100%.
Bootstrap support for H3GEX2 as seed ortholog is 100%.

Group of orthologs #826. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KI18              	100.00%		H3H571              	100.00%
                    	       		H3H8R3              	100.00%
Bootstrap support for Q5KI18 as seed ortholog is 100%.
Bootstrap support for H3H571 as seed ortholog is 100%.
Bootstrap support for H3H8R3 as seed ortholog is 100%.

Group of orthologs #827. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:102

Q5KB90              	100.00%		H3HE02              	100.00%
                    	       		H3H001              	65.85%
Bootstrap support for Q5KB90 as seed ortholog is 99%.
Bootstrap support for H3HE02 as seed ortholog is 99%.

Group of orthologs #828. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KBP2              	100.00%		H3G546              	100.00%
Bootstrap support for Q5KBP2 as seed ortholog is 100%.
Bootstrap support for H3G546 as seed ortholog is 100%.

Group of orthologs #829. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:176

Q5K7P7              	100.00%		H3G929              	100.00%
Bootstrap support for Q5K7P7 as seed ortholog is 99%.
Bootstrap support for H3G929 as seed ortholog is 99%.

Group of orthologs #830. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KFD9              	100.00%		H3G5S7              	100.00%
Bootstrap support for Q5KFD9 as seed ortholog is 100%.
Bootstrap support for H3G5S7 as seed ortholog is 100%.

Group of orthologs #831. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KPX1              	100.00%		H3G7J2              	100.00%
Bootstrap support for Q5KPX1 as seed ortholog is 100%.
Bootstrap support for H3G7J2 as seed ortholog is 100%.

Group of orthologs #832. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

P0CM62              	100.00%		H3GUH2              	100.00%
Bootstrap support for P0CM62 as seed ortholog is 100%.
Bootstrap support for H3GUH2 as seed ortholog is 100%.

Group of orthologs #833. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KMJ6              	100.00%		H3GGT2              	100.00%
Bootstrap support for Q5KMJ6 as seed ortholog is 100%.
Bootstrap support for H3GGT2 as seed ortholog is 100%.

Group of orthologs #834. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

P0CR74              	100.00%		H3GY61              	100.00%
Bootstrap support for P0CR74 as seed ortholog is 100%.
Bootstrap support for H3GY61 as seed ortholog is 100%.

Group of orthologs #835. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:114

Q5KP11              	100.00%		H3GM16              	100.00%
Bootstrap support for Q5KP11 as seed ortholog is 72%.
Alternative seed ortholog is Q5K6W6 (142 bits away from this cluster)
Bootstrap support for H3GM16 as seed ortholog is 53%.
Alternative seed ortholog is H3GKN1 (114 bits away from this cluster)

Group of orthologs #836. Best score 235 bits
Score difference with first non-orthologous sequence - C.neoformans:235 P.ramorum:235

Q5KFN7              	100.00%		H3HBA4              	100.00%
Bootstrap support for Q5KFN7 as seed ortholog is 100%.
Bootstrap support for H3HBA4 as seed ortholog is 100%.

Group of orthologs #837. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:23 P.ramorum:6

Q5KB17              	100.00%		H3H4V3              	100.00%
                    	       		H3GVV5              	15.85%
Bootstrap support for Q5KB17 as seed ortholog is 70%.
Alternative seed ortholog is Q5KPY0 (23 bits away from this cluster)
Bootstrap support for H3H4V3 as seed ortholog is 44%.
Alternative seed ortholog is H3G804 (6 bits away from this cluster)

Group of orthologs #838. Best score 234 bits
Score difference with first non-orthologous sequence - C.neoformans:234 P.ramorum:234

Q5KL20              	100.00%		H3HDQ1              	100.00%
Bootstrap support for Q5KL20 as seed ortholog is 100%.
Bootstrap support for H3HDQ1 as seed ortholog is 100%.

Group of orthologs #839. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:233

Q5KKJ1              	100.00%		H3GS12              	100.00%
Q5KCW7              	9.29%		
Bootstrap support for Q5KKJ1 as seed ortholog is 100%.
Bootstrap support for H3GS12 as seed ortholog is 100%.

Group of orthologs #840. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:79

Q5K7H6              	100.00%		H3G8N1              	100.00%
Bootstrap support for Q5K7H6 as seed ortholog is 100%.
Bootstrap support for H3G8N1 as seed ortholog is 99%.

Group of orthologs #841. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:147

Q5KBS2              	100.00%		H3G9C0              	100.00%
Bootstrap support for Q5KBS2 as seed ortholog is 100%.
Bootstrap support for H3G9C0 as seed ortholog is 100%.

Group of orthologs #842. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:150

Q5KH50              	100.00%		H3G955              	100.00%
Bootstrap support for Q5KH50 as seed ortholog is 100%.
Bootstrap support for H3G955 as seed ortholog is 99%.

Group of orthologs #843. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:233

Q5KLE7              	100.00%		H3G8I4              	100.00%
Bootstrap support for Q5KLE7 as seed ortholog is 100%.
Bootstrap support for H3G8I4 as seed ortholog is 100%.

Group of orthologs #844. Best score 233 bits
Score difference with first non-orthologous sequence - C.neoformans:233 P.ramorum:233

Q5KDY7              	100.00%		H3H843              	100.00%
Bootstrap support for Q5KDY7 as seed ortholog is 100%.
Bootstrap support for H3H843 as seed ortholog is 100%.

Group of orthologs #845. Best score 232 bits
Score difference with first non-orthologous sequence - C.neoformans:232 P.ramorum:232

Q5KK81              	100.00%		H3HA42              	100.00%
Bootstrap support for Q5KK81 as seed ortholog is 100%.
Bootstrap support for H3HA42 as seed ortholog is 100%.

Group of orthologs #846. Best score 231 bits
Score difference with first non-orthologous sequence - C.neoformans:231 P.ramorum:68

Q5KFC1              	100.00%		H3H2I8              	100.00%
Bootstrap support for Q5KFC1 as seed ortholog is 100%.
Bootstrap support for H3H2I8 as seed ortholog is 88%.

Group of orthologs #847. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:230

Q5KKZ8              	100.00%		H3G908              	100.00%
Q5KBU8              	15.05%		H3GAS3              	52.89%
Bootstrap support for Q5KKZ8 as seed ortholog is 86%.
Bootstrap support for H3G908 as seed ortholog is 100%.

Group of orthologs #848. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.ramorum:149

P40909              	100.00%		H3G8V5              	100.00%
Bootstrap support for P40909 as seed ortholog is 100%.
Bootstrap support for H3G8V5 as seed ortholog is 100%.

Group of orthologs #849. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:230

Q5K959              	100.00%		H3G962              	100.00%
Bootstrap support for Q5K959 as seed ortholog is 100%.
Bootstrap support for H3G962 as seed ortholog is 100%.

Group of orthologs #850. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.ramorum:230

Q5KA19              	100.00%		H3G8C7              	100.00%
Bootstrap support for Q5KA19 as seed ortholog is 100%.
Bootstrap support for H3G8C7 as seed ortholog is 100%.

Group of orthologs #851. Best score 230 bits
Score difference with first non-orthologous sequence - C.neoformans:230 P.ramorum:64

Q5KBS3              	100.00%		H3G7G0              	100.00%
Bootstrap support for Q5KBS3 as seed ortholog is 100%.
Bootstrap support for H3G7G0 as seed ortholog is 98%.

Group of orthologs #852. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.ramorum:74

P0CS76              	100.00%		H3G7M1              	100.00%
Bootstrap support for P0CS76 as seed ortholog is 77%.
Bootstrap support for H3G7M1 as seed ortholog is 95%.

Group of orthologs #853. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.ramorum:229

Q5KB80              	100.00%		H3GFJ9              	100.00%
Bootstrap support for Q5KB80 as seed ortholog is 100%.
Bootstrap support for H3GFJ9 as seed ortholog is 100%.

Group of orthologs #854. Best score 229 bits
Score difference with first non-orthologous sequence - C.neoformans:229 P.ramorum:229

Q5KFT1              	100.00%		H3GV85              	100.00%
Bootstrap support for Q5KFT1 as seed ortholog is 100%.
Bootstrap support for H3GV85 as seed ortholog is 100%.

Group of orthologs #855. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:91

Q5KGF6              	100.00%		H3GRU7              	100.00%
Q5K9H6              	12.97%		H3G534              	24.93%
Bootstrap support for Q5KGF6 as seed ortholog is 100%.
Bootstrap support for H3GRU7 as seed ortholog is 96%.

Group of orthologs #856. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:99

Q5KJG5              	100.00%		H3GC39              	100.00%
                    	       		H3GWQ9              	95.07%
Bootstrap support for Q5KJG5 as seed ortholog is 95%.
Bootstrap support for H3GC39 as seed ortholog is 98%.

Group of orthologs #857. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:228

P0CO32              	100.00%		H3GUZ7              	100.00%
                    	       		H3GHT8              	7.12%
Bootstrap support for P0CO32 as seed ortholog is 100%.
Bootstrap support for H3GUZ7 as seed ortholog is 100%.

Group of orthologs #858. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:228

Q5K8G6              	100.00%		H3G8P0              	100.00%
Bootstrap support for Q5K8G6 as seed ortholog is 100%.
Bootstrap support for H3G8P0 as seed ortholog is 100%.

Group of orthologs #859. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:228

Q5KBW9              	100.00%		H3G5G6              	100.00%
Bootstrap support for Q5KBW9 as seed ortholog is 100%.
Bootstrap support for H3G5G6 as seed ortholog is 100%.

Group of orthologs #860. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:165

Q5K6V6              	100.00%		H3GAI3              	100.00%
Bootstrap support for Q5K6V6 as seed ortholog is 100%.
Bootstrap support for H3GAI3 as seed ortholog is 100%.

Group of orthologs #861. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:158

Q5KMX1              	100.00%		H3G6Y5              	100.00%
Bootstrap support for Q5KMX1 as seed ortholog is 100%.
Bootstrap support for H3G6Y5 as seed ortholog is 99%.

Group of orthologs #862. Best score 228 bits
Score difference with first non-orthologous sequence - C.neoformans:228 P.ramorum:228

Q5K776              	100.00%		H3GNT4              	100.00%
Bootstrap support for Q5K776 as seed ortholog is 100%.
Bootstrap support for H3GNT4 as seed ortholog is 100%.

Group of orthologs #863. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.ramorum:227

Q5KJ40              	100.00%		H3G913              	100.00%
Bootstrap support for Q5KJ40 as seed ortholog is 100%.
Bootstrap support for H3G913 as seed ortholog is 100%.

Group of orthologs #864. Best score 227 bits
Score difference with first non-orthologous sequence - C.neoformans:227 P.ramorum:227

Q5KP99              	100.00%		H3G916              	100.00%
Bootstrap support for Q5KP99 as seed ortholog is 100%.
Bootstrap support for H3G916 as seed ortholog is 100%.

Group of orthologs #865. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.ramorum:226

Q5K7E6              	100.00%		H3GFF0              	100.00%
Bootstrap support for Q5K7E6 as seed ortholog is 100%.
Bootstrap support for H3GFF0 as seed ortholog is 100%.

Group of orthologs #866. Best score 226 bits
Score difference with first non-orthologous sequence - C.neoformans:226 P.ramorum:226

Q5KNZ4              	100.00%		H3G9E5              	100.00%
Bootstrap support for Q5KNZ4 as seed ortholog is 100%.
Bootstrap support for H3G9E5 as seed ortholog is 100%.

Group of orthologs #867. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:50

Q5K7G0              	18.30%		H3GAV3              	100.00%
Q5KM76              	100.00%		H3H4C4              	100.00%
Q5K6S8              	100.00%		H3GCR6              	100.00%
Q5KCC5              	86.41%		H3H7B4              	83.06%
Q5KA16              	85.52%		H3G977              	79.14%
Q5KMZ2              	21.16%		H3H5U5              	76.99%
Q5KC79              	15.92%		H3H3Z9              	76.11%
Q5KD28              	12.25%		H3GTA9              	67.13%
Q5KGQ4              	12.03%		H3GTC2              	66.12%
Q5KKB7              	11.69%		H3GTC3              	64.48%
Q5K8W0              	11.58%		
Q5K7D3              	8.93%		
Q5K996              	7.13%		
Q5KE75              	5.25%		
Bootstrap support for Q5KM76 as seed ortholog is 88%.
Bootstrap support for Q5K6S8 as seed ortholog is 82%.
Bootstrap support for H3GAV3 as seed ortholog is 84%.
Bootstrap support for H3H4C4 as seed ortholog is 84%.
Bootstrap support for H3GCR6 as seed ortholog is 75%.

Group of orthologs #868. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.ramorum:41

Q5KAZ9              	100.00%		H3GMC7              	100.00%
                    	       		H3G4Z5              	6.21%
Bootstrap support for Q5KAZ9 as seed ortholog is 87%.
Bootstrap support for H3GMC7 as seed ortholog is 85%.

Group of orthologs #869. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.ramorum:225

P0CR18              	100.00%		H3GAS4              	100.00%
Bootstrap support for P0CR18 as seed ortholog is 100%.
Bootstrap support for H3GAS4 as seed ortholog is 100%.

Group of orthologs #870. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.ramorum:225

Q5K7Z7              	100.00%		H3GC34              	100.00%
Bootstrap support for Q5K7Z7 as seed ortholog is 100%.
Bootstrap support for H3GC34 as seed ortholog is 100%.

Group of orthologs #871. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.ramorum:225

Q5KLA2              	100.00%		H3GAK1              	100.00%
Bootstrap support for Q5KLA2 as seed ortholog is 100%.
Bootstrap support for H3GAK1 as seed ortholog is 100%.

Group of orthologs #872. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:225 P.ramorum:225

Q5KFQ5              	100.00%		H3GNT1              	100.00%
Bootstrap support for Q5KFQ5 as seed ortholog is 100%.
Bootstrap support for H3GNT1 as seed ortholog is 100%.

Group of orthologs #873. Best score 225 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.ramorum:225

Q5KEX7              	100.00%		H3GY76              	100.00%
Bootstrap support for Q5KEX7 as seed ortholog is 77%.
Bootstrap support for H3GY76 as seed ortholog is 100%.

Group of orthologs #874. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:224

Q5KE88              	100.00%		H3G701              	100.00%
                    	       		H3GSV1              	77.90%
Bootstrap support for Q5KE88 as seed ortholog is 98%.
Bootstrap support for H3G701 as seed ortholog is 100%.

Group of orthologs #875. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:224

P0CR50              	100.00%		H3G715              	100.00%
Bootstrap support for P0CR50 as seed ortholog is 100%.
Bootstrap support for H3G715 as seed ortholog is 100%.

Group of orthologs #876. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:224

Q5K8U2              	100.00%		H3GH86              	100.00%
Bootstrap support for Q5K8U2 as seed ortholog is 100%.
Bootstrap support for H3GH86 as seed ortholog is 100%.

Group of orthologs #877. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:224

Q5KH61              	100.00%		H3GBV9              	100.00%
Bootstrap support for Q5KH61 as seed ortholog is 100%.
Bootstrap support for H3GBV9 as seed ortholog is 100%.

Group of orthologs #878. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:28

Q5KI33              	100.00%		H3GBJ0              	100.00%
Bootstrap support for Q5KI33 as seed ortholog is 100%.
Bootstrap support for H3GBJ0 as seed ortholog is 74%.
Alternative seed ortholog is H3GL72 (28 bits away from this cluster)

Group of orthologs #879. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:224

Q5KJZ3              	100.00%		H3GHG7              	100.00%
Bootstrap support for Q5KJZ3 as seed ortholog is 100%.
Bootstrap support for H3GHG7 as seed ortholog is 100%.

Group of orthologs #880. Best score 224 bits
Score difference with first non-orthologous sequence - C.neoformans:224 P.ramorum:224

Q5KDF6              	100.00%		H3GNL2              	100.00%
Bootstrap support for Q5KDF6 as seed ortholog is 100%.
Bootstrap support for H3GNL2 as seed ortholog is 100%.

Group of orthologs #881. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:223

Q5KP78              	100.00%		H3GUW0              	100.00%
Q5KP94              	40.94%		
Bootstrap support for Q5KP78 as seed ortholog is 100%.
Bootstrap support for H3GUW0 as seed ortholog is 100%.

Group of orthologs #882. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:223

Q5KIJ0              	100.00%		H3G9F0              	100.00%
Bootstrap support for Q5KIJ0 as seed ortholog is 100%.
Bootstrap support for H3G9F0 as seed ortholog is 100%.

Group of orthologs #883. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:223

Q5KGI2              	100.00%		H3GWT2              	100.00%
Bootstrap support for Q5KGI2 as seed ortholog is 100%.
Bootstrap support for H3GWT2 as seed ortholog is 100%.

Group of orthologs #884. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:223

Q5KMT0              	100.00%		H3GTI2              	100.00%
Bootstrap support for Q5KMT0 as seed ortholog is 100%.
Bootstrap support for H3GTI2 as seed ortholog is 100%.

Group of orthologs #885. Best score 223 bits
Score difference with first non-orthologous sequence - C.neoformans:223 P.ramorum:223

Q5KQ79              	100.00%		H3HED1              	100.00%
Bootstrap support for Q5KQ79 as seed ortholog is 100%.
Bootstrap support for H3HED1 as seed ortholog is 100%.

Group of orthologs #886. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:222 P.ramorum:222

Q5K850              	100.00%		H3G702              	100.00%
Bootstrap support for Q5K850 as seed ortholog is 100%.
Bootstrap support for H3G702 as seed ortholog is 100%.

Group of orthologs #887. Best score 222 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:93

Q5KGE7              	100.00%		H3G9K8              	100.00%
Bootstrap support for Q5KGE7 as seed ortholog is 99%.
Bootstrap support for H3G9K8 as seed ortholog is 100%.

Group of orthologs #888. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.ramorum:111

Q5KEK2              	100.00%		H3G945              	100.00%
Bootstrap support for Q5KEK2 as seed ortholog is 99%.
Bootstrap support for H3G945 as seed ortholog is 99%.

Group of orthologs #889. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.ramorum:221

Q5KGU5              	100.00%		H3GII1              	100.00%
Bootstrap support for Q5KGU5 as seed ortholog is 100%.
Bootstrap support for H3GII1 as seed ortholog is 100%.

Group of orthologs #890. Best score 221 bits
Score difference with first non-orthologous sequence - C.neoformans:221 P.ramorum:221

Q5KPC1              	100.00%		H3GT71              	100.00%
Bootstrap support for Q5KPC1 as seed ortholog is 100%.
Bootstrap support for H3GT71 as seed ortholog is 100%.

Group of orthologs #891. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:141

Q5KIM7              	100.00%		H3GTP5              	100.00%
                    	       		H3GTQ0              	69.30%
                    	       		H3H818              	59.88%
                    	       		H3H3J2              	31.00%
Bootstrap support for Q5KIM7 as seed ortholog is 99%.
Bootstrap support for H3GTP5 as seed ortholog is 99%.

Group of orthologs #892. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.ramorum:220

Q5KN57              	100.00%		H3GV33              	100.00%
                    	       		H3GV30              	69.93%
Bootstrap support for Q5KN57 as seed ortholog is 37%.
Alternative seed ortholog is Q5KEE8 (12 bits away from this cluster)
Bootstrap support for H3GV33 as seed ortholog is 100%.

Group of orthologs #893. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:113

P0CS16              	100.00%		H3G8P2              	100.00%
Bootstrap support for P0CS16 as seed ortholog is 99%.
Bootstrap support for H3G8P2 as seed ortholog is 100%.

Group of orthologs #894. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.ramorum:220

Q5K9W9              	100.00%		H3G7C2              	100.00%
Bootstrap support for Q5K9W9 as seed ortholog is 100%.
Bootstrap support for H3G7C2 as seed ortholog is 100%.

Group of orthologs #895. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:117

Q5KKH7              	100.00%		H3G7P2              	100.00%
Bootstrap support for Q5KKH7 as seed ortholog is 99%.
Bootstrap support for H3G7P2 as seed ortholog is 99%.

Group of orthologs #896. Best score 220 bits
Score difference with first non-orthologous sequence - C.neoformans:220 P.ramorum:220

Q5KP95              	100.00%		H3G9F9              	100.00%
Bootstrap support for Q5KP95 as seed ortholog is 100%.
Bootstrap support for H3G9F9 as seed ortholog is 100%.

Group of orthologs #897. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.ramorum:219

Q5K894              	100.00%		H3H082              	100.00%
Bootstrap support for Q5K894 as seed ortholog is 100%.
Bootstrap support for H3H082 as seed ortholog is 100%.

Group of orthologs #898. Best score 219 bits
Score difference with first non-orthologous sequence - C.neoformans:219 P.ramorum:148

Q5KNX4              	100.00%		H3HBK4              	100.00%
Bootstrap support for Q5KNX4 as seed ortholog is 100%.
Bootstrap support for H3HBK4 as seed ortholog is 99%.

Group of orthologs #899. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:218 P.ramorum:110

Q5K918              	100.00%		H3G582              	100.00%
Q5K7Y0              	100.00%		H3G579              	100.00%
                    	       		H3H2J9              	66.53%
                    	       		H3H2L1              	52.29%
Bootstrap support for Q5K918 as seed ortholog is 100%.
Bootstrap support for Q5K7Y0 as seed ortholog is 100%.
Bootstrap support for H3G582 as seed ortholog is 97%.
Bootstrap support for H3G579 as seed ortholog is 93%.

Group of orthologs #900. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:34 P.ramorum:218

Q5K8C5              	100.00%		H3G9U3              	100.00%
                    	       		H3G9U6              	56.55%
                    	       		H3GME0              	36.01%
Bootstrap support for Q5K8C5 as seed ortholog is 83%.
Bootstrap support for H3G9U3 as seed ortholog is 100%.

Group of orthologs #901. Best score 218 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.ramorum:89

Q5KDT8              	100.00%		H3GBX3              	100.00%
Bootstrap support for Q5KDT8 as seed ortholog is 100%.
Bootstrap support for H3GBX3 as seed ortholog is 99%.

Group of orthologs #902. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:113

Q5KDR7              	100.00%		H3GCD2              	100.00%
Bootstrap support for Q5KDR7 as seed ortholog is 99%.
Bootstrap support for H3GCD2 as seed ortholog is 99%.

Group of orthologs #903. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.ramorum:217

Q5KK16              	100.00%		H3GI54              	100.00%
Bootstrap support for Q5KK16 as seed ortholog is 100%.
Bootstrap support for H3GI54 as seed ortholog is 100%.

Group of orthologs #904. Best score 217 bits
Score difference with first non-orthologous sequence - C.neoformans:217 P.ramorum:217

Q5KF16              	100.00%		H3GT40              	100.00%
Bootstrap support for Q5KF16 as seed ortholog is 100%.
Bootstrap support for H3GT40 as seed ortholog is 100%.

Group of orthologs #905. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.ramorum:41

Q5KMM0              	100.00%		H3G8M8              	100.00%
Q5KML4              	50.98%		H3G772              	38.30%
                    	       		H3G525              	14.18%
Bootstrap support for Q5KMM0 as seed ortholog is 88%.
Bootstrap support for H3G8M8 as seed ortholog is 95%.

Group of orthologs #906. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:40

P0CP82              	100.00%		H3G8K4              	100.00%
Bootstrap support for P0CP82 as seed ortholog is 99%.
Bootstrap support for H3G8K4 as seed ortholog is 94%.

Group of orthologs #907. Best score 216 bits
Score difference with first non-orthologous sequence - C.neoformans:216 P.ramorum:216

Q5KLE6              	100.00%		H3G8T4              	100.00%
Bootstrap support for Q5KLE6 as seed ortholog is 100%.
Bootstrap support for H3G8T4 as seed ortholog is 100%.

Group of orthologs #908. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5KLV9              	100.00%		H3G9D8              	100.00%
Bootstrap support for Q5KLV9 as seed ortholog is 100%.
Bootstrap support for H3G9D8 as seed ortholog is 100%.

Group of orthologs #909. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5KCK3              	100.00%		H3GK58              	100.00%
Bootstrap support for Q5KCK3 as seed ortholog is 100%.
Bootstrap support for H3GK58 as seed ortholog is 100%.

Group of orthologs #910. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5K936              	100.00%		H3GU32              	100.00%
Bootstrap support for Q5K936 as seed ortholog is 100%.
Bootstrap support for H3GU32 as seed ortholog is 100%.

Group of orthologs #911. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5KHF9              	100.00%		H3GPI8              	100.00%
Bootstrap support for Q5KHF9 as seed ortholog is 100%.
Bootstrap support for H3GPI8 as seed ortholog is 100%.

Group of orthologs #912. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5KLE3              	100.00%		H3GM34              	100.00%
Bootstrap support for Q5KLE3 as seed ortholog is 100%.
Bootstrap support for H3GM34 as seed ortholog is 100%.

Group of orthologs #913. Best score 215 bits
Score difference with first non-orthologous sequence - C.neoformans:215 P.ramorum:215

Q5KP07              	100.00%		H3GZU7              	100.00%
Bootstrap support for Q5KP07 as seed ortholog is 100%.
Bootstrap support for H3GZU7 as seed ortholog is 100%.

Group of orthologs #914. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.ramorum:131

Q5K760              	100.00%		H3GX82              	100.00%
                    	       		H3GGA5              	16.76%
Bootstrap support for Q5K760 as seed ortholog is 100%.
Bootstrap support for H3GX82 as seed ortholog is 99%.

Group of orthologs #915. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.ramorum:214

Q5K7Y2              	100.00%		H3G9U4              	100.00%
Bootstrap support for Q5K7Y2 as seed ortholog is 100%.
Bootstrap support for H3G9U4 as seed ortholog is 100%.

Group of orthologs #916. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:42

Q5KCQ7              	100.00%		H3G969              	100.00%
Bootstrap support for Q5KCQ7 as seed ortholog is 97%.
Bootstrap support for H3G969 as seed ortholog is 94%.

Group of orthologs #917. Best score 214 bits
Score difference with first non-orthologous sequence - C.neoformans:214 P.ramorum:214

Q5KIP3              	100.00%		H3GZX6              	100.00%
Bootstrap support for Q5KIP3 as seed ortholog is 100%.
Bootstrap support for H3GZX6 as seed ortholog is 100%.

Group of orthologs #918. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.ramorum:70

Q5K9P5              	100.00%		H3G8B5              	100.00%
Bootstrap support for Q5K9P5 as seed ortholog is 100%.
Bootstrap support for H3G8B5 as seed ortholog is 96%.

Group of orthologs #919. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:146

Q5KAU2              	100.00%		H3G861              	100.00%
Bootstrap support for Q5KAU2 as seed ortholog is 99%.
Bootstrap support for H3G861 as seed ortholog is 100%.

Group of orthologs #920. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.ramorum:213

Q5K7E0              	100.00%		H3GE42              	100.00%
Bootstrap support for Q5K7E0 as seed ortholog is 100%.
Bootstrap support for H3GE42 as seed ortholog is 100%.

Group of orthologs #921. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.ramorum:213

P0CM34              	100.00%		H3GPC6              	100.00%
Bootstrap support for P0CM34 as seed ortholog is 100%.
Bootstrap support for H3GPC6 as seed ortholog is 100%.

Group of orthologs #922. Best score 213 bits
Score difference with first non-orthologous sequence - C.neoformans:213 P.ramorum:213

Q5KML5              	100.00%		H3GJY6              	100.00%
Bootstrap support for Q5KML5 as seed ortholog is 100%.
Bootstrap support for H3GJY6 as seed ortholog is 100%.

Group of orthologs #923. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.ramorum:29

Q5KGR6              	100.00%		H3G8V0              	100.00%
Bootstrap support for Q5KGR6 as seed ortholog is 100%.
Bootstrap support for H3G8V0 as seed ortholog is 91%.

Group of orthologs #924. Best score 212 bits
Score difference with first non-orthologous sequence - C.neoformans:212 P.ramorum:212

Q5K8X8              	100.00%		H3GRP6              	100.00%
Bootstrap support for Q5K8X8 as seed ortholog is 100%.
Bootstrap support for H3GRP6 as seed ortholog is 100%.

Group of orthologs #925. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.ramorum:28

Q5KEY0              	100.00%		H3H724              	100.00%
                    	       		H3GR30              	60.71%
                    	       		H3GC03              	59.74%
                    	       		H3GLB4              	54.51%
Bootstrap support for Q5KEY0 as seed ortholog is 100%.
Bootstrap support for H3H724 as seed ortholog is 99%.

Group of orthologs #926. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.ramorum:211

Q5KDD6              	100.00%		H3GU44              	100.00%
Bootstrap support for Q5KDD6 as seed ortholog is 100%.
Bootstrap support for H3GU44 as seed ortholog is 100%.

Group of orthologs #927. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:211 P.ramorum:97

Q5KPM4              	100.00%		H3GIS2              	100.00%
Bootstrap support for Q5KPM4 as seed ortholog is 100%.
Bootstrap support for H3GIS2 as seed ortholog is 98%.

Group of orthologs #928. Best score 211 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.ramorum:211

Q5KGQ3              	100.00%		H3GWR1              	100.00%
Bootstrap support for Q5KGQ3 as seed ortholog is 85%.
Bootstrap support for H3GWR1 as seed ortholog is 100%.

Group of orthologs #929. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.ramorum:129

Q5KEA0              	100.00%		H3GSN0              	100.00%
Q5KE99              	37.03%		H3GSN1              	61.78%
                    	       		H3GSN9              	52.23%
                    	       		H3GSM9              	50.49%
                    	       		H3GSN3              	50.49%
Bootstrap support for Q5KEA0 as seed ortholog is 100%.
Bootstrap support for H3GSN0 as seed ortholog is 99%.

Group of orthologs #930. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.ramorum:9

Q5K871              	100.00%		H3H1K1              	100.00%
                    	       		H3H1K3              	46.50%
Bootstrap support for Q5K871 as seed ortholog is 100%.
Bootstrap support for H3H1K1 as seed ortholog is 66%.
Alternative seed ortholog is H3GV25 (9 bits away from this cluster)

Group of orthologs #931. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.ramorum:210

Q5KQ17              	100.00%		H3G9T8              	100.00%
Bootstrap support for Q5KQ17 as seed ortholog is 100%.
Bootstrap support for H3G9T8 as seed ortholog is 100%.

Group of orthologs #932. Best score 210 bits
Score difference with first non-orthologous sequence - C.neoformans:210 P.ramorum:210

Q5KLM3              	100.00%		H3GE73              	100.00%
Bootstrap support for Q5KLM3 as seed ortholog is 100%.
Bootstrap support for H3GE73 as seed ortholog is 100%.

Group of orthologs #933. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.ramorum:114

Q5KI12              	100.00%		H3GD00              	100.00%
Bootstrap support for Q5KI12 as seed ortholog is 100%.
Bootstrap support for H3GD00 as seed ortholog is 72%.
Alternative seed ortholog is H3G9R7 (114 bits away from this cluster)

Group of orthologs #934. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:209 P.ramorum:209

Q5KDH9              	100.00%		H3GIY8              	100.00%
Bootstrap support for Q5KDH9 as seed ortholog is 100%.
Bootstrap support for H3GIY8 as seed ortholog is 100%.

Group of orthologs #935. Best score 209 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.ramorum:55

Q5K9E2              	100.00%		H3GMU5              	100.00%
Bootstrap support for Q5K9E2 as seed ortholog is 99%.
Bootstrap support for H3GMU5 as seed ortholog is 93%.

Group of orthologs #936. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:58

Q5KJH5              	100.00%		H3GDW0              	100.00%
Bootstrap support for Q5KJH5 as seed ortholog is 94%.
Bootstrap support for H3GDW0 as seed ortholog is 95%.

Group of orthologs #937. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.ramorum:208

Q5KQ30              	100.00%		H3GVG8              	100.00%
Bootstrap support for Q5KQ30 as seed ortholog is 100%.
Bootstrap support for H3GVG8 as seed ortholog is 100%.

Group of orthologs #938. Best score 208 bits
Score difference with first non-orthologous sequence - C.neoformans:208 P.ramorum:49

Q5KNS1              	100.00%		H3HCM2              	100.00%
Bootstrap support for Q5KNS1 as seed ortholog is 100%.
Bootstrap support for H3HCM2 as seed ortholog is 91%.

Group of orthologs #939. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:61

Q5KCA7              	100.00%		H3GVG2              	100.00%
Q5KG19              	16.03%		H3GD31              	16.39%
                    	       		H3GD28              	14.95%
                    	       		H3GD38              	13.01%
                    	       		H3GD30              	12.94%
Bootstrap support for Q5KCA7 as seed ortholog is 100%.
Bootstrap support for H3GVG2 as seed ortholog is 88%.

Group of orthologs #940. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:163

Q5KAX9              	100.00%		H3GSN2              	100.00%
Q5K7H5              	51.45%		
Q5KJQ6              	42.56%		
Bootstrap support for Q5KAX9 as seed ortholog is 100%.
Bootstrap support for H3GSN2 as seed ortholog is 99%.

Group of orthologs #941. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:207

Q5KGD2              	100.00%		H3G840              	100.00%
Q5KID2              	19.68%		
Bootstrap support for Q5KGD2 as seed ortholog is 99%.
Bootstrap support for H3G840 as seed ortholog is 100%.

Group of orthologs #942. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:207

Q5K7I5              	100.00%		H3G8D4              	100.00%
Bootstrap support for Q5K7I5 as seed ortholog is 100%.
Bootstrap support for H3G8D4 as seed ortholog is 100%.

Group of orthologs #943. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:207

Q5KBT6              	100.00%		H3G5Y3              	100.00%
Bootstrap support for Q5KBT6 as seed ortholog is 100%.
Bootstrap support for H3G5Y3 as seed ortholog is 100%.

Group of orthologs #944. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:207

Q5KAB6              	100.00%		H3GAL1              	100.00%
Bootstrap support for Q5KAB6 as seed ortholog is 99%.
Bootstrap support for H3GAL1 as seed ortholog is 100%.

Group of orthologs #945. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:207

Q5KIG4              	100.00%		H3G8T9              	100.00%
Bootstrap support for Q5KIG4 as seed ortholog is 100%.
Bootstrap support for H3G8T9 as seed ortholog is 100%.

Group of orthologs #946. Best score 207 bits
Score difference with first non-orthologous sequence - C.neoformans:207 P.ramorum:207

Q5KPS9              	100.00%		H3GTZ8              	100.00%
Bootstrap support for Q5KPS9 as seed ortholog is 100%.
Bootstrap support for H3GTZ8 as seed ortholog is 100%.

Group of orthologs #947. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.ramorum:132

Q5KBK7              	100.00%		H3G5G1              	100.00%
Bootstrap support for Q5KBK7 as seed ortholog is 100%.
Bootstrap support for H3G5G1 as seed ortholog is 100%.

Group of orthologs #948. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.ramorum:136

Q5K8Q5              	100.00%		H3G9W3              	100.00%
Bootstrap support for Q5K8Q5 as seed ortholog is 100%.
Bootstrap support for H3G9W3 as seed ortholog is 100%.

Group of orthologs #949. Best score 206 bits
Score difference with first non-orthologous sequence - C.neoformans:206 P.ramorum:206

Q5KJC9              	100.00%		H3G9L4              	100.00%
Bootstrap support for Q5KJC9 as seed ortholog is 100%.
Bootstrap support for H3G9L4 as seed ortholog is 100%.

Group of orthologs #950. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:205

Q5KGJ6              	100.00%		H3G5L7              	100.00%
Bootstrap support for Q5KGJ6 as seed ortholog is 100%.
Bootstrap support for H3G5L7 as seed ortholog is 100%.

Group of orthologs #951. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:205

Q5KIF8              	100.00%		H3GAD8              	100.00%
Bootstrap support for Q5KIF8 as seed ortholog is 100%.
Bootstrap support for H3GAD8 as seed ortholog is 100%.

Group of orthologs #952. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:205

Q5KBY9              	100.00%		H3GTQ7              	100.00%
Bootstrap support for Q5KBY9 as seed ortholog is 100%.
Bootstrap support for H3GTQ7 as seed ortholog is 100%.

Group of orthologs #953. Best score 205 bits
Score difference with first non-orthologous sequence - C.neoformans:205 P.ramorum:205

Q5KJU1              	100.00%		H3GM70              	100.00%
Bootstrap support for Q5KJU1 as seed ortholog is 100%.
Bootstrap support for H3GM70 as seed ortholog is 100%.

Group of orthologs #954. Best score 204 bits
Score difference with first non-orthologous sequence - C.neoformans:204 P.ramorum:204

Q5KK68              	100.00%		H3GQD5              	100.00%
Bootstrap support for Q5KK68 as seed ortholog is 100%.
Bootstrap support for H3GQD5 as seed ortholog is 100%.

Group of orthologs #955. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.ramorum:203

Q5KLR3              	100.00%		H3G7I8              	100.00%
Q5KLS4              	21.96%		H3HDF4              	65.15%
                    	       		H3GA24              	58.59%
                    	       		H3GA25              	57.58%
                    	       		H3GW69              	57.07%
                    	       		H3GA56              	51.01%
                    	       		H3GA54              	34.85%
                    	       		H3GB09              	32.32%
                    	       		H3GX51              	25.25%
Bootstrap support for Q5KLR3 as seed ortholog is 100%.
Bootstrap support for H3G7I8 as seed ortholog is 100%.

Group of orthologs #956. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.ramorum:92

P0CQ42              	100.00%		H3GA69              	100.00%
Bootstrap support for P0CQ42 as seed ortholog is 79%.
Bootstrap support for H3GA69 as seed ortholog is 99%.

Group of orthologs #957. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.ramorum:141

Q5KNK4              	100.00%		H3GS65              	100.00%
Bootstrap support for Q5KNK4 as seed ortholog is 100%.
Bootstrap support for H3GS65 as seed ortholog is 99%.

Group of orthologs #958. Best score 203 bits
Score difference with first non-orthologous sequence - C.neoformans:203 P.ramorum:163

Q5KGP0              	100.00%		H3GYM5              	100.00%
Bootstrap support for Q5KGP0 as seed ortholog is 100%.
Bootstrap support for H3GYM5 as seed ortholog is 100%.

Group of orthologs #959. Best score 202 bits
Score difference with first non-orthologous sequence - C.neoformans:202 P.ramorum:202

P0CS40              	100.00%		H3GFI2              	100.00%
Bootstrap support for P0CS40 as seed ortholog is 100%.
Bootstrap support for H3GFI2 as seed ortholog is 100%.

Group of orthologs #960. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:201

Q5K8R7              	100.00%		H3GG45              	100.00%
Bootstrap support for Q5K8R7 as seed ortholog is 100%.
Bootstrap support for H3GG45 as seed ortholog is 100%.

Group of orthologs #961. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:201

Q5KJ55              	100.00%		H3G7U0              	100.00%
Bootstrap support for Q5KJ55 as seed ortholog is 100%.
Bootstrap support for H3G7U0 as seed ortholog is 100%.

Group of orthologs #962. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:201

Q5KII0              	100.00%		H3GD17              	100.00%
Bootstrap support for Q5KII0 as seed ortholog is 100%.
Bootstrap support for H3GD17 as seed ortholog is 100%.

Group of orthologs #963. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:201

Q5K8H7              	100.00%		H3GTM3              	100.00%
Bootstrap support for Q5K8H7 as seed ortholog is 100%.
Bootstrap support for H3GTM3 as seed ortholog is 100%.

Group of orthologs #964. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:201

Q5KP79              	100.00%		H3GEK5              	100.00%
Bootstrap support for Q5KP79 as seed ortholog is 100%.
Bootstrap support for H3GEK5 as seed ortholog is 100%.

Group of orthologs #965. Best score 201 bits
Score difference with first non-orthologous sequence - C.neoformans:201 P.ramorum:62

Q5KP27              	100.00%		H3GI39              	100.00%
Bootstrap support for Q5KP27 as seed ortholog is 100%.
Bootstrap support for H3GI39 as seed ortholog is 88%.

Group of orthologs #966. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:157

Q5KEB3              	100.00%		H3G9V3              	100.00%
                    	       		H3G9V4              	100.00%
                    	       		H3GB90              	100.00%
                    	       		H3G661              	88.73%
                    	       		H3GB95              	58.33%
                    	       		H3G9V0              	48.53%
Bootstrap support for Q5KEB3 as seed ortholog is 100%.
Bootstrap support for H3G9V3 as seed ortholog is 100%.
Bootstrap support for H3G9V4 as seed ortholog is 100%.
Bootstrap support for H3GB90 as seed ortholog is 100%.

Group of orthologs #967. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:75

Q5KLR5              	100.00%		H3G745              	100.00%
Q5K808              	27.78%		
Bootstrap support for Q5KLR5 as seed ortholog is 100%.
Bootstrap support for H3G745 as seed ortholog is 97%.

Group of orthologs #968. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:200

Q5K8H5              	100.00%		H3G9Z5              	100.00%
Bootstrap support for Q5K8H5 as seed ortholog is 100%.
Bootstrap support for H3G9Z5 as seed ortholog is 100%.

Group of orthologs #969. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:133

Q5KEZ0              	100.00%		H3G7B7              	100.00%
Bootstrap support for Q5KEZ0 as seed ortholog is 100%.
Bootstrap support for H3G7B7 as seed ortholog is 99%.

Group of orthologs #970. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:200

Q5KNF9              	100.00%		H3G7N8              	100.00%
Bootstrap support for Q5KNF9 as seed ortholog is 100%.
Bootstrap support for H3G7N8 as seed ortholog is 100%.

Group of orthologs #971. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:200

Q5KNB0              	100.00%		H3G8C5              	100.00%
Bootstrap support for Q5KNB0 as seed ortholog is 100%.
Bootstrap support for H3G8C5 as seed ortholog is 100%.

Group of orthologs #972. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:200 P.ramorum:79

Q5K6X5              	100.00%		H3HDF6              	100.00%
Bootstrap support for Q5K6X5 as seed ortholog is 100%.
Bootstrap support for H3HDF6 as seed ortholog is 93%.

Group of orthologs #973. Best score 200 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:200

Q5KPM3              	100.00%		H3H3D6              	100.00%
Bootstrap support for Q5KPM3 as seed ortholog is 76%.
Bootstrap support for H3H3D6 as seed ortholog is 100%.

Group of orthologs #974. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.ramorum:199

Q5KBI5              	100.00%		H3G9F5              	100.00%
Bootstrap support for Q5KBI5 as seed ortholog is 67%.
Alternative seed ortholog is Q5KDE2 (20 bits away from this cluster)
Bootstrap support for H3G9F5 as seed ortholog is 100%.

Group of orthologs #975. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.ramorum:199

Q5K8A1              	100.00%		H3GEU2              	100.00%
Bootstrap support for Q5K8A1 as seed ortholog is 100%.
Bootstrap support for H3GEU2 as seed ortholog is 100%.

Group of orthologs #976. Best score 199 bits
Score difference with first non-orthologous sequence - C.neoformans:199 P.ramorum:81

Q5KN42              	100.00%		H3H461              	100.00%
Bootstrap support for Q5KN42 as seed ortholog is 100%.
Bootstrap support for H3H461 as seed ortholog is 98%.

Group of orthologs #977. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.ramorum:198

Q5K9K4              	100.00%		H3G4Z2              	100.00%
Bootstrap support for Q5K9K4 as seed ortholog is 100%.
Bootstrap support for H3G4Z2 as seed ortholog is 100%.

Group of orthologs #978. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.ramorum:198

Q5KP19              	100.00%		H3G8P7              	100.00%
Bootstrap support for Q5KP19 as seed ortholog is 100%.
Bootstrap support for H3G8P7 as seed ortholog is 100%.

Group of orthologs #979. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:198 P.ramorum:129

Q5KFB0              	100.00%		H3HAT3              	100.00%
Bootstrap support for Q5KFB0 as seed ortholog is 100%.
Bootstrap support for H3HAT3 as seed ortholog is 99%.

Group of orthologs #980. Best score 198 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.ramorum:198

Q5KGU0              	100.00%		H3HEG2              	100.00%
Bootstrap support for Q5KGU0 as seed ortholog is 76%.
Bootstrap support for H3HEG2 as seed ortholog is 100%.

Group of orthologs #981. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.ramorum:150

Q5KQ29              	100.00%		H3GR58              	100.00%
                    	       		H3GR59              	24.42%
                    	       		H3GP17              	24.10%
                    	       		H3GQF2              	23.79%
                    	       		H3H1Q0              	23.73%
                    	       		H3GR68              	21.65%
Bootstrap support for Q5KQ29 as seed ortholog is 69%.
Alternative seed ortholog is Q5KJC1 (15 bits away from this cluster)
Bootstrap support for H3GR58 as seed ortholog is 99%.

Group of orthologs #982. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5KP63              	100.00%		H3GFJ2              	100.00%
                    	       		H3G8J1              	79.15%
Bootstrap support for Q5KP63 as seed ortholog is 100%.
Bootstrap support for H3GFJ2 as seed ortholog is 100%.

Group of orthologs #983. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5K9W6              	100.00%		H3GBM4              	100.00%
Bootstrap support for Q5K9W6 as seed ortholog is 100%.
Bootstrap support for H3GBM4 as seed ortholog is 100%.

Group of orthologs #984. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5KKJ2              	100.00%		H3G8K0              	100.00%
Bootstrap support for Q5KKJ2 as seed ortholog is 100%.
Bootstrap support for H3G8K0 as seed ortholog is 100%.

Group of orthologs #985. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5KPF3              	100.00%		H3G9Z9              	100.00%
Bootstrap support for Q5KPF3 as seed ortholog is 100%.
Bootstrap support for H3G9Z9 as seed ortholog is 100%.

Group of orthologs #986. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5KIE7              	100.00%		H3GWZ9              	100.00%
Bootstrap support for Q5KIE7 as seed ortholog is 100%.
Bootstrap support for H3GWZ9 as seed ortholog is 100%.

Group of orthologs #987. Best score 197 bits
Score difference with first non-orthologous sequence - C.neoformans:197 P.ramorum:197

Q5KNB6              	100.00%		H3HCI3              	100.00%
Bootstrap support for Q5KNB6 as seed ortholog is 100%.
Bootstrap support for H3HCI3 as seed ortholog is 100%.

Group of orthologs #988. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.ramorum:196

Q5KBH5              	100.00%		H3GG33              	100.00%
Bootstrap support for Q5KBH5 as seed ortholog is 100%.
Bootstrap support for H3GG33 as seed ortholog is 100%.

Group of orthologs #989. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:196

P0CM02              	100.00%		H3GUI6              	100.00%
Bootstrap support for P0CM02 as seed ortholog is 79%.
Bootstrap support for H3GUI6 as seed ortholog is 100%.

Group of orthologs #990. Best score 196 bits
Score difference with first non-orthologous sequence - C.neoformans:196 P.ramorum:196

Q5KE09              	100.00%		H3HD56              	100.00%
Bootstrap support for Q5KE09 as seed ortholog is 100%.
Bootstrap support for H3HD56 as seed ortholog is 100%.

Group of orthologs #991. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.ramorum:102

Q5KPI4              	100.00%		H3G953              	100.00%
Q5K938              	100.00%		H3G954              	100.00%
Bootstrap support for Q5KPI4 as seed ortholog is 100%.
Bootstrap support for Q5K938 as seed ortholog is 100%.
Bootstrap support for H3G953 as seed ortholog is 99%.
Bootstrap support for H3G954 as seed ortholog is 99%.

Group of orthologs #992. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.ramorum:195

P0CO54              	100.00%		H3G8X4              	100.00%
Bootstrap support for P0CO54 as seed ortholog is 100%.
Bootstrap support for H3G8X4 as seed ortholog is 100%.

Group of orthologs #993. Best score 195 bits
Score difference with first non-orthologous sequence - C.neoformans:195 P.ramorum:195

Q5KC15              	100.00%		H3H2I2              	100.00%
Bootstrap support for Q5KC15 as seed ortholog is 100%.
Bootstrap support for H3H2I2 as seed ortholog is 100%.

Group of orthologs #994. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.ramorum:194

Q5KAG0              	100.00%		H3GGA8              	100.00%
                    	       		H3GGD0              	92.88%
                    	       		H3GGE5              	78.47%
Bootstrap support for Q5KAG0 as seed ortholog is 100%.
Bootstrap support for H3GGA8 as seed ortholog is 100%.

Group of orthologs #995. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.ramorum:194

P0CQ52              	100.00%		H3G9W2              	100.00%
Bootstrap support for P0CQ52 as seed ortholog is 100%.
Bootstrap support for H3G9W2 as seed ortholog is 100%.

Group of orthologs #996. Best score 194 bits
Score difference with first non-orthologous sequence - C.neoformans:194 P.ramorum:63

Q5KDK4              	100.00%		H3G4Y0              	100.00%
Bootstrap support for Q5KDK4 as seed ortholog is 100%.
Bootstrap support for H3G4Y0 as seed ortholog is 97%.

Group of orthologs #997. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:111

Q5KQ67              	100.00%		H3GSZ2              	100.00%
                    	       		H3G9G2              	49.50%
                    	       		H3H8Q4              	42.69%
Bootstrap support for Q5KQ67 as seed ortholog is 99%.
Bootstrap support for H3GSZ2 as seed ortholog is 99%.

Group of orthologs #998. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KAX8              	100.00%		H3G971              	100.00%
Bootstrap support for Q5KAX8 as seed ortholog is 100%.
Bootstrap support for H3G971 as seed ortholog is 100%.

Group of orthologs #999. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

P0CN10              	100.00%		H3GH76              	100.00%
Bootstrap support for P0CN10 as seed ortholog is 100%.
Bootstrap support for H3GH76 as seed ortholog is 100%.

Group of orthologs #1000. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KAG9              	100.00%		H3GJT5              	100.00%
Bootstrap support for Q5KAG9 as seed ortholog is 100%.
Bootstrap support for H3GJT5 as seed ortholog is 100%.

Group of orthologs #1001. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KH69              	100.00%		H3GEQ3              	100.00%
Bootstrap support for Q5KH69 as seed ortholog is 100%.
Bootstrap support for H3GEQ3 as seed ortholog is 100%.

Group of orthologs #1002. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KH84              	100.00%		H3GFF5              	100.00%
Bootstrap support for Q5KH84 as seed ortholog is 100%.
Bootstrap support for H3GFF5 as seed ortholog is 100%.

Group of orthologs #1003. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KL88              	100.00%		H3GFH2              	100.00%
Bootstrap support for Q5KL88 as seed ortholog is 100%.
Bootstrap support for H3GFH2 as seed ortholog is 100%.

Group of orthologs #1004. Best score 193 bits
Score difference with first non-orthologous sequence - C.neoformans:193 P.ramorum:193

Q5KKY7              	100.00%		H3GUB3              	100.00%
Bootstrap support for Q5KKY7 as seed ortholog is 100%.
Bootstrap support for H3GUB3 as seed ortholog is 100%.

Group of orthologs #1005. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:15 P.ramorum:46

Q5KGS1              	100.00%		H3G6T1              	100.00%
                    	       		H3HCG7              	5.13%
Bootstrap support for Q5KGS1 as seed ortholog is 70%.
Alternative seed ortholog is Q5KJ96 (15 bits away from this cluster)
Bootstrap support for H3G6T1 as seed ortholog is 97%.

Group of orthologs #1006. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

Q5KNH2              	100.00%		H3GAY1              	100.00%
                    	       		H3GAD4              	83.08%
Bootstrap support for Q5KNH2 as seed ortholog is 100%.
Bootstrap support for H3GAY1 as seed ortholog is 100%.

Group of orthologs #1007. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

P0CN78              	100.00%		H3G8N7              	100.00%
Bootstrap support for P0CN78 as seed ortholog is 100%.
Bootstrap support for H3G8N7 as seed ortholog is 100%.

Group of orthologs #1008. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

Q5KA46              	100.00%		H3G6N3              	100.00%
Bootstrap support for Q5KA46 as seed ortholog is 100%.
Bootstrap support for H3G6N3 as seed ortholog is 100%.

Group of orthologs #1009. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

Q5KEX8              	100.00%		H3G940              	100.00%
Bootstrap support for Q5KEX8 as seed ortholog is 100%.
Bootstrap support for H3G940 as seed ortholog is 100%.

Group of orthologs #1010. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

Q5KIZ8              	100.00%		H3G8Q0              	100.00%
Bootstrap support for Q5KIZ8 as seed ortholog is 100%.
Bootstrap support for H3G8Q0 as seed ortholog is 100%.

Group of orthologs #1011. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:192

Q5KEP9              	100.00%		H3GQ98              	100.00%
Bootstrap support for Q5KEP9 as seed ortholog is 100%.
Bootstrap support for H3GQ98 as seed ortholog is 100%.

Group of orthologs #1012. Best score 192 bits
Score difference with first non-orthologous sequence - C.neoformans:192 P.ramorum:71

Q5K8Y1              	100.00%		H3HC67              	100.00%
Bootstrap support for Q5K8Y1 as seed ortholog is 100%.
Bootstrap support for H3HC67 as seed ortholog is 88%.

Group of orthologs #1013. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:191

Q5KEF4              	100.00%		H3GYW6              	100.00%
                    	       		H3GYV5              	32.51%
Bootstrap support for Q5KEF4 as seed ortholog is 85%.
Bootstrap support for H3GYW6 as seed ortholog is 100%.

Group of orthologs #1014. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5K736              	100.00%		H3HBU7              	100.00%
                    	       		H3GWF5              	6.95%
Bootstrap support for Q5K736 as seed ortholog is 100%.
Bootstrap support for H3HBU7 as seed ortholog is 100%.

Group of orthologs #1015. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5K7W8              	100.00%		H3G8S1              	100.00%
Bootstrap support for Q5K7W8 as seed ortholog is 100%.
Bootstrap support for H3G8S1 as seed ortholog is 100%.

Group of orthologs #1016. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5KAM1              	100.00%		H3GA46              	100.00%
Bootstrap support for Q5KAM1 as seed ortholog is 100%.
Bootstrap support for H3GA46 as seed ortholog is 100%.

Group of orthologs #1017. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:125

Q5KJ01              	100.00%		H3G855              	100.00%
Bootstrap support for Q5KJ01 as seed ortholog is 100%.
Bootstrap support for H3G855 as seed ortholog is 99%.

Group of orthologs #1018. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5KEQ0              	100.00%		H3GWY1              	100.00%
Bootstrap support for Q5KEQ0 as seed ortholog is 100%.
Bootstrap support for H3GWY1 as seed ortholog is 100%.

Group of orthologs #1019. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5KFR3              	100.00%		H3GWX1              	100.00%
Bootstrap support for Q5KFR3 as seed ortholog is 100%.
Bootstrap support for H3GWX1 as seed ortholog is 100%.

Group of orthologs #1020. Best score 191 bits
Score difference with first non-orthologous sequence - C.neoformans:191 P.ramorum:191

Q5KQ88              	100.00%		H3GU31              	100.00%
Bootstrap support for Q5KQ88 as seed ortholog is 100%.
Bootstrap support for H3GU31 as seed ortholog is 100%.

Group of orthologs #1021. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:31

Q5KKM5              	100.00%		H3GNN5              	100.00%
                    	       		H3GNN8              	57.52%
                    	       		H3GNN7              	53.22%
                    	       		H3GNN6              	52.29%
                    	       		H3GNT6              	50.93%
                    	       		H3GZG0              	50.93%
                    	       		H3H827              	49.36%
                    	       		H3GQK2              	48.35%
                    	       		H3H7Z9              	45.99%
                    	       		H3GMS5              	42.62%
                    	       		H3G931              	41.91%
                    	       		H3GJ22              	28.94%
                    	       		H3H2D6              	28.44%
                    	       		H3H565              	24.57%
Bootstrap support for Q5KKM5 as seed ortholog is 100%.
Bootstrap support for H3GNN5 as seed ortholog is 76%.

Group of orthologs #1022. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KGM8              	100.00%		H3G8Y2              	100.00%
                    	       		H3H2X8              	43.75%
Bootstrap support for Q5KGM8 as seed ortholog is 100%.
Bootstrap support for H3G8Y2 as seed ortholog is 100%.

Group of orthologs #1023. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KBW6              	100.00%		H3G9W8              	100.00%
Bootstrap support for Q5KBW6 as seed ortholog is 100%.
Bootstrap support for H3G9W8 as seed ortholog is 100%.

Group of orthologs #1024. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:87

Q5KFG5              	100.00%		H3G7W6              	100.00%
Bootstrap support for Q5KFG5 as seed ortholog is 100%.
Bootstrap support for H3G7W6 as seed ortholog is 99%.

Group of orthologs #1025. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KF53              	100.00%		H3GAQ7              	100.00%
Bootstrap support for Q5KF53 as seed ortholog is 100%.
Bootstrap support for H3GAQ7 as seed ortholog is 100%.

Group of orthologs #1026. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KM68              	100.00%		H3G8T5              	100.00%
Bootstrap support for Q5KM68 as seed ortholog is 100%.
Bootstrap support for H3G8T5 as seed ortholog is 100%.

Group of orthologs #1027. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KJJ9              	100.00%		H3GCM0              	100.00%
Bootstrap support for Q5KJJ9 as seed ortholog is 100%.
Bootstrap support for H3GCM0 as seed ortholog is 100%.

Group of orthologs #1028. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KM29              	100.00%		H3GBG3              	100.00%
Bootstrap support for Q5KM29 as seed ortholog is 100%.
Bootstrap support for H3GBG3 as seed ortholog is 100%.

Group of orthologs #1029. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KKH6              	100.00%		H3GNM0              	100.00%
Bootstrap support for Q5KKH6 as seed ortholog is 100%.
Bootstrap support for H3GNM0 as seed ortholog is 100%.

Group of orthologs #1030. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

P0CR48              	100.00%		H3H3F7              	100.00%
Bootstrap support for P0CR48 as seed ortholog is 100%.
Bootstrap support for H3H3F7 as seed ortholog is 100%.

Group of orthologs #1031. Best score 190 bits
Score difference with first non-orthologous sequence - C.neoformans:190 P.ramorum:190

Q5KNA5              	100.00%		H3GRS6              	100.00%
Bootstrap support for Q5KNA5 as seed ortholog is 100%.
Bootstrap support for H3GRS6 as seed ortholog is 100%.

Group of orthologs #1032. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.ramorum:189

Q5K8I0              	100.00%		H3G5M6              	100.00%
Bootstrap support for Q5K8I0 as seed ortholog is 100%.
Bootstrap support for H3G5M6 as seed ortholog is 100%.

Group of orthologs #1033. Best score 189 bits
Score difference with first non-orthologous sequence - C.neoformans:189 P.ramorum:189

Q5KIZ3              	100.00%		H3HCT8              	100.00%
Bootstrap support for Q5KIZ3 as seed ortholog is 100%.
Bootstrap support for H3HCT8 as seed ortholog is 100%.

Group of orthologs #1034. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.ramorum:188

Q5KAJ6              	100.00%		H3HC98              	100.00%
                    	       		H3H721              	71.22%
Bootstrap support for Q5KAJ6 as seed ortholog is 100%.
Bootstrap support for H3HC98 as seed ortholog is 100%.

Group of orthologs #1035. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.ramorum:188

Q5K979              	100.00%		H3GA40              	100.00%
Bootstrap support for Q5K979 as seed ortholog is 100%.
Bootstrap support for H3GA40 as seed ortholog is 100%.

Group of orthologs #1036. Best score 188 bits
Score difference with first non-orthologous sequence - C.neoformans:188 P.ramorum:188

Q5KAE4              	100.00%		H3GTE2              	100.00%
Bootstrap support for Q5KAE4 as seed ortholog is 100%.
Bootstrap support for H3GTE2 as seed ortholog is 100%.

Group of orthologs #1037. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.ramorum:187

Q5K974              	100.00%		H3GAQ2              	100.00%
Bootstrap support for Q5K974 as seed ortholog is 100%.
Bootstrap support for H3GAQ2 as seed ortholog is 100%.

Group of orthologs #1038. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:187 P.ramorum:187

Q5KKH3              	100.00%		H3G7K0              	100.00%
Bootstrap support for Q5KKH3 as seed ortholog is 100%.
Bootstrap support for H3G7K0 as seed ortholog is 100%.

Group of orthologs #1039. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.ramorum:91

Q5KPC4              	100.00%		H3G981              	100.00%
Bootstrap support for Q5KPC4 as seed ortholog is 99%.
Bootstrap support for H3G981 as seed ortholog is 99%.

Group of orthologs #1040. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:187

Q5KJS0              	100.00%		H3GE00              	100.00%
Bootstrap support for Q5KJS0 as seed ortholog is 98%.
Bootstrap support for H3GE00 as seed ortholog is 100%.

Group of orthologs #1041. Best score 187 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.ramorum:37

Q5KKX6              	100.00%		H3HEH4              	100.00%
Bootstrap support for Q5KKX6 as seed ortholog is 90%.
Bootstrap support for H3HEH4 as seed ortholog is 83%.

Group of orthologs #1042. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.ramorum:186

Q5KD00              	100.00%		H3GQQ0              	100.00%
                    	       		H3G794              	29.30%
                    	       		H3G7I7              	24.73%
Bootstrap support for Q5KD00 as seed ortholog is 100%.
Bootstrap support for H3GQQ0 as seed ortholog is 100%.

Group of orthologs #1043. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.ramorum:186

Q5KIC5              	100.00%		H3GFQ7              	100.00%
Bootstrap support for Q5KIC5 as seed ortholog is 100%.
Bootstrap support for H3GFQ7 as seed ortholog is 100%.

Group of orthologs #1044. Best score 186 bits
Score difference with first non-orthologous sequence - C.neoformans:186 P.ramorum:186

Q5K864              	100.00%		H3H3Y4              	100.00%
Bootstrap support for Q5K864 as seed ortholog is 100%.
Bootstrap support for H3H3Y4 as seed ortholog is 100%.

Group of orthologs #1045. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.ramorum:185

Q5KK09              	100.00%		H3G779              	100.00%
                    	       		H3GFB2              	63.84%
Bootstrap support for Q5KK09 as seed ortholog is 100%.
Bootstrap support for H3G779 as seed ortholog is 100%.

Group of orthologs #1046. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:14

P0CP14              	100.00%		H3G8L1              	100.00%
Bootstrap support for P0CP14 as seed ortholog is 96%.
Bootstrap support for H3G8L1 as seed ortholog is 66%.
Alternative seed ortholog is H3G7G2 (14 bits away from this cluster)

Group of orthologs #1047. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.ramorum:185

Q5KAQ6              	100.00%		H3GJE0              	100.00%
Bootstrap support for Q5KAQ6 as seed ortholog is 100%.
Bootstrap support for H3GJE0 as seed ortholog is 100%.

Group of orthologs #1048. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.ramorum:185

Q5KP05              	100.00%		H3G857              	100.00%
Bootstrap support for Q5KP05 as seed ortholog is 100%.
Bootstrap support for H3G857 as seed ortholog is 100%.

Group of orthologs #1049. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:185 P.ramorum:185

Q5KGD3              	100.00%		H3GN89              	100.00%
Bootstrap support for Q5KGD3 as seed ortholog is 100%.
Bootstrap support for H3GN89 as seed ortholog is 100%.

Group of orthologs #1050. Best score 185 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.ramorum:185

Q5KM58              	100.00%		H3H5E8              	100.00%
Bootstrap support for Q5KM58 as seed ortholog is 82%.
Bootstrap support for H3H5E8 as seed ortholog is 100%.

Group of orthologs #1051. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.ramorum:184

Q5KKJ8              	100.00%		H3G4Z8              	100.00%
                    	       		H3GAI8              	100.00%
                    	       		H3GAI7              	65.31%
Bootstrap support for Q5KKJ8 as seed ortholog is 83%.
Bootstrap support for H3G4Z8 as seed ortholog is 100%.
Bootstrap support for H3GAI8 as seed ortholog is 100%.

Group of orthologs #1052. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

P0CL98              	100.00%		H3G8B6              	100.00%
Bootstrap support for P0CL98 as seed ortholog is 100%.
Bootstrap support for H3G8B6 as seed ortholog is 100%.

Group of orthologs #1053. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5K9M5              	100.00%		H3G9D9              	100.00%
Bootstrap support for Q5K9M5 as seed ortholog is 100%.
Bootstrap support for H3G9D9 as seed ortholog is 100%.

Group of orthologs #1054. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5KGQ8              	100.00%		H3G899              	100.00%
Bootstrap support for Q5KGQ8 as seed ortholog is 100%.
Bootstrap support for H3G899 as seed ortholog is 100%.

Group of orthologs #1055. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5KH16              	100.00%		H3GCL0              	100.00%
Bootstrap support for Q5KH16 as seed ortholog is 100%.
Bootstrap support for H3GCL0 as seed ortholog is 100%.

Group of orthologs #1056. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5KPZ0              	100.00%		H3G5V4              	100.00%
Bootstrap support for Q5KPZ0 as seed ortholog is 100%.
Bootstrap support for H3G5V4 as seed ortholog is 100%.

Group of orthologs #1057. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5KGM3              	100.00%		H3GQ87              	100.00%
Bootstrap support for Q5KGM3 as seed ortholog is 100%.
Bootstrap support for H3GQ87 as seed ortholog is 100%.

Group of orthologs #1058. Best score 184 bits
Score difference with first non-orthologous sequence - C.neoformans:184 P.ramorum:184

Q5KMY6              	100.00%		H3HC64              	100.00%
Bootstrap support for Q5KMY6 as seed ortholog is 100%.
Bootstrap support for H3HC64 as seed ortholog is 100%.

Group of orthologs #1059. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

Q5KNB4              	100.00%		H3G691              	100.00%
                    	       		H3G5X8              	95.65%
                    	       		H3G5R8              	86.96%
                    	       		H3G5L3              	76.96%
                    	       		H3G5I0              	75.22%
                    	       		H3G6F9              	51.74%
                    	       		H3G558              	51.09%
Bootstrap support for Q5KNB4 as seed ortholog is 100%.
Bootstrap support for H3G691 as seed ortholog is 100%.

Group of orthologs #1060. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

P0CP64              	100.00%		H3GEA6              	100.00%
Bootstrap support for P0CP64 as seed ortholog is 100%.
Bootstrap support for H3GEA6 as seed ortholog is 100%.

Group of orthologs #1061. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

Q5KKX2              	100.00%		H3GH50              	100.00%
Bootstrap support for Q5KKX2 as seed ortholog is 100%.
Bootstrap support for H3GH50 as seed ortholog is 100%.

Group of orthologs #1062. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

Q5KIB2              	100.00%		H3GKK6              	100.00%
Bootstrap support for Q5KIB2 as seed ortholog is 100%.
Bootstrap support for H3GKK6 as seed ortholog is 100%.

Group of orthologs #1063. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

Q5KHU9              	100.00%		H3GZK8              	100.00%
Bootstrap support for Q5KHU9 as seed ortholog is 100%.
Bootstrap support for H3GZK8 as seed ortholog is 100%.

Group of orthologs #1064. Best score 183 bits
Score difference with first non-orthologous sequence - C.neoformans:183 P.ramorum:183

Q5KKX5              	100.00%		H3HB82              	100.00%
Bootstrap support for Q5KKX5 as seed ortholog is 100%.
Bootstrap support for H3HB82 as seed ortholog is 100%.

Group of orthologs #1065. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:182

Q5KJ60              	100.00%		H3GJG1              	100.00%
Q5KHK7              	100.00%		H3GIQ7              	100.00%
Q5KHK4              	100.00%		H3GJH2              	100.00%
Q5KJ75              	65.59%		H3GJF9              	78.39%
Q5K821              	54.96%		H3GJH7              	73.11%
Q5KFI4              	21.13%		H3GJH1              	72.13%
                    	       		H3H251              	71.58%
                    	       		H3GJF8              	67.84%
                    	       		H3GJH6              	66.25%
                    	       		H3GJH0              	64.78%
                    	       		H3GJG0              	62.71%
                    	       		H3GX59              	57.80%
                    	       		H3GJH3              	55.46%
                    	       		H3GXR7              	44.12%
                    	       		H3GZ89              	41.32%
                    	       		H3H5U1              	39.85%
                    	       		H3GES0              	25.14%
Bootstrap support for Q5KJ60 as seed ortholog is 100%.
Bootstrap support for Q5KHK7 as seed ortholog is 100%.
Bootstrap support for Q5KHK4 as seed ortholog is 100%.
Bootstrap support for H3GJG1 as seed ortholog is 100%.
Bootstrap support for H3GIQ7 as seed ortholog is 100%.
Bootstrap support for H3GJH2 as seed ortholog is 100%.

Group of orthologs #1066. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:105

Q5K756              	100.00%		H3G9X5              	100.00%
Q5KM34              	100.00%		H3GV89              	100.00%
Bootstrap support for Q5K756 as seed ortholog is 100%.
Bootstrap support for Q5KM34 as seed ortholog is 99%.
Bootstrap support for H3G9X5 as seed ortholog is 99%.
Bootstrap support for H3GV89 as seed ortholog is 99%.

Group of orthologs #1067. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:64

P0CM92              	100.00%		H3GNL3              	100.00%
                    	       		H3GWP6              	19.07%
                    	       		H3GHW4              	6.57%
Bootstrap support for P0CM92 as seed ortholog is 100%.
Bootstrap support for H3GNL3 as seed ortholog is 78%.

Group of orthologs #1068. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:34

Q5KA56              	100.00%		H3G939              	100.00%
Bootstrap support for Q5KA56 as seed ortholog is 100%.
Bootstrap support for H3G939 as seed ortholog is 80%.

Group of orthologs #1069. Best score 182 bits
Score difference with first non-orthologous sequence - C.neoformans:182 P.ramorum:182

P0CP10              	100.00%		H3GG46              	100.00%
Bootstrap support for P0CP10 as seed ortholog is 100%.
Bootstrap support for H3GG46 as seed ortholog is 100%.

Group of orthologs #1070. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:181

P0CN98              	100.00%		H3GAL3              	100.00%
                    	       		H3GAL2              	88.42%
Bootstrap support for P0CN98 as seed ortholog is 100%.
Bootstrap support for H3GAL3 as seed ortholog is 100%.

Group of orthologs #1071. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:181

Q5KB57              	100.00%		H3GAP3              	100.00%
Bootstrap support for Q5KB57 as seed ortholog is 100%.
Bootstrap support for H3GAP3 as seed ortholog is 100%.

Group of orthologs #1072. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:181

Q5K721              	100.00%		H3GFG5              	100.00%
Bootstrap support for Q5K721 as seed ortholog is 100%.
Bootstrap support for H3GFG5 as seed ortholog is 100%.

Group of orthologs #1073. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:181

P0CQ64              	100.00%		H3GHT1              	100.00%
Bootstrap support for P0CQ64 as seed ortholog is 100%.
Bootstrap support for H3GHT1 as seed ortholog is 100%.

Group of orthologs #1074. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:115

Q5KFV8              	100.00%		H3GA88              	100.00%
Bootstrap support for Q5KFV8 as seed ortholog is 100%.
Bootstrap support for H3GA88 as seed ortholog is 99%.

Group of orthologs #1075. Best score 181 bits
Score difference with first non-orthologous sequence - C.neoformans:181 P.ramorum:181

Q5KMA0              	100.00%		H3G7U4              	100.00%
Bootstrap support for Q5KMA0 as seed ortholog is 100%.
Bootstrap support for H3G7U4 as seed ortholog is 100%.

Group of orthologs #1076. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:180

Q5KNU9              	100.00%		H3HAZ0              	100.00%
                    	       		H3GCK9              	59.18%
Bootstrap support for Q5KNU9 as seed ortholog is 89%.
Bootstrap support for H3HAZ0 as seed ortholog is 100%.

Group of orthologs #1077. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:72

Q5K720              	100.00%		H3GDE6              	100.00%
Bootstrap support for Q5K720 as seed ortholog is 96%.
Bootstrap support for H3GDE6 as seed ortholog is 99%.

Group of orthologs #1078. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:40

Q5KCJ5              	100.00%		H3GAR1              	100.00%
Bootstrap support for Q5KCJ5 as seed ortholog is 91%.
Bootstrap support for H3GAR1 as seed ortholog is 85%.

Group of orthologs #1079. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.ramorum:180

Q5KGV9              	100.00%		H3G997              	100.00%
Bootstrap support for Q5KGV9 as seed ortholog is 100%.
Bootstrap support for H3G997 as seed ortholog is 100%.

Group of orthologs #1080. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.ramorum:180

Q5KIE6              	100.00%		H3G9C3              	100.00%
Bootstrap support for Q5KIE6 as seed ortholog is 100%.
Bootstrap support for H3G9C3 as seed ortholog is 100%.

Group of orthologs #1081. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.ramorum:112

Q5KBH4              	100.00%		H3GW85              	100.00%
Bootstrap support for Q5KBH4 as seed ortholog is 100%.
Bootstrap support for H3GW85 as seed ortholog is 99%.

Group of orthologs #1082. Best score 180 bits
Score difference with first non-orthologous sequence - C.neoformans:180 P.ramorum:46

Q5KLM4              	100.00%		H3GW21              	100.00%
Bootstrap support for Q5KLM4 as seed ortholog is 100%.
Bootstrap support for H3GW21 as seed ortholog is 90%.

Group of orthologs #1083. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.ramorum:31

Q5KB48              	100.00%		H3G8N8              	100.00%
Bootstrap support for Q5KB48 as seed ortholog is 99%.
Bootstrap support for H3G8N8 as seed ortholog is 86%.

Group of orthologs #1084. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.ramorum:179

Q5KPS5              	100.00%		H3GA82              	100.00%
Bootstrap support for Q5KPS5 as seed ortholog is 100%.
Bootstrap support for H3GA82 as seed ortholog is 100%.

Group of orthologs #1085. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.ramorum:179

Q5KN08              	100.00%		H3GSF0              	100.00%
Bootstrap support for Q5KN08 as seed ortholog is 97%.
Bootstrap support for H3GSF0 as seed ortholog is 100%.

Group of orthologs #1086. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.ramorum:179

Q5K8L4              	100.00%		H3HD26              	100.00%
Bootstrap support for Q5K8L4 as seed ortholog is 100%.
Bootstrap support for H3HD26 as seed ortholog is 100%.

Group of orthologs #1087. Best score 179 bits
Score difference with first non-orthologous sequence - C.neoformans:179 P.ramorum:179

Q5KED8              	100.00%		H3HD68              	100.00%
Bootstrap support for Q5KED8 as seed ortholog is 100%.
Bootstrap support for H3HD68 as seed ortholog is 100%.

Group of orthologs #1088. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.ramorum:178

Q5KBT3              	100.00%		H3G6E8              	100.00%
Bootstrap support for Q5KBT3 as seed ortholog is 100%.
Bootstrap support for H3G6E8 as seed ortholog is 100%.

Group of orthologs #1089. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.ramorum:178

Q5KCK9              	100.00%		H3G9P1              	100.00%
Bootstrap support for Q5KCK9 as seed ortholog is 100%.
Bootstrap support for H3G9P1 as seed ortholog is 100%.

Group of orthologs #1090. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.ramorum:130

Q5KG23              	100.00%		H3G7A8              	100.00%
Bootstrap support for Q5KG23 as seed ortholog is 100%.
Bootstrap support for H3G7A8 as seed ortholog is 100%.

Group of orthologs #1091. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:178

Q5KJ08              	100.00%		H3GFL7              	100.00%
Bootstrap support for Q5KJ08 as seed ortholog is 99%.
Bootstrap support for H3GFL7 as seed ortholog is 100%.

Group of orthologs #1092. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:178 P.ramorum:178

Q5KBT5              	100.00%		H3GNV8              	100.00%
Bootstrap support for Q5KBT5 as seed ortholog is 100%.
Bootstrap support for H3GNV8 as seed ortholog is 100%.

Group of orthologs #1093. Best score 178 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:42

Q5KHB0              	100.00%		H3GTG5              	100.00%
Bootstrap support for Q5KHB0 as seed ortholog is 93%.
Bootstrap support for H3GTG5 as seed ortholog is 79%.

Group of orthologs #1094. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.ramorum:69

Q5K9Z8              	100.00%		H3G8P5              	100.00%
Bootstrap support for Q5K9Z8 as seed ortholog is 100%.
Bootstrap support for H3G8P5 as seed ortholog is 97%.

Group of orthologs #1095. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.ramorum:177

Q5KJN1              	100.00%		H3G5K1              	100.00%
Bootstrap support for Q5KJN1 as seed ortholog is 100%.
Bootstrap support for H3G5K1 as seed ortholog is 100%.

Group of orthologs #1096. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.ramorum:177

Q5KMJ7              	100.00%		H3GGQ6              	100.00%
Bootstrap support for Q5KMJ7 as seed ortholog is 100%.
Bootstrap support for H3GGQ6 as seed ortholog is 100%.

Group of orthologs #1097. Best score 177 bits
Score difference with first non-orthologous sequence - C.neoformans:177 P.ramorum:177

Q5KI08              	100.00%		H3GNC9              	100.00%
Bootstrap support for Q5KI08 as seed ortholog is 100%.
Bootstrap support for H3GNC9 as seed ortholog is 100%.

Group of orthologs #1098. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.ramorum:58

Q5K818              	100.00%		H3GA42              	100.00%
                    	       		H3G9T0              	17.62%
Bootstrap support for Q5K818 as seed ortholog is 56%.
Alternative seed ortholog is Q5KI42 (5 bits away from this cluster)
Bootstrap support for H3GA42 as seed ortholog is 98%.

Group of orthologs #1099. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KBW8              	100.00%		H3G5S1              	100.00%
Bootstrap support for Q5KBW8 as seed ortholog is 100%.
Bootstrap support for H3G5S1 as seed ortholog is 100%.

Group of orthologs #1100. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KHA2              	100.00%		H3GGU4              	100.00%
Bootstrap support for Q5KHA2 as seed ortholog is 100%.
Bootstrap support for H3GGU4 as seed ortholog is 100%.

Group of orthologs #1101. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KMC2              	100.00%		H3GFI7              	100.00%
Bootstrap support for Q5KMC2 as seed ortholog is 100%.
Bootstrap support for H3GFI7 as seed ortholog is 100%.

Group of orthologs #1102. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.ramorum:50

Q5KN75              	100.00%		H3GTD1              	100.00%
Bootstrap support for Q5KN75 as seed ortholog is 95%.
Bootstrap support for H3GTD1 as seed ortholog is 98%.

Group of orthologs #1103. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KJM4              	100.00%		H3GY11              	100.00%
Bootstrap support for Q5KJM4 as seed ortholog is 100%.
Bootstrap support for H3GY11 as seed ortholog is 100%.

Group of orthologs #1104. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KQ87              	100.00%		H3GXV0              	100.00%
Bootstrap support for Q5KQ87 as seed ortholog is 100%.
Bootstrap support for H3GXV0 as seed ortholog is 100%.

Group of orthologs #1105. Best score 176 bits
Score difference with first non-orthologous sequence - C.neoformans:176 P.ramorum:176

Q5KA31              	100.00%		H3HDC8              	100.00%
Bootstrap support for Q5KA31 as seed ortholog is 100%.
Bootstrap support for H3HDC8 as seed ortholog is 100%.

Group of orthologs #1106. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:175

P0CO62              	100.00%		H3G7Q8              	100.00%
Bootstrap support for P0CO62 as seed ortholog is 100%.
Bootstrap support for H3G7Q8 as seed ortholog is 100%.

Group of orthologs #1107. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:175

Q5KD38              	100.00%		H3GE78              	100.00%
Bootstrap support for Q5KD38 as seed ortholog is 100%.
Bootstrap support for H3GE78 as seed ortholog is 100%.

Group of orthologs #1108. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:175

Q5KNF1              	100.00%		H3G562              	100.00%
Bootstrap support for Q5KNF1 as seed ortholog is 100%.
Bootstrap support for H3G562 as seed ortholog is 100%.

Group of orthologs #1109. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:175

Q5KBM8              	100.00%		H3GVS8              	100.00%
Bootstrap support for Q5KBM8 as seed ortholog is 100%.
Bootstrap support for H3GVS8 as seed ortholog is 100%.

Group of orthologs #1110. Best score 175 bits
Score difference with first non-orthologous sequence - C.neoformans:175 P.ramorum:175

Q5K7F0              	100.00%		H3H197              	100.00%
Bootstrap support for Q5K7F0 as seed ortholog is 100%.
Bootstrap support for H3H197 as seed ortholog is 100%.

Group of orthologs #1111. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.ramorum:174

Q5KLH8              	100.00%		H3G6D6              	100.00%
Bootstrap support for Q5KLH8 as seed ortholog is 100%.
Bootstrap support for H3G6D6 as seed ortholog is 100%.

Group of orthologs #1112. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.ramorum:174

P0CN48              	100.00%		H3H0U9              	100.00%
Bootstrap support for P0CN48 as seed ortholog is 100%.
Bootstrap support for H3H0U9 as seed ortholog is 100%.

Group of orthologs #1113. Best score 174 bits
Score difference with first non-orthologous sequence - C.neoformans:174 P.ramorum:174

Q5KL89              	100.00%		H3GQX2              	100.00%
Bootstrap support for Q5KL89 as seed ortholog is 100%.
Bootstrap support for H3GQX2 as seed ortholog is 100%.

Group of orthologs #1114. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:40

Q5K7V1              	100.00%		H3G8G7              	100.00%
                    	       		H3G9M6              	9.95%
Bootstrap support for Q5K7V1 as seed ortholog is 96%.
Bootstrap support for H3G8G7 as seed ortholog is 86%.

Group of orthologs #1115. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:173

Q5KGV6              	100.00%		H3GVB8              	100.00%
                    	       		H3G9X8              	71.92%
Bootstrap support for Q5KGV6 as seed ortholog is 100%.
Bootstrap support for H3GVB8 as seed ortholog is 100%.

Group of orthologs #1116. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:173

Q5KCI8              	100.00%		H3G8A3              	100.00%
Bootstrap support for Q5KCI8 as seed ortholog is 100%.
Bootstrap support for H3G8A3 as seed ortholog is 100%.

Group of orthologs #1117. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.ramorum:17

Q5KD12              	100.00%		H3G8J6              	100.00%
Bootstrap support for Q5KD12 as seed ortholog is 99%.
Bootstrap support for H3G8J6 as seed ortholog is 79%.

Group of orthologs #1118. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:173

P0CM20              	100.00%		H3GHM1              	100.00%
Bootstrap support for P0CM20 as seed ortholog is 100%.
Bootstrap support for H3GHM1 as seed ortholog is 100%.

Group of orthologs #1119. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:173

Q5KLL5              	100.00%		H3G7X6              	100.00%
Bootstrap support for Q5KLL5 as seed ortholog is 100%.
Bootstrap support for H3G7X6 as seed ortholog is 100%.

Group of orthologs #1120. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:173

Q5KG66              	100.00%		H3GXU2              	100.00%
Bootstrap support for Q5KG66 as seed ortholog is 100%.
Bootstrap support for H3GXU2 as seed ortholog is 100%.

Group of orthologs #1121. Best score 173 bits
Score difference with first non-orthologous sequence - C.neoformans:173 P.ramorum:47

Q5KLV2              	100.00%		H3GZS2              	100.00%
Bootstrap support for Q5KLV2 as seed ortholog is 100%.
Bootstrap support for H3GZS2 as seed ortholog is 84%.

Group of orthologs #1122. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.ramorum:172

Q5KGJ7              	100.00%		H3GN52              	100.00%
                    	       		H3GNL8              	11.72%
Bootstrap support for Q5KGJ7 as seed ortholog is 100%.
Bootstrap support for H3GN52 as seed ortholog is 100%.

Group of orthologs #1123. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.ramorum:172

Q5KB25              	100.00%		H3GGX4              	100.00%
Bootstrap support for Q5KB25 as seed ortholog is 100%.
Bootstrap support for H3GGX4 as seed ortholog is 100%.

Group of orthologs #1124. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.ramorum:172

Q5KK13              	100.00%		H3G9R6              	100.00%
Bootstrap support for Q5KK13 as seed ortholog is 100%.
Bootstrap support for H3G9R6 as seed ortholog is 100%.

Group of orthologs #1125. Best score 172 bits
Score difference with first non-orthologous sequence - C.neoformans:172 P.ramorum:172

Q5KBX4              	100.00%		H3GLG9              	100.00%
Bootstrap support for Q5KBX4 as seed ortholog is 100%.
Bootstrap support for H3GLG9 as seed ortholog is 100%.

Group of orthologs #1126. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:57

Q5KI93              	100.00%		H3GN11              	100.00%
                    	       		H3H5V1              	22.64%
                    	       		H3GN94              	22.23%
                    	       		H3H410              	18.67%
                    	       		H3GRJ5              	16.98%
                    	       		H3GPZ3              	6.79%
Bootstrap support for Q5KI93 as seed ortholog is 100%.
Bootstrap support for H3GN11 as seed ortholog is 95%.

Group of orthologs #1127. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.ramorum:45

Q5KM53              	100.00%		H3H4A2              	100.00%
                    	       		H3H3P5              	37.25%
Bootstrap support for Q5KM53 as seed ortholog is 99%.
Bootstrap support for H3H4A2 as seed ortholog is 85%.

Group of orthologs #1128. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:171

P0CO00              	100.00%		H3G6D5              	100.00%
Bootstrap support for P0CO00 as seed ortholog is 100%.
Bootstrap support for H3G6D5 as seed ortholog is 100%.

Group of orthologs #1129. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:171

Q5KAP5              	100.00%		H3GGW5              	100.00%
Bootstrap support for Q5KAP5 as seed ortholog is 100%.
Bootstrap support for H3GGW5 as seed ortholog is 100%.

Group of orthologs #1130. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:171

P0CO86              	100.00%		H3GNF0              	100.00%
Bootstrap support for P0CO86 as seed ortholog is 100%.
Bootstrap support for H3GNF0 as seed ortholog is 100%.

Group of orthologs #1131. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:171

Q5K741              	100.00%		H3GUR6              	100.00%
Bootstrap support for Q5K741 as seed ortholog is 100%.
Bootstrap support for H3GUR6 as seed ortholog is 100%.

Group of orthologs #1132. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:59

Q5KP33              	100.00%		H3GFT3              	100.00%
Bootstrap support for Q5KP33 as seed ortholog is 100%.
Bootstrap support for H3GFT3 as seed ortholog is 91%.

Group of orthologs #1133. Best score 171 bits
Score difference with first non-orthologous sequence - C.neoformans:171 P.ramorum:171

Q5KH09              	100.00%		H3HCW0              	100.00%
Bootstrap support for Q5KH09 as seed ortholog is 100%.
Bootstrap support for H3HCW0 as seed ortholog is 100%.

Group of orthologs #1134. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.ramorum:125

Q5KLR2              	100.00%		H3GNT3              	100.00%
Q5KLQ4              	54.41%		
Bootstrap support for Q5KLR2 as seed ortholog is 100%.
Bootstrap support for H3GNT3 as seed ortholog is 100%.

Group of orthologs #1135. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.ramorum:170

Q5KHA1              	100.00%		H3G8T8              	100.00%
Bootstrap support for Q5KHA1 as seed ortholog is 100%.
Bootstrap support for H3G8T8 as seed ortholog is 100%.

Group of orthologs #1136. Best score 170 bits
Score difference with first non-orthologous sequence - C.neoformans:170 P.ramorum:170

Q5K8W6              	100.00%		H3GSP4              	100.00%
Bootstrap support for Q5K8W6 as seed ortholog is 100%.
Bootstrap support for H3GSP4 as seed ortholog is 100%.

Group of orthologs #1137. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:169

Q5KG91              	100.00%		H3GGK3              	100.00%
Bootstrap support for Q5KG91 as seed ortholog is 97%.
Bootstrap support for H3GGK3 as seed ortholog is 100%.

Group of orthologs #1138. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.ramorum:169

Q5KB44              	100.00%		H3GSE5              	100.00%
Bootstrap support for Q5KB44 as seed ortholog is 100%.
Bootstrap support for H3GSE5 as seed ortholog is 100%.

Group of orthologs #1139. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.ramorum:169

P0CM44              	100.00%		H3GZZ0              	100.00%
Bootstrap support for P0CM44 as seed ortholog is 66%.
Alternative seed ortholog is P0CM46 (18 bits away from this cluster)
Bootstrap support for H3GZZ0 as seed ortholog is 100%.

Group of orthologs #1140. Best score 169 bits
Score difference with first non-orthologous sequence - C.neoformans:169 P.ramorum:169

Q5KKV3              	100.00%		H3GUH8              	100.00%
Bootstrap support for Q5KKV3 as seed ortholog is 100%.
Bootstrap support for H3GUH8 as seed ortholog is 100%.

Group of orthologs #1141. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.ramorum:37

Q5KGS0              	100.00%		H3G8N2              	100.00%
                    	       		H3GI43              	20.79%
Bootstrap support for Q5KGS0 as seed ortholog is 84%.
Bootstrap support for H3G8N2 as seed ortholog is 84%.

Group of orthologs #1142. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KEP5              	100.00%		H3GTS8              	100.00%
                    	       		H3GFE6              	17.86%
Bootstrap support for Q5KEP5 as seed ortholog is 100%.
Bootstrap support for H3GTS8 as seed ortholog is 100%.

Group of orthologs #1143. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

P0CS08              	100.00%		H3G7A1              	100.00%
Bootstrap support for P0CS08 as seed ortholog is 100%.
Bootstrap support for H3G7A1 as seed ortholog is 100%.

Group of orthologs #1144. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KLK0              	100.00%		H3G714              	100.00%
Bootstrap support for Q5KLK0 as seed ortholog is 100%.
Bootstrap support for H3G714 as seed ortholog is 100%.

Group of orthologs #1145. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KCY7              	100.00%		H3GH48              	100.00%
Bootstrap support for Q5KCY7 as seed ortholog is 100%.
Bootstrap support for H3GH48 as seed ortholog is 100%.

Group of orthologs #1146. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

P0CO36              	100.00%		H3GPB1              	100.00%
Bootstrap support for P0CO36 as seed ortholog is 100%.
Bootstrap support for H3GPB1 as seed ortholog is 100%.

Group of orthologs #1147. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KPE9              	100.00%		H3GAV6              	100.00%
Bootstrap support for Q5KPE9 as seed ortholog is 100%.
Bootstrap support for H3GAV6 as seed ortholog is 100%.

Group of orthologs #1148. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KEW0              	100.00%		H3GM33              	100.00%
Bootstrap support for Q5KEW0 as seed ortholog is 100%.
Bootstrap support for H3GM33 as seed ortholog is 100%.

Group of orthologs #1149. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KK01              	100.00%		H3GR01              	100.00%
Bootstrap support for Q5KK01 as seed ortholog is 100%.
Bootstrap support for H3GR01 as seed ortholog is 100%.

Group of orthologs #1150. Best score 168 bits
Score difference with first non-orthologous sequence - C.neoformans:168 P.ramorum:168

Q5KPJ7              	100.00%		H3GV87              	100.00%
Bootstrap support for Q5KPJ7 as seed ortholog is 100%.
Bootstrap support for H3GV87 as seed ortholog is 100%.

Group of orthologs #1151. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.ramorum:167

Q5KN16              	100.00%		H3G8Z1              	100.00%
                    	       		H3G9E6              	27.42%
Bootstrap support for Q5KN16 as seed ortholog is 100%.
Bootstrap support for H3G8Z1 as seed ortholog is 100%.

Group of orthologs #1152. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:67

Q5KGW5              	100.00%		H3G6M2              	100.00%
Bootstrap support for Q5KGW5 as seed ortholog is 99%.
Bootstrap support for H3G6M2 as seed ortholog is 98%.

Group of orthologs #1153. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.ramorum:22

Q5KKK2              	100.00%		H3GIC5              	100.00%
Bootstrap support for Q5KKK2 as seed ortholog is 77%.
Bootstrap support for H3GIC5 as seed ortholog is 69%.
Alternative seed ortholog is H3G513 (22 bits away from this cluster)

Group of orthologs #1154. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.ramorum:167

Q5KAI5              	100.00%		H3H534              	100.00%
Bootstrap support for Q5KAI5 as seed ortholog is 100%.
Bootstrap support for H3H534 as seed ortholog is 100%.

Group of orthologs #1155. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.ramorum:167

Q5KFA0              	100.00%		H3HA86              	100.00%
Bootstrap support for Q5KFA0 as seed ortholog is 100%.
Bootstrap support for H3HA86 as seed ortholog is 100%.

Group of orthologs #1156. Best score 167 bits
Score difference with first non-orthologous sequence - C.neoformans:167 P.ramorum:167

Q5KQ70              	100.00%		H3HCD6              	100.00%
Bootstrap support for Q5KQ70 as seed ortholog is 100%.
Bootstrap support for H3HCD6 as seed ortholog is 100%.

Group of orthologs #1157. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:32

Q5KFD4              	100.00%		H3GEL5              	100.00%
                    	       		H3GEL4              	43.19%
Bootstrap support for Q5KFD4 as seed ortholog is 98%.
Bootstrap support for H3GEL5 as seed ortholog is 93%.

Group of orthologs #1158. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.ramorum:166

Q5KKM0              	100.00%		H3GED3              	100.00%
Bootstrap support for Q5KKM0 as seed ortholog is 100%.
Bootstrap support for H3GED3 as seed ortholog is 100%.

Group of orthologs #1159. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.ramorum:166

Q5KN77              	100.00%		H3GKH9              	100.00%
Bootstrap support for Q5KN77 as seed ortholog is 100%.
Bootstrap support for H3GKH9 as seed ortholog is 100%.

Group of orthologs #1160. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.ramorum:32

Q5KEF6              	100.00%		H3GYY0              	100.00%
Bootstrap support for Q5KEF6 as seed ortholog is 100%.
Bootstrap support for H3GYY0 as seed ortholog is 79%.

Group of orthologs #1161. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.ramorum:166

Q5KMR3              	100.00%		H3GV69              	100.00%
Bootstrap support for Q5KMR3 as seed ortholog is 100%.
Bootstrap support for H3GV69 as seed ortholog is 100%.

Group of orthologs #1162. Best score 166 bits
Score difference with first non-orthologous sequence - C.neoformans:166 P.ramorum:105

Q5KJK3              	100.00%		H3GZV7              	100.00%
Bootstrap support for Q5KJK3 as seed ortholog is 100%.
Bootstrap support for H3GZV7 as seed ortholog is 97%.

Group of orthologs #1163. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:68

Q5K861              	100.00%		H3HCQ6              	100.00%
Q5KD31              	100.00%		H3G706              	74.64%
Q5KD32              	55.48%		
Q5K862              	54.78%		
Q5KJE2              	49.39%		
Q5KEN0              	36.13%		
Q5KH90              	21.12%		
Bootstrap support for Q5K861 as seed ortholog is 99%.
Bootstrap support for Q5KD31 as seed ortholog is 99%.
Bootstrap support for H3HCQ6 as seed ortholog is 95%.

Group of orthologs #1164. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:17

Q5KMD1              	100.00%		H3G568              	100.00%
                    	       		H3G7E4              	19.50%
                    	       		H3G710              	14.97%
                    	       		H3G848              	10.66%
                    	       		H3G7X9              	7.03%
Bootstrap support for Q5KMD1 as seed ortholog is 100%.
Bootstrap support for H3G568 as seed ortholog is 65%.
Alternative seed ortholog is H3GTY1 (17 bits away from this cluster)

Group of orthologs #1165. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KJD6              	100.00%		H3G7K1              	100.00%
Q5KJA5              	24.04%		H3GWM2              	53.95%
Q5K8F0              	21.95%		
Bootstrap support for Q5KJD6 as seed ortholog is 100%.
Bootstrap support for H3G7K1 as seed ortholog is 100%.

Group of orthologs #1166. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:84

Q5KAP0              	100.00%		H3G6E1              	100.00%
Bootstrap support for Q5KAP0 as seed ortholog is 99%.
Bootstrap support for H3G6E1 as seed ortholog is 99%.

Group of orthologs #1167. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5K7J3              	100.00%		H3GAD2              	100.00%
Bootstrap support for Q5K7J3 as seed ortholog is 100%.
Bootstrap support for H3GAD2 as seed ortholog is 100%.

Group of orthologs #1168. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KF78              	100.00%		H3GD54              	100.00%
Bootstrap support for Q5KF78 as seed ortholog is 100%.
Bootstrap support for H3GD54 as seed ortholog is 100%.

Group of orthologs #1169. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KA59              	100.00%		H3GML7              	100.00%
Bootstrap support for Q5KA59 as seed ortholog is 100%.
Bootstrap support for H3GML7 as seed ortholog is 100%.

Group of orthologs #1170. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KDF8              	100.00%		H3GKZ8              	100.00%
Bootstrap support for Q5KDF8 as seed ortholog is 100%.
Bootstrap support for H3GKZ8 as seed ortholog is 100%.

Group of orthologs #1171. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5K9S4              	100.00%		H3GS81              	100.00%
Bootstrap support for Q5K9S4 as seed ortholog is 100%.
Bootstrap support for H3GS81 as seed ortholog is 100%.

Group of orthologs #1172. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:72

Q5KBA9              	100.00%		H3GUF3              	100.00%
Bootstrap support for Q5KBA9 as seed ortholog is 100%.
Bootstrap support for H3GUF3 as seed ortholog is 100%.

Group of orthologs #1173. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5K851              	100.00%		H3HBR3              	100.00%
Bootstrap support for Q5K851 as seed ortholog is 100%.
Bootstrap support for H3HBR3 as seed ortholog is 100%.

Group of orthologs #1174. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KJ49              	100.00%		H3HD53              	100.00%
Bootstrap support for Q5KJ49 as seed ortholog is 100%.
Bootstrap support for H3HD53 as seed ortholog is 100%.

Group of orthologs #1175. Best score 165 bits
Score difference with first non-orthologous sequence - C.neoformans:165 P.ramorum:165

Q5KN51              	100.00%		H3HDK0              	100.00%
Bootstrap support for Q5KN51 as seed ortholog is 100%.
Bootstrap support for H3HDK0 as seed ortholog is 100%.

Group of orthologs #1176. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:103

Q5KJ78              	100.00%		H3GUN3              	100.00%
                    	       		H3GG30              	60.37%
                    	       		H3G8K9              	58.92%
Bootstrap support for Q5KJ78 as seed ortholog is 100%.
Bootstrap support for H3GUN3 as seed ortholog is 99%.

Group of orthologs #1177. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:69

Q5K717              	100.00%		H3GS89              	100.00%
Q5KE65              	12.17%		
Bootstrap support for Q5K717 as seed ortholog is 95%.
Bootstrap support for H3GS89 as seed ortholog is 98%.

Group of orthologs #1178. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:164

Q5KAX2              	100.00%		H3GFD8              	100.00%
Bootstrap support for Q5KAX2 as seed ortholog is 100%.
Bootstrap support for H3GFD8 as seed ortholog is 100%.

Group of orthologs #1179. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:164

Q5K6T5              	100.00%		H3GLW2              	100.00%
Bootstrap support for Q5K6T5 as seed ortholog is 100%.
Bootstrap support for H3GLW2 as seed ortholog is 100%.

Group of orthologs #1180. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:164

Q5KJL2              	100.00%		H3GC59              	100.00%
Bootstrap support for Q5KJL2 as seed ortholog is 100%.
Bootstrap support for H3GC59 as seed ortholog is 100%.

Group of orthologs #1181. Best score 164 bits
Score difference with first non-orthologous sequence - C.neoformans:164 P.ramorum:164

Q5KKR0              	100.00%		H3GJM3              	100.00%
Bootstrap support for Q5KKR0 as seed ortholog is 100%.
Bootstrap support for H3GJM3 as seed ortholog is 100%.

Group of orthologs #1182. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:109

P0CR36              	100.00%		H3GGY9              	100.00%
                    	       		H3GMA7              	48.71%
                    	       		H3GM42              	7.75%
Bootstrap support for P0CR36 as seed ortholog is 99%.
Bootstrap support for H3GGY9 as seed ortholog is 99%.

Group of orthologs #1183. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:163

Q5KIL7              	100.00%		H3G9T4              	100.00%
                    	       		H3GE88              	12.64%
Bootstrap support for Q5KIL7 as seed ortholog is 100%.
Bootstrap support for H3G9T4 as seed ortholog is 100%.

Group of orthologs #1184. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:163

Q5KHT0              	100.00%		H3G9M1              	100.00%
Bootstrap support for Q5KHT0 as seed ortholog is 100%.
Bootstrap support for H3G9M1 as seed ortholog is 100%.

Group of orthologs #1185. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:163

Q5KAN9              	100.00%		H3GH52              	100.00%
Bootstrap support for Q5KAN9 as seed ortholog is 100%.
Bootstrap support for H3GH52 as seed ortholog is 100%.

Group of orthologs #1186. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.ramorum:163

Q5K8L7              	100.00%		H3GLL0              	100.00%
Bootstrap support for Q5K8L7 as seed ortholog is 73%.
Alternative seed ortholog is Q5KGK6 (19 bits away from this cluster)
Bootstrap support for H3GLL0 as seed ortholog is 100%.

Group of orthologs #1187. Best score 163 bits
Score difference with first non-orthologous sequence - C.neoformans:163 P.ramorum:163

Q5KKD0              	100.00%		H3GJB8              	100.00%
Bootstrap support for Q5KKD0 as seed ortholog is 100%.
Bootstrap support for H3GJB8 as seed ortholog is 100%.

Group of orthologs #1188. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.ramorum:162

Q5KGB9              	100.00%		H3HC72              	100.00%
                    	       		H3GAT1              	10.23%
Bootstrap support for Q5KGB9 as seed ortholog is 100%.
Bootstrap support for H3HC72 as seed ortholog is 100%.

Group of orthologs #1189. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:162 P.ramorum:162

Q5KF34              	100.00%		A1XDC2              	100.00%
Bootstrap support for Q5KF34 as seed ortholog is 100%.
Bootstrap support for A1XDC2 as seed ortholog is 100%.

Group of orthologs #1190. Best score 162 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.ramorum:82

Q5KEU0              	100.00%		H3GA22              	100.00%
Bootstrap support for Q5KEU0 as seed ortholog is 75%.
Bootstrap support for H3GA22 as seed ortholog is 99%.

Group of orthologs #1191. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:64

Q5KPC6              	100.00%		H3G4Z0              	100.00%
Q5KGL9              	6.82%		H3G518              	73.38%
                    	       		H3G5F8              	70.72%
                    	       		H3G8U3              	69.83%
Bootstrap support for Q5KPC6 as seed ortholog is 75%.
Bootstrap support for H3G4Z0 as seed ortholog is 92%.

Group of orthologs #1192. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:57

Q5KA03              	100.00%		H3GN73              	100.00%
Q5KPE0              	14.34%		H3GN83              	55.85%
                    	       		H3GN80              	41.54%
Bootstrap support for Q5KA03 as seed ortholog is 100%.
Bootstrap support for H3GN73 as seed ortholog is 90%.

Group of orthologs #1193. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:161

P0CL94              	100.00%		H3G6L7              	100.00%
                    	       		H3G6H5              	38.04%
Bootstrap support for P0CL94 as seed ortholog is 100%.
Bootstrap support for H3G6L7 as seed ortholog is 100%.

Group of orthologs #1194. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:161

Q5KH86              	100.00%		H3GAA9              	100.00%
                    	       		H3H4U4              	7.66%
Bootstrap support for Q5KH86 as seed ortholog is 100%.
Bootstrap support for H3GAA9 as seed ortholog is 100%.

Group of orthologs #1195. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:161

Q5KE92              	100.00%		H3H5G2              	100.00%
                    	       		H3GDD0              	5.20%
Bootstrap support for Q5KE92 as seed ortholog is 100%.
Bootstrap support for H3H5G2 as seed ortholog is 100%.

Group of orthologs #1196. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:105

Q5K7W7              	100.00%		H3G858              	100.00%
Bootstrap support for Q5K7W7 as seed ortholog is 99%.
Bootstrap support for H3G858 as seed ortholog is 99%.

Group of orthologs #1197. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:161

Q5K9S1              	100.00%		H3GAY3              	100.00%
Bootstrap support for Q5K9S1 as seed ortholog is 100%.
Bootstrap support for H3GAY3 as seed ortholog is 100%.

Group of orthologs #1198. Best score 161 bits
Score difference with first non-orthologous sequence - C.neoformans:161 P.ramorum:161

Q5K8K4              	100.00%		H3GC46              	100.00%
Bootstrap support for Q5K8K4 as seed ortholog is 100%.
Bootstrap support for H3GC46 as seed ortholog is 100%.

Group of orthologs #1199. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.ramorum:160

P0CS06              	100.00%		H3GKX8              	100.00%
Bootstrap support for P0CS06 as seed ortholog is 100%.
Bootstrap support for H3GKX8 as seed ortholog is 100%.

Group of orthologs #1200. Best score 160 bits
Score difference with first non-orthologous sequence - C.neoformans:160 P.ramorum:59

Q5K777              	100.00%		H3GSS2              	100.00%
Bootstrap support for Q5K777 as seed ortholog is 100%.
Bootstrap support for H3GSS2 as seed ortholog is 84%.

Group of orthologs #1201. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.ramorum:159

P0CO02              	100.00%		H3GA01              	100.00%
                    	       		H3G9Z2              	83.82%
Bootstrap support for P0CO02 as seed ortholog is 100%.
Bootstrap support for H3GA01 as seed ortholog is 100%.

Group of orthologs #1202. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:159 P.ramorum:159

Q5KNS3              	100.00%		H3H394              	100.00%
Bootstrap support for Q5KNS3 as seed ortholog is 100%.
Bootstrap support for H3H394 as seed ortholog is 100%.

Group of orthologs #1203. Best score 159 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:159

Q5KF96              	100.00%		H3HCW2              	100.00%
Bootstrap support for Q5KF96 as seed ortholog is 98%.
Bootstrap support for H3HCW2 as seed ortholog is 100%.

Group of orthologs #1204. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KN34              	100.00%		H3H9R8              	100.00%
                    	       		H3GZA4              	99.81%
Bootstrap support for Q5KN34 as seed ortholog is 100%.
Bootstrap support for H3H9R8 as seed ortholog is 100%.

Group of orthologs #1205. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

P0CP08              	100.00%		H3G8V2              	100.00%
Bootstrap support for P0CP08 as seed ortholog is 100%.
Bootstrap support for H3G8V2 as seed ortholog is 100%.

Group of orthologs #1206. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:61

P0CP96              	100.00%		H3G9S2              	100.00%
Bootstrap support for P0CP96 as seed ortholog is 100%.
Bootstrap support for H3G9S2 as seed ortholog is 99%.

Group of orthologs #1207. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

P0CQ50              	100.00%		H3GAG5              	100.00%
Bootstrap support for P0CQ50 as seed ortholog is 100%.
Bootstrap support for H3GAG5 as seed ortholog is 100%.

Group of orthologs #1208. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KCV9              	100.00%		H3GAS9              	100.00%
Bootstrap support for Q5KCV9 as seed ortholog is 100%.
Bootstrap support for H3GAS9 as seed ortholog is 100%.

Group of orthologs #1209. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:158

Q5KFS7              	100.00%		H3G8F4              	100.00%
Bootstrap support for Q5KFS7 as seed ortholog is 96%.
Bootstrap support for H3G8F4 as seed ortholog is 100%.

Group of orthologs #1210. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KK42              	100.00%		H3GBE8              	100.00%
Bootstrap support for Q5KK42 as seed ortholog is 100%.
Bootstrap support for H3GBE8 as seed ortholog is 100%.

Group of orthologs #1211. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:67

Q5KIX3              	100.00%		H3GD85              	100.00%
Bootstrap support for Q5KIX3 as seed ortholog is 99%.
Bootstrap support for H3GD85 as seed ortholog is 89%.

Group of orthologs #1212. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KF20              	100.00%		H3GIZ2              	100.00%
Bootstrap support for Q5KF20 as seed ortholog is 100%.
Bootstrap support for H3GIZ2 as seed ortholog is 100%.

Group of orthologs #1213. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.ramorum:74

Q5KLP8              	100.00%		H3GID6              	100.00%
Bootstrap support for Q5KLP8 as seed ortholog is 96%.
Bootstrap support for H3GID6 as seed ortholog is 99%.

Group of orthologs #1214. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KF27              	100.00%		H3GPP2              	100.00%
Bootstrap support for Q5KF27 as seed ortholog is 100%.
Bootstrap support for H3GPP2 as seed ortholog is 100%.

Group of orthologs #1215. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:67

P0CP98              	100.00%		H3H3F5              	100.00%
Bootstrap support for P0CP98 as seed ortholog is 100%.
Bootstrap support for H3H3F5 as seed ortholog is 82%.

Group of orthologs #1216. Best score 158 bits
Score difference with first non-orthologous sequence - C.neoformans:158 P.ramorum:158

Q5KF86              	100.00%		H3H5S3              	100.00%
Bootstrap support for Q5KF86 as seed ortholog is 100%.
Bootstrap support for H3H5S3 as seed ortholog is 100%.

Group of orthologs #1217. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.ramorum:157

Q5KH36              	100.00%		H3GAM3              	100.00%
                    	       		H3GB06              	76.41%
                    	       		H3HB96              	31.65%
                    	       		H3H2V8              	10.28%
Bootstrap support for Q5KH36 as seed ortholog is 100%.
Bootstrap support for H3GAM3 as seed ortholog is 100%.

Group of orthologs #1218. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.ramorum:12

Q5K7B1              	100.00%		H3H2T7              	100.00%
                    	       		H3GZX0              	17.25%
Bootstrap support for Q5K7B1 as seed ortholog is 100%.
Bootstrap support for H3H2T7 as seed ortholog is 61%.
Alternative seed ortholog is H3HDZ5 (12 bits away from this cluster)

Group of orthologs #1219. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:157 P.ramorum:157

Q5KKY5              	100.00%		H3GAS8              	100.00%
Bootstrap support for Q5KKY5 as seed ortholog is 100%.
Bootstrap support for H3GAS8 as seed ortholog is 100%.

Group of orthologs #1220. Best score 157 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:157

Q5KF50              	100.00%		H3GGD2              	100.00%
Bootstrap support for Q5KF50 as seed ortholog is 93%.
Bootstrap support for H3GGD2 as seed ortholog is 100%.

Group of orthologs #1221. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

Q5K762              	100.00%		H3GF34              	100.00%
Bootstrap support for Q5K762 as seed ortholog is 100%.
Bootstrap support for H3GF34 as seed ortholog is 100%.

Group of orthologs #1222. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

Q5K9U5              	100.00%		H3GHG9              	100.00%
Bootstrap support for Q5K9U5 as seed ortholog is 100%.
Bootstrap support for H3GHG9 as seed ortholog is 100%.

Group of orthologs #1223. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:53

Q5KLY7              	100.00%		H3GA95              	100.00%
Bootstrap support for Q5KLY7 as seed ortholog is 100%.
Bootstrap support for H3GA95 as seed ortholog is 85%.

Group of orthologs #1224. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

P0CM26              	100.00%		H3GS88              	100.00%
Bootstrap support for P0CM26 as seed ortholog is 100%.
Bootstrap support for H3GS88 as seed ortholog is 100%.

Group of orthologs #1225. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

P0CN52              	100.00%		H3GS44              	100.00%
Bootstrap support for P0CN52 as seed ortholog is 100%.
Bootstrap support for H3GS44 as seed ortholog is 100%.

Group of orthologs #1226. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

Q5K844              	100.00%		H3GUP5              	100.00%
Bootstrap support for Q5K844 as seed ortholog is 100%.
Bootstrap support for H3GUP5 as seed ortholog is 100%.

Group of orthologs #1227. Best score 156 bits
Score difference with first non-orthologous sequence - C.neoformans:156 P.ramorum:156

Q5KF90              	100.00%		H3GWU4              	100.00%
Bootstrap support for Q5KF90 as seed ortholog is 100%.
Bootstrap support for H3GWU4 as seed ortholog is 100%.

Group of orthologs #1228. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.ramorum:73

Q5KN90              	100.00%		H3GXG4              	100.00%
Q5KN24              	52.85%		
Bootstrap support for Q5KN90 as seed ortholog is 100%.
Bootstrap support for H3GXG4 as seed ortholog is 93%.

Group of orthologs #1229. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.ramorum:155

Q5K766              	100.00%		H3GDY8              	100.00%
Bootstrap support for Q5K766 as seed ortholog is 100%.
Bootstrap support for H3GDY8 as seed ortholog is 100%.

Group of orthologs #1230. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:59

Q5KDF7              	100.00%		H3GI19              	100.00%
Bootstrap support for Q5KDF7 as seed ortholog is 89%.
Bootstrap support for H3GI19 as seed ortholog is 93%.

Group of orthologs #1231. Best score 155 bits
Score difference with first non-orthologous sequence - C.neoformans:155 P.ramorum:155

Q5KJG1              	100.00%		H3GFZ5              	100.00%
Bootstrap support for Q5KJG1 as seed ortholog is 100%.
Bootstrap support for H3GFZ5 as seed ortholog is 100%.

Group of orthologs #1232. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:154

P0CQ06              	100.00%		H3G7S8              	100.00%
Bootstrap support for P0CQ06 as seed ortholog is 100%.
Bootstrap support for H3G7S8 as seed ortholog is 100%.

Group of orthologs #1233. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:154

P0CM82              	100.00%		H3GA08              	100.00%
Bootstrap support for P0CM82 as seed ortholog is 100%.
Bootstrap support for H3GA08 as seed ortholog is 100%.

Group of orthologs #1234. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:58

Q5KA21              	100.00%		H3G8V4              	100.00%
Bootstrap support for Q5KA21 as seed ortholog is 100%.
Bootstrap support for H3G8V4 as seed ortholog is 93%.

Group of orthologs #1235. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:154

Q5KIG9              	100.00%		H3G8V1              	100.00%
Bootstrap support for Q5KIG9 as seed ortholog is 100%.
Bootstrap support for H3G8V1 as seed ortholog is 100%.

Group of orthologs #1236. Best score 154 bits
Score difference with first non-orthologous sequence - C.neoformans:154 P.ramorum:154

Q5KAE9              	100.00%		H3GZL1              	100.00%
Bootstrap support for Q5KAE9 as seed ortholog is 100%.
Bootstrap support for H3GZL1 as seed ortholog is 100%.

Group of orthologs #1237. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:99

Q5KEM2              	100.00%		H3GDA3              	100.00%
Q5KJS3              	20.02%		
Bootstrap support for Q5KEM2 as seed ortholog is 85%.
Bootstrap support for H3GDA3 as seed ortholog is 98%.

Group of orthologs #1238. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.ramorum:88

P0CS30              	100.00%		H3G614              	100.00%
Bootstrap support for P0CS30 as seed ortholog is 97%.
Bootstrap support for H3G614 as seed ortholog is 98%.

Group of orthologs #1239. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.ramorum:153

Q5KMC4              	100.00%		H3G8Z5              	100.00%
Bootstrap support for Q5KMC4 as seed ortholog is 100%.
Bootstrap support for H3G8Z5 as seed ortholog is 100%.

Group of orthologs #1240. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.ramorum:153

Q5KNG3              	100.00%		H3GDA7              	100.00%
Bootstrap support for Q5KNG3 as seed ortholog is 100%.
Bootstrap support for H3GDA7 as seed ortholog is 100%.

Group of orthologs #1241. Best score 153 bits
Score difference with first non-orthologous sequence - C.neoformans:153 P.ramorum:153

Q5K8M4              	100.00%		H3HBG5              	100.00%
Bootstrap support for Q5K8M4 as seed ortholog is 100%.
Bootstrap support for H3HBG5 as seed ortholog is 100%.

Group of orthologs #1242. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:152

Q5KHC0              	100.00%		H3G8T6              	100.00%
                    	       		H3G8T7              	74.50%
Bootstrap support for Q5KHC0 as seed ortholog is 100%.
Bootstrap support for H3G8T6 as seed ortholog is 100%.

Group of orthologs #1243. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:152

Q5KDE1              	100.00%		H3HE95              	100.00%
                    	       		H3G597              	65.68%
Bootstrap support for Q5KDE1 as seed ortholog is 100%.
Bootstrap support for H3HE95 as seed ortholog is 100%.

Group of orthologs #1244. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:39

P0CP94              	100.00%		H3G8A5              	100.00%
Bootstrap support for P0CP94 as seed ortholog is 100%.
Bootstrap support for H3G8A5 as seed ortholog is 98%.

Group of orthologs #1245. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:152

Q5KJL6              	100.00%		H3G8P8              	100.00%
Bootstrap support for Q5KJL6 as seed ortholog is 100%.
Bootstrap support for H3G8P8 as seed ortholog is 100%.

Group of orthologs #1246. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:152

P0CL96              	100.00%		H3HB09              	100.00%
Bootstrap support for P0CL96 as seed ortholog is 100%.
Bootstrap support for H3HB09 as seed ortholog is 100%.

Group of orthologs #1247. Best score 152 bits
Score difference with first non-orthologous sequence - C.neoformans:152 P.ramorum:152

Q5KHU0              	100.00%		H3H0P3              	100.00%
Bootstrap support for Q5KHU0 as seed ortholog is 100%.
Bootstrap support for H3H0P3 as seed ortholog is 100%.

Group of orthologs #1248. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.ramorum:151

Q5KIP7              	100.00%		H3H080              	100.00%
                    	       		H3H829              	99.44%
Bootstrap support for Q5KIP7 as seed ortholog is 100%.
Bootstrap support for H3H080 as seed ortholog is 100%.

Group of orthologs #1249. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.ramorum:151

Q5KKD1              	100.00%		H3G956              	100.00%
Bootstrap support for Q5KKD1 as seed ortholog is 100%.
Bootstrap support for H3G956 as seed ortholog is 100%.

Group of orthologs #1250. Best score 151 bits
Score difference with first non-orthologous sequence - C.neoformans:151 P.ramorum:151

Q5KHZ3              	100.00%		H3GBK4              	100.00%
Bootstrap support for Q5KHZ3 as seed ortholog is 100%.
Bootstrap support for H3GBK4 as seed ortholog is 100%.

Group of orthologs #1251. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.ramorum:150

Q5KBU2              	100.00%		H3GZC5              	100.00%
Bootstrap support for Q5KBU2 as seed ortholog is 100%.
Bootstrap support for H3GZC5 as seed ortholog is 100%.

Group of orthologs #1252. Best score 150 bits
Score difference with first non-orthologous sequence - C.neoformans:150 P.ramorum:82

Q5KIA1              	100.00%		H3HBJ2              	100.00%
Bootstrap support for Q5KIA1 as seed ortholog is 100%.
Bootstrap support for H3HBJ2 as seed ortholog is 98%.

Group of orthologs #1253. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:104

Q5KFR2              	100.00%		H3G8Z6              	100.00%
Bootstrap support for Q5KFR2 as seed ortholog is 99%.
Bootstrap support for H3G8Z6 as seed ortholog is 99%.

Group of orthologs #1254. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:149

Q5KNC7              	100.00%		H3G581              	100.00%
Bootstrap support for Q5KNC7 as seed ortholog is 100%.
Bootstrap support for H3G581 as seed ortholog is 100%.

Group of orthologs #1255. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:149

P0CO56              	100.00%		H3GMF6              	100.00%
Bootstrap support for P0CO56 as seed ortholog is 100%.
Bootstrap support for H3GMF6 as seed ortholog is 100%.

Group of orthologs #1256. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:149

Q5KC23              	100.00%		H3GJD1              	100.00%
Bootstrap support for Q5KC23 as seed ortholog is 100%.
Bootstrap support for H3GJD1 as seed ortholog is 100%.

Group of orthologs #1257. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.ramorum:38

Q5KN20              	100.00%		H3GCJ5              	100.00%
Bootstrap support for Q5KN20 as seed ortholog is 54%.
Alternative seed ortholog is Q5KI63 (2 bits away from this cluster)
Bootstrap support for H3GCJ5 as seed ortholog is 83%.

Group of orthologs #1258. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:149

Q5KDI9              	100.00%		H3GWV5              	100.00%
Bootstrap support for Q5KDI9 as seed ortholog is 100%.
Bootstrap support for H3GWV5 as seed ortholog is 100%.

Group of orthologs #1259. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:100

Q5KPH8              	100.00%		H3GML2              	100.00%
Bootstrap support for Q5KPH8 as seed ortholog is 100%.
Bootstrap support for H3GML2 as seed ortholog is 95%.

Group of orthologs #1260. Best score 149 bits
Score difference with first non-orthologous sequence - C.neoformans:149 P.ramorum:149

Q5K9I0              	100.00%		H3H5Q9              	100.00%
Bootstrap support for Q5K9I0 as seed ortholog is 100%.
Bootstrap support for H3H5Q9 as seed ortholog is 100%.

Group of orthologs #1261. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:2 P.ramorum:30

Q5K6U2              	100.00%		H3GBF0              	100.00%
                    	       		H3G8N6              	7.57%
Bootstrap support for Q5K6U2 as seed ortholog is 48%.
Alternative seed ortholog is Q5KNG9 (2 bits away from this cluster)
Bootstrap support for H3GBF0 as seed ortholog is 79%.

Group of orthologs #1262. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KNH8              	100.00%		H3GEE2              	100.00%
                    	       		H3GFT0              	75.35%
Bootstrap support for Q5KNH8 as seed ortholog is 100%.
Bootstrap support for H3GEE2 as seed ortholog is 100%.

Group of orthologs #1263. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.ramorum:37

Q5KD55              	100.00%		H3HAS1              	100.00%
                    	       		H3HDE3              	9.59%
Bootstrap support for Q5KD55 as seed ortholog is 98%.
Bootstrap support for H3HAS1 as seed ortholog is 82%.

Group of orthologs #1264. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KFP2              	100.00%		H3G8U9              	100.00%
Bootstrap support for Q5KFP2 as seed ortholog is 100%.
Bootstrap support for H3G8U9 as seed ortholog is 100%.

Group of orthologs #1265. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KI13              	100.00%		H3GE91              	100.00%
Bootstrap support for Q5KI13 as seed ortholog is 100%.
Bootstrap support for H3GE91 as seed ortholog is 100%.

Group of orthologs #1266. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KHZ6              	100.00%		H3GI13              	100.00%
Bootstrap support for Q5KHZ6 as seed ortholog is 100%.
Bootstrap support for H3GI13 as seed ortholog is 100%.

Group of orthologs #1267. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

P0CP32              	100.00%		H3GWN5              	100.00%
Bootstrap support for P0CP32 as seed ortholog is 100%.
Bootstrap support for H3GWN5 as seed ortholog is 100%.

Group of orthologs #1268. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KBC4              	100.00%		H3GUX3              	100.00%
Bootstrap support for Q5KBC4 as seed ortholog is 100%.
Bootstrap support for H3GUX3 as seed ortholog is 100%.

Group of orthologs #1269. Best score 148 bits
Score difference with first non-orthologous sequence - C.neoformans:148 P.ramorum:148

Q5KPW1              	100.00%		H3GLN3              	100.00%
Bootstrap support for Q5KPW1 as seed ortholog is 100%.
Bootstrap support for H3GLN3 as seed ortholog is 100%.

Group of orthologs #1270. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:147

Q5KAU4              	100.00%		H3G8S7              	100.00%
Bootstrap support for Q5KAU4 as seed ortholog is 100%.
Bootstrap support for H3G8S7 as seed ortholog is 100%.

Group of orthologs #1271. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:147

Q5KBB0              	100.00%		H3GGY8              	100.00%
Bootstrap support for Q5KBB0 as seed ortholog is 100%.
Bootstrap support for H3GGY8 as seed ortholog is 100%.

Group of orthologs #1272. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.ramorum:69

Q5KAC3              	100.00%		H3GK99              	100.00%
Bootstrap support for Q5KAC3 as seed ortholog is 93%.
Bootstrap support for H3GK99 as seed ortholog is 94%.

Group of orthologs #1273. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:76

P0CR34              	100.00%		H3GTD3              	100.00%
Bootstrap support for P0CR34 as seed ortholog is 99%.
Bootstrap support for H3GTD3 as seed ortholog is 97%.

Group of orthologs #1274. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:147

Q5KPF9              	100.00%		H3GD20              	100.00%
Bootstrap support for Q5KPF9 as seed ortholog is 100%.
Bootstrap support for H3GD20 as seed ortholog is 100%.

Group of orthologs #1275. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:56

Q5KIG5              	100.00%		H3GK33              	100.00%
Bootstrap support for Q5KIG5 as seed ortholog is 100%.
Bootstrap support for H3GK33 as seed ortholog is 76%.

Group of orthologs #1276. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:147

P0CQ24              	100.00%		H3HDB3              	100.00%
Bootstrap support for P0CQ24 as seed ortholog is 100%.
Bootstrap support for H3HDB3 as seed ortholog is 100%.

Group of orthologs #1277. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:59

Q5KJQ2              	100.00%		H3H2N2              	100.00%
Bootstrap support for Q5KJQ2 as seed ortholog is 100%.
Bootstrap support for H3H2N2 as seed ortholog is 99%.

Group of orthologs #1278. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:102

Q5KPC0              	100.00%		H3H1L9              	100.00%
Bootstrap support for Q5KPC0 as seed ortholog is 100%.
Bootstrap support for H3H1L9 as seed ortholog is 99%.

Group of orthologs #1279. Best score 147 bits
Score difference with first non-orthologous sequence - C.neoformans:147 P.ramorum:147

Q5KQ33              	100.00%		H3HCM8              	100.00%
Bootstrap support for Q5KQ33 as seed ortholog is 100%.
Bootstrap support for H3HCM8 as seed ortholog is 100%.

Group of orthologs #1280. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

P0CS04              	100.00%		H3GKF9              	100.00%
P0CS02              	52.86%		
Bootstrap support for P0CS04 as seed ortholog is 100%.
Bootstrap support for H3GKF9 as seed ortholog is 100%.

Group of orthologs #1281. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KBG5              	100.00%		H3G8U8              	100.00%
Bootstrap support for Q5KBG5 as seed ortholog is 100%.
Bootstrap support for H3G8U8 as seed ortholog is 100%.

Group of orthologs #1282. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KL66              	100.00%		H3G6Z2              	100.00%
Bootstrap support for Q5KL66 as seed ortholog is 100%.
Bootstrap support for H3G6Z2 as seed ortholog is 100%.

Group of orthologs #1283. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KM35              	100.00%		H3GA47              	100.00%
Bootstrap support for Q5KM35 as seed ortholog is 100%.
Bootstrap support for H3GA47 as seed ortholog is 100%.

Group of orthologs #1284. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KMH2              	100.00%		H3G9X2              	100.00%
Bootstrap support for Q5KMH2 as seed ortholog is 100%.
Bootstrap support for H3G9X2 as seed ortholog is 100%.

Group of orthologs #1285. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KCY2              	100.00%		H3GXU6              	100.00%
Bootstrap support for Q5KCY2 as seed ortholog is 100%.
Bootstrap support for H3GXU6 as seed ortholog is 100%.

Group of orthologs #1286. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:146

Q5KI70              	100.00%		H3GYX6              	100.00%
Bootstrap support for Q5KI70 as seed ortholog is 97%.
Bootstrap support for H3GYX6 as seed ortholog is 100%.

Group of orthologs #1287. Best score 146 bits
Score difference with first non-orthologous sequence - C.neoformans:146 P.ramorum:146

Q5KN33              	100.00%		H3HD92              	100.00%
Bootstrap support for Q5KN33 as seed ortholog is 100%.
Bootstrap support for H3HD92 as seed ortholog is 100%.

Group of orthologs #1288. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:145

Q5K9R1              	100.00%		H3HEG5              	100.00%
                    	       		H3H5V4              	36.97%
                    	       		H3GN35              	36.08%
                    	       		H3GG96              	33.18%
                    	       		H3GU87              	24.28%
                    	       		H3H9X2              	12.69%
Bootstrap support for Q5K9R1 as seed ortholog is 100%.
Bootstrap support for H3HEG5 as seed ortholog is 100%.

Group of orthologs #1289. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:145

Q5KPM8              	100.00%		H3GA71              	100.00%
                    	       		H3G9U1              	100.00%
Bootstrap support for Q5KPM8 as seed ortholog is 100%.
Bootstrap support for H3GA71 as seed ortholog is 100%.
Bootstrap support for H3G9U1 as seed ortholog is 100%.

Group of orthologs #1290. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:98

Q5KG59              	100.00%		H3GEM1              	100.00%
Bootstrap support for Q5KG59 as seed ortholog is 100%.
Bootstrap support for H3GEM1 as seed ortholog is 99%.

Group of orthologs #1291. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:145

P0CQ12              	100.00%		H3GVF3              	100.00%
Bootstrap support for P0CQ12 as seed ortholog is 100%.
Bootstrap support for H3GVF3 as seed ortholog is 100%.

Group of orthologs #1292. Best score 145 bits
Score difference with first non-orthologous sequence - C.neoformans:145 P.ramorum:145

Q5KQ40              	100.00%		H3GXT3              	100.00%
Bootstrap support for Q5KQ40 as seed ortholog is 100%.
Bootstrap support for H3GXT3 as seed ortholog is 100%.

Group of orthologs #1293. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:46 P.ramorum:144

Q5KEM9              	10.29%		H3G9U2              	100.00%
Q5KG53              	100.00%		H3GUI8              	100.00%
Q5KLC1              	10.29%		
Q5KFZ8              	9.68%		
Bootstrap support for Q5KG53 as seed ortholog is 84%.
Bootstrap support for H3G9U2 as seed ortholog is 100%.
Bootstrap support for H3GUI8 as seed ortholog is 100%.

Group of orthologs #1294. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

P0CS66              	100.00%		H3H0U7              	100.00%
                    	       		H3HAE0              	84.13%
Bootstrap support for P0CS66 as seed ortholog is 100%.
Bootstrap support for H3H0U7 as seed ortholog is 100%.

Group of orthologs #1295. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:90 P.ramorum:144

Q5K8W2              	100.00%		H3G6M7              	100.00%
Bootstrap support for Q5K8W2 as seed ortholog is 99%.
Bootstrap support for H3G6M7 as seed ortholog is 100%.

Group of orthologs #1296. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

Q5KIW7              	100.00%		H3G9J7              	100.00%
Bootstrap support for Q5KIW7 as seed ortholog is 100%.
Bootstrap support for H3G9J7 as seed ortholog is 100%.

Group of orthologs #1297. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

Q5KM44              	100.00%		H3G7Q5              	100.00%
Bootstrap support for Q5KM44 as seed ortholog is 100%.
Bootstrap support for H3G7Q5 as seed ortholog is 100%.

Group of orthologs #1298. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

Q5KL12              	100.00%		H3GIL0              	100.00%
Bootstrap support for Q5KL12 as seed ortholog is 100%.
Bootstrap support for H3GIL0 as seed ortholog is 100%.

Group of orthologs #1299. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

Q5KDJ5              	100.00%		H3GVQ2              	100.00%
Bootstrap support for Q5KDJ5 as seed ortholog is 100%.
Bootstrap support for H3GVQ2 as seed ortholog is 100%.

Group of orthologs #1300. Best score 144 bits
Score difference with first non-orthologous sequence - C.neoformans:144 P.ramorum:144

Q5KHR8              	100.00%		H3GX22              	100.00%
Bootstrap support for Q5KHR8 as seed ortholog is 100%.
Bootstrap support for H3GX22 as seed ortholog is 100%.

Group of orthologs #1301. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.ramorum:143

Q5K6Z0              	100.00%		H3G8X7              	100.00%
Bootstrap support for Q5K6Z0 as seed ortholog is 100%.
Bootstrap support for H3G8X7 as seed ortholog is 100%.

Group of orthologs #1302. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.ramorum:143

Q5KIF5              	100.00%		H3GVF5              	100.00%
Bootstrap support for Q5KIF5 as seed ortholog is 100%.
Bootstrap support for H3GVF5 as seed ortholog is 100%.

Group of orthologs #1303. Best score 143 bits
Score difference with first non-orthologous sequence - C.neoformans:143 P.ramorum:143

Q5KME8              	100.00%		H3H1L7              	100.00%
Bootstrap support for Q5KME8 as seed ortholog is 100%.
Bootstrap support for H3H1L7 as seed ortholog is 100%.

Group of orthologs #1304. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:142

Q5K8Y6              	100.00%		H3GH72              	100.00%
Bootstrap support for Q5K8Y6 as seed ortholog is 100%.
Bootstrap support for H3GH72 as seed ortholog is 100%.

Group of orthologs #1305. Best score 142 bits
Score difference with first non-orthologous sequence - C.neoformans:142 P.ramorum:142

Q5KBB3              	100.00%		H3GNV0              	100.00%
Bootstrap support for Q5KBB3 as seed ortholog is 100%.
Bootstrap support for H3GNV0 as seed ortholog is 100%.

Group of orthologs #1306. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.ramorum:141

Q5KFL8              	100.00%		H3GKG5              	100.00%
Q5KLI6              	6.26%		H3GKL9              	32.35%
                    	       		H3GKM0              	31.91%
                    	       		H3GKM2              	25.68%
                    	       		H3GQH3              	22.84%
                    	       		H3GQH4              	22.40%
                    	       		H3GWE6              	22.30%
                    	       		H3GES5              	21.31%
                    	       		H3GES4              	21.20%
                    	       		H3GQJ1              	20.00%
                    	       		H3GRJ9              	19.67%
                    	       		H3GMY9              	19.45%
                    	       		H3GAC8              	18.91%
                    	       		H3GGY6              	18.36%
                    	       		H3GRJ4              	17.16%
                    	       		H3GRK0              	16.72%
                    	       		H3H7A8              	15.85%
                    	       		H3GGY5              	15.74%
                    	       		H3GKY4              	15.63%
                    	       		H3GBW0              	14.86%
                    	       		H3H0D6              	7.76%
Bootstrap support for Q5KFL8 as seed ortholog is 100%.
Bootstrap support for H3GKG5 as seed ortholog is 100%.

Group of orthologs #1307. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.ramorum:141

P0CM76              	100.00%		H3GV05              	100.00%
Bootstrap support for P0CM76 as seed ortholog is 100%.
Bootstrap support for H3GV05 as seed ortholog is 100%.

Group of orthologs #1308. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.ramorum:141

Q5KJ67              	100.00%		H3GR19              	100.00%
Bootstrap support for Q5KJ67 as seed ortholog is 100%.
Bootstrap support for H3GR19 as seed ortholog is 100%.

Group of orthologs #1309. Best score 141 bits
Score difference with first non-orthologous sequence - C.neoformans:141 P.ramorum:47

Q5KK88              	100.00%		H3HC79              	100.00%
Bootstrap support for Q5KK88 as seed ortholog is 100%.
Bootstrap support for H3HC79 as seed ortholog is 89%.

Group of orthologs #1310. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:6 P.ramorum:1

Q5KFY6              	100.00%		H3H2F1              	100.00%
                    	       		H3HE84              	30.51%
                    	       		H3HCX1              	27.12%
                    	       		H3GC05              	7.65%
Bootstrap support for Q5KFY6 as seed ortholog is 54%.
Alternative seed ortholog is Q5KF12 (6 bits away from this cluster)
Bootstrap support for H3H2F1 as seed ortholog is 62%.
Alternative seed ortholog is H3H377 (1 bits away from this cluster)

Group of orthologs #1311. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:19 P.ramorum:49

Q5KBE3              	100.00%		H3GGZ3              	100.00%
Bootstrap support for Q5KBE3 as seed ortholog is 89%.
Bootstrap support for H3GGZ3 as seed ortholog is 89%.

Group of orthologs #1312. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.ramorum:140

Q5KCC1              	100.00%		H3H1C0              	100.00%
Bootstrap support for Q5KCC1 as seed ortholog is 100%.
Bootstrap support for H3H1C0 as seed ortholog is 100%.

Group of orthologs #1313. Best score 140 bits
Score difference with first non-orthologous sequence - C.neoformans:140 P.ramorum:140

Q5KPS6              	100.00%		H3HCK3              	100.00%
Bootstrap support for Q5KPS6 as seed ortholog is 100%.
Bootstrap support for H3HCK3 as seed ortholog is 100%.

Group of orthologs #1314. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:139

Q5KLP3              	100.00%		H3G6Y3              	100.00%
Bootstrap support for Q5KLP3 as seed ortholog is 100%.
Bootstrap support for H3G6Y3 as seed ortholog is 100%.

Group of orthologs #1315. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:139

Q5KK99              	100.00%		H3GAE0              	100.00%
Bootstrap support for Q5KK99 as seed ortholog is 100%.
Bootstrap support for H3GAE0 as seed ortholog is 100%.

Group of orthologs #1316. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:139

Q5KLM0              	100.00%		H3GGV9              	100.00%
Bootstrap support for Q5KLM0 as seed ortholog is 100%.
Bootstrap support for H3GGV9 as seed ortholog is 100%.

Group of orthologs #1317. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:139

Q5KJ52              	100.00%		H3GWK6              	100.00%
Bootstrap support for Q5KJ52 as seed ortholog is 100%.
Bootstrap support for H3GWK6 as seed ortholog is 100%.

Group of orthologs #1318. Best score 139 bits
Score difference with first non-orthologous sequence - C.neoformans:139 P.ramorum:139

Q5KLS1              	100.00%		H3HD18              	100.00%
Bootstrap support for Q5KLS1 as seed ortholog is 100%.
Bootstrap support for H3HD18 as seed ortholog is 100%.

Group of orthologs #1319. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:26 P.ramorum:138

Q5KC39              	100.00%		H3GHL4              	100.00%
Q5KNX2              	6.68%		H3GR24              	51.43%
Q5KLY3              	6.07%		H3GHL5              	49.84%
                    	       		H3GHL6              	47.93%
                    	       		H3H3A1              	46.50%
Bootstrap support for Q5KC39 as seed ortholog is 71%.
Alternative seed ortholog is Q5KK20 (26 bits away from this cluster)
Bootstrap support for H3GHL4 as seed ortholog is 100%.

Group of orthologs #1320. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:48

Q5KLZ1              	100.00%		H3H0U6              	100.00%
Q5K856              	8.14%		
Bootstrap support for Q5KLZ1 as seed ortholog is 100%.
Bootstrap support for H3H0U6 as seed ortholog is 90%.

Group of orthologs #1321. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KIH4              	100.00%		H3G808              	100.00%
Bootstrap support for Q5KIH4 as seed ortholog is 100%.
Bootstrap support for H3G808 as seed ortholog is 100%.

Group of orthologs #1322. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KL56              	100.00%		H3G703              	100.00%
Bootstrap support for Q5KL56 as seed ortholog is 100%.
Bootstrap support for H3G703 as seed ortholog is 100%.

Group of orthologs #1323. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KDQ5              	100.00%		H3GMC3              	100.00%
Bootstrap support for Q5KDQ5 as seed ortholog is 100%.
Bootstrap support for H3GMC3 as seed ortholog is 100%.

Group of orthologs #1324. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KH21              	100.00%		H3GM15              	100.00%
Bootstrap support for Q5KH21 as seed ortholog is 100%.
Bootstrap support for H3GM15 as seed ortholog is 100%.

Group of orthologs #1325. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:16

Q5KNY9              	100.00%		H3GFX9              	100.00%
Bootstrap support for Q5KNY9 as seed ortholog is 99%.
Bootstrap support for H3GFX9 as seed ortholog is 68%.
Alternative seed ortholog is H3GBW3 (16 bits away from this cluster)

Group of orthologs #1326. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KFB9              	100.00%		H3GQP5              	100.00%
Bootstrap support for Q5KFB9 as seed ortholog is 100%.
Bootstrap support for H3GQP5 as seed ortholog is 100%.

Group of orthologs #1327. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KAD8              	100.00%		H3GY72              	100.00%
Bootstrap support for Q5KAD8 as seed ortholog is 100%.
Bootstrap support for H3GY72 as seed ortholog is 100%.

Group of orthologs #1328. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KN65              	100.00%		H3GNV2              	100.00%
Bootstrap support for Q5KN65 as seed ortholog is 100%.
Bootstrap support for H3GNV2 as seed ortholog is 100%.

Group of orthologs #1329. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KI04              	100.00%		H3GV42              	100.00%
Bootstrap support for Q5KI04 as seed ortholog is 100%.
Bootstrap support for H3GV42 as seed ortholog is 100%.

Group of orthologs #1330. Best score 138 bits
Score difference with first non-orthologous sequence - C.neoformans:138 P.ramorum:138

Q5KI73              	100.00%		H3H6K8              	100.00%
Bootstrap support for Q5KI73 as seed ortholog is 100%.
Bootstrap support for H3H6K8 as seed ortholog is 100%.

Group of orthologs #1331. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.ramorum:137

Q5KGZ8              	100.00%		H3G8H6              	100.00%
Bootstrap support for Q5KGZ8 as seed ortholog is 100%.
Bootstrap support for H3G8H6 as seed ortholog is 100%.

Group of orthologs #1332. Best score 137 bits
Score difference with first non-orthologous sequence - C.neoformans:137 P.ramorum:137

Q5KLQ8              	100.00%		H3GAE3              	100.00%
Bootstrap support for Q5KLQ8 as seed ortholog is 100%.
Bootstrap support for H3GAE3 as seed ortholog is 100%.

Group of orthologs #1333. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KNP8              	100.00%		H3G906              	100.00%
                    	       		H3GJP0              	52.17%
                    	       		H3GJN4              	49.59%
                    	       		H3GJN3              	48.78%
                    	       		H3GJN5              	46.21%
                    	       		H3GMN4              	16.53%
Bootstrap support for Q5KNP8 as seed ortholog is 100%.
Bootstrap support for H3G906 as seed ortholog is 100%.

Group of orthologs #1334. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KG49              	100.00%		H3G771              	100.00%
Q5KG50              	35.42%		
Bootstrap support for Q5KG49 as seed ortholog is 100%.
Bootstrap support for H3G771 as seed ortholog is 100%.

Group of orthologs #1335. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:38

Q5KFU4              	100.00%		H3GHZ1              	100.00%
                    	       		H3GCV3              	56.72%
Bootstrap support for Q5KFU4 as seed ortholog is 100%.
Bootstrap support for H3GHZ1 as seed ortholog is 87%.

Group of orthologs #1336. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:3

Q5KAF9              	100.00%		H3GSJ8              	100.00%
                    	       		H3GIK8              	10.04%
Bootstrap support for Q5KAF9 as seed ortholog is 100%.
Bootstrap support for H3GSJ8 as seed ortholog is 54%.
Alternative seed ortholog is H3H377 (3 bits away from this cluster)

Group of orthologs #1337. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KFS4              	100.00%		H3G6N6              	100.00%
Bootstrap support for Q5KFS4 as seed ortholog is 100%.
Bootstrap support for H3G6N6 as seed ortholog is 100%.

Group of orthologs #1338. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KG94              	100.00%		H3GDZ4              	100.00%
Bootstrap support for Q5KG94 as seed ortholog is 100%.
Bootstrap support for H3GDZ4 as seed ortholog is 100%.

Group of orthologs #1339. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:71

Q5KGP8              	100.00%		H3GE52              	100.00%
Bootstrap support for Q5KGP8 as seed ortholog is 100%.
Bootstrap support for H3GE52 as seed ortholog is 98%.

Group of orthologs #1340. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KMF3              	100.00%		H3G9B7              	100.00%
Bootstrap support for Q5KMF3 as seed ortholog is 100%.
Bootstrap support for H3G9B7 as seed ortholog is 100%.

Group of orthologs #1341. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:136

Q5KFB3              	100.00%		H3GWS0              	100.00%
Bootstrap support for Q5KFB3 as seed ortholog is 100%.
Bootstrap support for H3GWS0 as seed ortholog is 100%.

Group of orthologs #1342. Best score 136 bits
Score difference with first non-orthologous sequence - C.neoformans:136 P.ramorum:35

Q5KP88              	100.00%		H3GUR5              	100.00%
Bootstrap support for Q5KP88 as seed ortholog is 100%.
Bootstrap support for H3GUR5 as seed ortholog is 80%.

Group of orthologs #1343. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:37 P.ramorum:135

Q5KIZ5              	100.00%		H3GH98              	100.00%
Bootstrap support for Q5KIZ5 as seed ortholog is 81%.
Bootstrap support for H3GH98 as seed ortholog is 100%.

Group of orthologs #1344. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:135 P.ramorum:135

Q5KKQ0              	100.00%		H3GU37              	100.00%
Bootstrap support for Q5KKQ0 as seed ortholog is 100%.
Bootstrap support for H3GU37 as seed ortholog is 100%.

Group of orthologs #1345. Best score 135 bits
Score difference with first non-orthologous sequence - C.neoformans:22 P.ramorum:135

Q5KLT0              	100.00%		H3GXB8              	100.00%
Bootstrap support for Q5KLT0 as seed ortholog is 73%.
Alternative seed ortholog is Q5KG37 (22 bits away from this cluster)
Bootstrap support for H3GXB8 as seed ortholog is 100%.

Group of orthologs #1346. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KFI3              	100.00%		H3G850              	100.00%
Bootstrap support for Q5KFI3 as seed ortholog is 100%.
Bootstrap support for H3G850 as seed ortholog is 100%.

Group of orthologs #1347. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KEF1              	100.00%		H3G9I1              	100.00%
Bootstrap support for Q5KEF1 as seed ortholog is 100%.
Bootstrap support for H3G9I1 as seed ortholog is 100%.

Group of orthologs #1348. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:80

Q5KIK8              	100.00%		H3G849              	100.00%
Bootstrap support for Q5KIK8 as seed ortholog is 100%.
Bootstrap support for H3G849 as seed ortholog is 99%.

Group of orthologs #1349. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KHQ9              	100.00%		H3GAM8              	100.00%
Bootstrap support for Q5KHQ9 as seed ortholog is 100%.
Bootstrap support for H3GAM8 as seed ortholog is 100%.

Group of orthologs #1350. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.ramorum:134

Q5KCQ4              	100.00%		H3GHC2              	100.00%
Bootstrap support for Q5KCQ4 as seed ortholog is 85%.
Bootstrap support for H3GHC2 as seed ortholog is 100%.

Group of orthologs #1351. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KJ91              	100.00%		H3GCK6              	100.00%
Bootstrap support for Q5KJ91 as seed ortholog is 100%.
Bootstrap support for H3GCK6 as seed ortholog is 100%.

Group of orthologs #1352. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KN73              	100.00%		H3G946              	100.00%
Bootstrap support for Q5KN73 as seed ortholog is 100%.
Bootstrap support for H3G946 as seed ortholog is 100%.

Group of orthologs #1353. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:11

Q5KJT6              	100.00%		H3GEB7              	100.00%
Bootstrap support for Q5KJT6 as seed ortholog is 100%.
Bootstrap support for H3GEB7 as seed ortholog is 36%.
Alternative seed ortholog is H3G5J8 (11 bits away from this cluster)

Group of orthologs #1354. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5K7B2              	100.00%		H3GZT3              	100.00%
Bootstrap support for Q5K7B2 as seed ortholog is 100%.
Bootstrap support for H3GZT3 as seed ortholog is 100%.

Group of orthologs #1355. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:14 P.ramorum:30

Q5KGB5              	100.00%		H3GRN0              	100.00%
Bootstrap support for Q5KGB5 as seed ortholog is 71%.
Alternative seed ortholog is Q5K880 (14 bits away from this cluster)
Bootstrap support for H3GRN0 as seed ortholog is 91%.

Group of orthologs #1356. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:26

Q5KG95              	100.00%		H3GVN3              	100.00%
Bootstrap support for Q5KG95 as seed ortholog is 100%.
Bootstrap support for H3GVN3 as seed ortholog is 74%.
Alternative seed ortholog is H3GV86 (26 bits away from this cluster)

Group of orthologs #1357. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KK34              	100.00%		H3H369              	100.00%
Bootstrap support for Q5KK34 as seed ortholog is 100%.
Bootstrap support for H3H369 as seed ortholog is 100%.

Group of orthologs #1358. Best score 134 bits
Score difference with first non-orthologous sequence - C.neoformans:134 P.ramorum:134

Q5KCL9              	100.00%		H3HAQ8              	100.00%
Bootstrap support for Q5KCL9 as seed ortholog is 100%.
Bootstrap support for H3HAQ8 as seed ortholog is 100%.

Group of orthologs #1359. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.ramorum:133

Q5KL83              	100.00%		H3H3Y5              	100.00%
                    	       		H3GEH0              	5.90%
                    	       		H3GYJ3              	5.16%
Bootstrap support for Q5KL83 as seed ortholog is 100%.
Bootstrap support for H3H3Y5 as seed ortholog is 100%.

Group of orthologs #1360. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.ramorum:133

Q5KE19              	100.00%		H3G9X3              	100.00%
Bootstrap support for Q5KE19 as seed ortholog is 100%.
Bootstrap support for H3G9X3 as seed ortholog is 100%.

Group of orthologs #1361. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.ramorum:133

Q5KIS6              	100.00%		H3GMU6              	100.00%
Bootstrap support for Q5KIS6 as seed ortholog is 90%.
Bootstrap support for H3GMU6 as seed ortholog is 100%.

Group of orthologs #1362. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.ramorum:133

Q5KBI4              	100.00%		H3GV00              	100.00%
Bootstrap support for Q5KBI4 as seed ortholog is 100%.
Bootstrap support for H3GV00 as seed ortholog is 100%.

Group of orthologs #1363. Best score 133 bits
Score difference with first non-orthologous sequence - C.neoformans:133 P.ramorum:133

Q5KJ57              	100.00%		H3GW59              	100.00%
Bootstrap support for Q5KJ57 as seed ortholog is 100%.
Bootstrap support for H3GW59 as seed ortholog is 100%.

Group of orthologs #1364. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:132

Q5K8L2              	100.00%		H3GBA3              	100.00%
                    	       		H3GHJ3              	100.00%
                    	       		H3G8M0              	31.27%
                    	       		H3G9G3              	20.79%
                    	       		H3G9M9              	19.48%
                    	       		H3G8Z3              	18.33%
                    	       		H3GB66              	16.48%
                    	       		H3GJP2              	10.86%
Bootstrap support for Q5K8L2 as seed ortholog is 98%.
Bootstrap support for H3GBA3 as seed ortholog is 100%.
Bootstrap support for H3GHJ3 as seed ortholog is 100%.

Group of orthologs #1365. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:132

P0CP72              	100.00%		H3HA61              	100.00%
                    	       		H3GJN2              	99.02%
Bootstrap support for P0CP72 as seed ortholog is 100%.
Bootstrap support for H3HA61 as seed ortholog is 100%.

Group of orthologs #1366. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:132

Q5KBQ4              	100.00%		H3G548              	100.00%
Bootstrap support for Q5KBQ4 as seed ortholog is 100%.
Bootstrap support for H3G548 as seed ortholog is 100%.

Group of orthologs #1367. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:132

Q5KI23              	100.00%		H3GAN1              	100.00%
Bootstrap support for Q5KI23 as seed ortholog is 100%.
Bootstrap support for H3GAN1 as seed ortholog is 100%.

Group of orthologs #1368. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:132

Q5KA76              	100.00%		H3GIE0              	100.00%
Bootstrap support for Q5KA76 as seed ortholog is 100%.
Bootstrap support for H3GIE0 as seed ortholog is 100%.

Group of orthologs #1369. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:132 P.ramorum:132

P0CS54              	100.00%		H3GU14              	100.00%
Bootstrap support for P0CS54 as seed ortholog is 100%.
Bootstrap support for H3GU14 as seed ortholog is 100%.

Group of orthologs #1370. Best score 132 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:38

Q5KNQ9              	100.00%		H3GYP8              	100.00%
Bootstrap support for Q5KNQ9 as seed ortholog is 93%.
Bootstrap support for H3GYP8 as seed ortholog is 79%.

Group of orthologs #1371. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.ramorum:131

Q5KM24              	100.00%		H3GDV6              	100.00%
                    	       		H3G5H6              	31.55%
                    	       		H3G5H5              	20.54%
Bootstrap support for Q5KM24 as seed ortholog is 100%.
Bootstrap support for H3GDV6 as seed ortholog is 100%.

Group of orthologs #1372. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.ramorum:131

Q5KDF1              	100.00%		H3G8G5              	100.00%
                    	       		H3G8G4              	46.52%
Bootstrap support for Q5KDF1 as seed ortholog is 100%.
Bootstrap support for H3G8G5 as seed ortholog is 100%.

Group of orthologs #1373. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.ramorum:131

Q5KM60              	100.00%		H3GA64              	100.00%
Bootstrap support for Q5KM60 as seed ortholog is 100%.
Bootstrap support for H3GA64 as seed ortholog is 100%.

Group of orthologs #1374. Best score 131 bits
Score difference with first non-orthologous sequence - C.neoformans:131 P.ramorum:131

Q5KPB1              	100.00%		H3GNQ5              	100.00%
Bootstrap support for Q5KPB1 as seed ortholog is 100%.
Bootstrap support for H3GNQ5 as seed ortholog is 100%.

Group of orthologs #1375. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:37

Q5K6U3              	100.00%		H3GJM9              	100.00%
                    	       		H3GJN0              	59.74%
                    	       		H3HBS7              	48.51%
                    	       		H3GW29              	38.72%
                    	       		H3GW30              	38.61%
                    	       		H3H0M3              	22.00%
                    	       		H3GZ93              	20.24%
                    	       		H3H0M9              	19.69%
Bootstrap support for Q5K6U3 as seed ortholog is 100%.
Bootstrap support for H3GJM9 as seed ortholog is 79%.

Group of orthologs #1376. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:130

P0CM98              	100.00%		H3GBU5              	100.00%
Bootstrap support for P0CM98 as seed ortholog is 100%.
Bootstrap support for H3GBU5 as seed ortholog is 100%.

Group of orthologs #1377. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:130

Q5KCP3              	100.00%		H3G5I3              	100.00%
Bootstrap support for Q5KCP3 as seed ortholog is 100%.
Bootstrap support for H3G5I3 as seed ortholog is 100%.

Group of orthologs #1378. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:84

Q5KFJ2              	100.00%		H3GCD0              	100.00%
Bootstrap support for Q5KFJ2 as seed ortholog is 100%.
Bootstrap support for H3GCD0 as seed ortholog is 98%.

Group of orthologs #1379. Best score 130 bits
Score difference with first non-orthologous sequence - C.neoformans:130 P.ramorum:130

Q5KBD9              	100.00%		H3GWY0              	100.00%
Bootstrap support for Q5KBD9 as seed ortholog is 100%.
Bootstrap support for H3GWY0 as seed ortholog is 100%.

Group of orthologs #1380. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:129

Q5KGK8              	100.00%		H3G7X5              	100.00%
Bootstrap support for Q5KGK8 as seed ortholog is 99%.
Bootstrap support for H3G7X5 as seed ortholog is 100%.

Group of orthologs #1381. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.ramorum:129

Q5KG24              	100.00%		H3GMV0              	100.00%
Bootstrap support for Q5KG24 as seed ortholog is 100%.
Bootstrap support for H3GMV0 as seed ortholog is 100%.

Group of orthologs #1382. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:4

Q5KJG2              	100.00%		H3GK35              	100.00%
Bootstrap support for Q5KJG2 as seed ortholog is 96%.
Bootstrap support for H3GK35 as seed ortholog is 54%.
Alternative seed ortholog is H3GCZ4 (4 bits away from this cluster)

Group of orthologs #1383. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.ramorum:129

P0CR54              	100.00%		H3H4G3              	100.00%
Bootstrap support for P0CR54 as seed ortholog is 100%.
Bootstrap support for H3H4G3 as seed ortholog is 100%.

Group of orthologs #1384. Best score 129 bits
Score difference with first non-orthologous sequence - C.neoformans:129 P.ramorum:129

Q5KIW3              	100.00%		H3GTZ6              	100.00%
Bootstrap support for Q5KIW3 as seed ortholog is 100%.
Bootstrap support for H3GTZ6 as seed ortholog is 100%.

Group of orthologs #1385. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:31

Q5KHB8              	100.00%		H3GIS8              	100.00%
Q5K7D6              	100.00%		H3G551              	100.00%
Bootstrap support for Q5KHB8 as seed ortholog is 100%.
Bootstrap support for Q5K7D6 as seed ortholog is 100%.
Bootstrap support for H3GIS8 as seed ortholog is 88%.
Bootstrap support for H3G551 as seed ortholog is 68%.
Alternative seed ortholog is H3G512 (31 bits away from this cluster)

Group of orthologs #1386. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:54

Q5KB49              	100.00%		H3GQW7              	100.00%
                    	       		H3GQW8              	28.00%
                    	       		H3GQW5              	10.00%
Bootstrap support for Q5KB49 as seed ortholog is 100%.
Bootstrap support for H3GQW7 as seed ortholog is 99%.

Group of orthologs #1387. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:35 P.ramorum:36

Q5KES1              	100.00%		H3GA70              	100.00%
                    	       		H3GM06              	22.00%
Bootstrap support for Q5KES1 as seed ortholog is 65%.
Alternative seed ortholog is Q5K6W0 (35 bits away from this cluster)
Bootstrap support for H3GA70 as seed ortholog is 72%.
Alternative seed ortholog is H3H338 (36 bits away from this cluster)

Group of orthologs #1388. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.ramorum:128

Q5K889              	100.00%		H3GK11              	100.00%
                    	       		H3HB48              	15.71%
Bootstrap support for Q5K889 as seed ortholog is 99%.
Bootstrap support for H3GK11 as seed ortholog is 100%.

Group of orthologs #1389. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:67

Q5KJB4              	100.00%		H3GE17              	100.00%
                    	       		H3HBB0              	27.91%
Bootstrap support for Q5KJB4 as seed ortholog is 100%.
Bootstrap support for H3GE17 as seed ortholog is 96%.

Group of orthologs #1390. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KLK6              	100.00%		H3HD62              	100.00%
                    	       		H3G5A3              	92.65%
Bootstrap support for Q5KLK6 as seed ortholog is 100%.
Bootstrap support for H3HD62 as seed ortholog is 100%.

Group of orthologs #1391. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KE79              	100.00%		H3GG19              	100.00%
Bootstrap support for Q5KE79 as seed ortholog is 100%.
Bootstrap support for H3GG19 as seed ortholog is 100%.

Group of orthologs #1392. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KGZ7              	100.00%		H3GHZ3              	100.00%
Bootstrap support for Q5KGZ7 as seed ortholog is 100%.
Bootstrap support for H3GHZ3 as seed ortholog is 100%.

Group of orthologs #1393. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.ramorum:32

Q5KEP7              	100.00%		H3GSC6              	100.00%
Bootstrap support for Q5KEP7 as seed ortholog is 87%.
Bootstrap support for H3GSC6 as seed ortholog is 80%.

Group of orthologs #1394. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KBE4              	100.00%		H3H5G1              	100.00%
Bootstrap support for Q5KBE4 as seed ortholog is 100%.
Bootstrap support for H3H5G1 as seed ortholog is 100%.

Group of orthologs #1395. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KIK2              	100.00%		H3HBE3              	100.00%
Bootstrap support for Q5KIK2 as seed ortholog is 100%.
Bootstrap support for H3HBE3 as seed ortholog is 100%.

Group of orthologs #1396. Best score 128 bits
Score difference with first non-orthologous sequence - C.neoformans:128 P.ramorum:128

Q5KK19              	100.00%		H3HBY4              	100.00%
Bootstrap support for Q5KK19 as seed ortholog is 100%.
Bootstrap support for H3HBY4 as seed ortholog is 100%.

Group of orthologs #1397. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:127

Q5K8R0              	100.00%		H3GIF5              	100.00%
                    	       		H3GCD9              	9.86%
Bootstrap support for Q5K8R0 as seed ortholog is 85%.
Bootstrap support for H3GIF5 as seed ortholog is 100%.

Group of orthologs #1398. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.ramorum:127

Q5KC07              	100.00%		H3H5P8              	100.00%
                    	       		H3H0H4              	75.76%
Bootstrap support for Q5KC07 as seed ortholog is 100%.
Bootstrap support for H3H5P8 as seed ortholog is 100%.

Group of orthologs #1399. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:64

Q5KHU8              	100.00%		H3G796              	100.00%
Bootstrap support for Q5KHU8 as seed ortholog is 94%.
Bootstrap support for H3G796 as seed ortholog is 96%.

Group of orthologs #1400. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.ramorum:127

Q5KFY5              	100.00%		H3GSB4              	100.00%
Bootstrap support for Q5KFY5 as seed ortholog is 100%.
Bootstrap support for H3GSB4 as seed ortholog is 100%.

Group of orthologs #1401. Best score 127 bits
Score difference with first non-orthologous sequence - C.neoformans:127 P.ramorum:127

Q5KHN0              	100.00%		H3GXW9              	100.00%
Bootstrap support for Q5KHN0 as seed ortholog is 100%.
Bootstrap support for H3GXW9 as seed ortholog is 100%.

Group of orthologs #1402. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:17

Q5K8W9              	100.00%		H3G6Z7              	100.00%
                    	       		H3GB69              	98.21%
                    	       		H3GB17              	95.82%
                    	       		H3G557              	90.15%
                    	       		H3G9W5              	78.21%
                    	       		H3GB72              	70.15%
                    	       		H3HAK2              	69.25%
                    	       		H3G507              	58.81%
                    	       		H3GLJ8              	53.43%
                    	       		H3G810              	35.52%
                    	       		H3GAU2              	34.93%
                    	       		H3G5F6              	34.33%
                    	       		H3GB98              	34.03%
                    	       		H3HA51              	34.03%
                    	       		H3GB71              	34.03%
                    	       		H3HAK5              	32.54%
                    	       		H3GB36              	31.94%
                    	       		H3G656              	31.94%
                    	       		H3GB91              	30.75%
                    	       		H3G5H9              	24.78%
                    	       		H3GAW9              	24.78%
                    	       		H3GB53              	24.18%
                    	       		H3GAY4              	23.58%
                    	       		H3G8C4              	22.99%
                    	       		H3GAW7              	22.69%
                    	       		H3GB84              	22.69%
                    	       		H3GBA8              	22.69%
                    	       		H3GB42              	22.39%
                    	       		H3GB85              	22.39%
                    	       		H3H949              	22.09%
                    	       		H3G5P0              	22.09%
                    	       		H3G5P4              	22.09%
                    	       		H3GB77              	22.09%
                    	       		H3G833              	21.79%
                    	       		H3G564              	21.49%
                    	       		H3GB40              	21.19%
                    	       		H3G5U1              	20.60%
                    	       		H3H9T1              	20.00%
                    	       		H3G598              	19.70%
                    	       		H3GEX3              	19.40%
                    	       		H3G5T8              	19.40%
                    	       		H3G5T9              	18.51%
                    	       		H3H5K8              	18.51%
                    	       		H3G7U8              	18.51%
                    	       		H3GAX0              	17.91%
                    	       		H3GB88              	17.61%
                    	       		H3GB08              	17.01%
                    	       		H3GB87              	17.01%
                    	       		H3GB89              	17.01%
                    	       		H3GZJ4              	16.72%
                    	       		H3G5S3              	16.42%
                    	       		H3G615              	16.42%
                    	       		H3G6B4              	16.12%
                    	       		H3H977              	16.12%
                    	       		H3G6H4              	15.52%
                    	       		H3G6J4              	14.33%
                    	       		H3G6A9              	13.73%
                    	       		H3GB31              	11.64%
                    	       		H3G9K0              	9.85%
                    	       		H3HA08              	9.55%
                    	       		H3H8C7              	8.96%
                    	       		H3H8R6              	8.96%
                    	       		H3GN88              	8.06%
                    	       		H3H8M0              	8.06%
                    	       		H3H9X3              	8.06%
                    	       		H3G6C9              	7.16%
Bootstrap support for Q5K8W9 as seed ortholog is 100%.
Bootstrap support for H3G6Z7 as seed ortholog is 79%.

Group of orthologs #1403. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5K7M5              	100.00%		H3GY13              	100.00%
                    	       		H3GWB9              	21.09%
                    	       		H3GR67              	15.65%
                    	       		H3GL89              	15.52%
Bootstrap support for Q5K7M5 as seed ortholog is 100%.
Bootstrap support for H3GY13 as seed ortholog is 100%.

Group of orthologs #1404. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5KEC8              	100.00%		H3G610              	100.00%
Bootstrap support for Q5KEC8 as seed ortholog is 100%.
Bootstrap support for H3G610 as seed ortholog is 100%.

Group of orthologs #1405. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5KJW6              	100.00%		H3G5G4              	100.00%
Bootstrap support for Q5KJW6 as seed ortholog is 100%.
Bootstrap support for H3G5G4 as seed ortholog is 100%.

Group of orthologs #1406. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5KFQ2              	100.00%		H3GBQ0              	100.00%
Bootstrap support for Q5KFQ2 as seed ortholog is 100%.
Bootstrap support for H3GBQ0 as seed ortholog is 100%.

Group of orthologs #1407. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:73

Q5KNM8              	100.00%		H3G9V1              	100.00%
Bootstrap support for Q5KNM8 as seed ortholog is 100%.
Bootstrap support for H3G9V1 as seed ortholog is 99%.

Group of orthologs #1408. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:126

Q5KGC6              	100.00%		H3GHS0              	100.00%
Bootstrap support for Q5KGC6 as seed ortholog is 98%.
Bootstrap support for H3GHS0 as seed ortholog is 100%.

Group of orthologs #1409. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5KG47              	100.00%		H3GJU1              	100.00%
Bootstrap support for Q5KG47 as seed ortholog is 100%.
Bootstrap support for H3GJU1 as seed ortholog is 100%.

Group of orthologs #1410. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:68

P0CR62              	100.00%		H3GU33              	100.00%
Bootstrap support for P0CR62 as seed ortholog is 87%.
Bootstrap support for H3GU33 as seed ortholog is 98%.

Group of orthologs #1411. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:126 P.ramorum:126

Q5KH70              	100.00%		H3GLC6              	100.00%
Bootstrap support for Q5KH70 as seed ortholog is 100%.
Bootstrap support for H3GLC6 as seed ortholog is 100%.

Group of orthologs #1412. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.ramorum:126

Q5KMG9              	100.00%		H3GJ86              	100.00%
Bootstrap support for Q5KMG9 as seed ortholog is 94%.
Bootstrap support for H3GJ86 as seed ortholog is 100%.

Group of orthologs #1413. Best score 126 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:41

Q5KDN6              	100.00%		H3H1C7              	100.00%
Bootstrap support for Q5KDN6 as seed ortholog is 86%.
Bootstrap support for H3H1C7 as seed ortholog is 80%.

Group of orthologs #1414. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:36 P.ramorum:125

Q5K752              	100.00%		H3GEV2              	100.00%
Q5KMP4              	100.00%		
Bootstrap support for Q5K752 as seed ortholog is 77%.
Bootstrap support for Q5KMP4 as seed ortholog is 92%.
Bootstrap support for H3GEV2 as seed ortholog is 100%.

Group of orthologs #1415. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KGT6              	100.00%		H3GLK4              	100.00%
                    	       		H3GLK2              	45.52%
Bootstrap support for Q5KGT6 as seed ortholog is 100%.
Bootstrap support for H3GLK4 as seed ortholog is 100%.

Group of orthologs #1416. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KE38              	100.00%		H3GKK2              	100.00%
Bootstrap support for Q5KE38 as seed ortholog is 100%.
Bootstrap support for H3GKK2 as seed ortholog is 100%.

Group of orthologs #1417. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KP45              	100.00%		H3GCK2              	100.00%
Bootstrap support for Q5KP45 as seed ortholog is 100%.
Bootstrap support for H3GCK2 as seed ortholog is 100%.

Group of orthologs #1418. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KKT8              	100.00%		H3GNM2              	100.00%
Bootstrap support for Q5KKT8 as seed ortholog is 100%.
Bootstrap support for H3GNM2 as seed ortholog is 100%.

Group of orthologs #1419. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KND0              	100.00%		H3GYG9              	100.00%
Bootstrap support for Q5KND0 as seed ortholog is 100%.
Bootstrap support for H3GYG9 as seed ortholog is 100%.

Group of orthologs #1420. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KAR1              	100.00%		H3HC32              	100.00%
Bootstrap support for Q5KAR1 as seed ortholog is 100%.
Bootstrap support for H3HC32 as seed ortholog is 100%.

Group of orthologs #1421. Best score 125 bits
Score difference with first non-orthologous sequence - C.neoformans:125 P.ramorum:125

Q5KDN1              	100.00%		H3HDZ9              	100.00%
Bootstrap support for Q5KDN1 as seed ortholog is 100%.
Bootstrap support for H3HDZ9 as seed ortholog is 100%.

Group of orthologs #1422. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5KIU3              	100.00%		H3GLF5              	100.00%
                    	       		H3GLF4              	70.20%
Bootstrap support for Q5KIU3 as seed ortholog is 100%.
Bootstrap support for H3GLF5 as seed ortholog is 100%.

Group of orthologs #1423. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.ramorum:37

Q5KLY1              	100.00%		H3G694              	100.00%
Bootstrap support for Q5KLY1 as seed ortholog is 88%.
Bootstrap support for H3G694 as seed ortholog is 94%.

Group of orthologs #1424. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5KEP4              	100.00%		H3GR80              	100.00%
Bootstrap support for Q5KEP4 as seed ortholog is 100%.
Bootstrap support for H3GR80 as seed ortholog is 100%.

Group of orthologs #1425. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:65

Q5K6Y5              	100.00%		H3H1D6              	100.00%
Bootstrap support for Q5K6Y5 as seed ortholog is 100%.
Bootstrap support for H3H1D6 as seed ortholog is 92%.

Group of orthologs #1426. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5KKQ1              	100.00%		H3GRU5              	100.00%
Bootstrap support for Q5KKQ1 as seed ortholog is 100%.
Bootstrap support for H3GRU5 as seed ortholog is 100%.

Group of orthologs #1427. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5KPL0              	100.00%		H3GQ33              	100.00%
Bootstrap support for Q5KPL0 as seed ortholog is 100%.
Bootstrap support for H3GQ33 as seed ortholog is 100%.

Group of orthologs #1428. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5K7D5              	100.00%		H3HB24              	100.00%
Bootstrap support for Q5K7D5 as seed ortholog is 100%.
Bootstrap support for H3HB24 as seed ortholog is 100%.

Group of orthologs #1429. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:124

Q5KNC5              	100.00%		H3H2J5              	100.00%
Bootstrap support for Q5KNC5 as seed ortholog is 100%.
Bootstrap support for H3H2J5 as seed ortholog is 100%.

Group of orthologs #1430. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:124

Q5KE10              	100.00%		H3HCY7              	100.00%
Bootstrap support for Q5KE10 as seed ortholog is 84%.
Bootstrap support for H3HCY7 as seed ortholog is 100%.

Group of orthologs #1431. Best score 124 bits
Score difference with first non-orthologous sequence - C.neoformans:124 P.ramorum:40

Q5KP23              	100.00%		H3HE21              	100.00%
Bootstrap support for Q5KP23 as seed ortholog is 100%.
Bootstrap support for H3HE21 as seed ortholog is 86%.

Group of orthologs #1432. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KBK4              	100.00%		H3HAX0              	100.00%
                    	       		H3GG51              	95.71%
                    	       		H3GCF2              	65.02%
                    	       		H3GY04              	60.73%
                    	       		H3GCF3              	37.77%
                    	       		H3GCF8              	36.27%
Bootstrap support for Q5KBK4 as seed ortholog is 100%.
Bootstrap support for H3HAX0 as seed ortholog is 100%.

Group of orthologs #1433. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:21

Q5KFP9              	100.00%		H3H240              	100.00%
Q5KFP6              	39.67%		
Q5KAR9              	24.44%		
Bootstrap support for Q5KFP9 as seed ortholog is 100%.
Bootstrap support for H3H240 as seed ortholog is 80%.

Group of orthologs #1434. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KGI4              	100.00%		H3G6F0              	100.00%
Bootstrap support for Q5KGI4 as seed ortholog is 100%.
Bootstrap support for H3G6F0 as seed ortholog is 100%.

Group of orthologs #1435. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KNE0              	100.00%		H3GA04              	100.00%
Bootstrap support for Q5KNE0 as seed ortholog is 100%.
Bootstrap support for H3GA04 as seed ortholog is 100%.

Group of orthologs #1436. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

P0CP40              	100.00%		H3GUB6              	100.00%
Bootstrap support for P0CP40 as seed ortholog is 100%.
Bootstrap support for H3GUB6 as seed ortholog is 100%.

Group of orthologs #1437. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KKG8              	100.00%		H3GHD5              	100.00%
Bootstrap support for Q5KKG8 as seed ortholog is 100%.
Bootstrap support for H3GHD5 as seed ortholog is 100%.

Group of orthologs #1438. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KE04              	100.00%		H3GXW4              	100.00%
Bootstrap support for Q5KE04 as seed ortholog is 100%.
Bootstrap support for H3GXW4 as seed ortholog is 100%.

Group of orthologs #1439. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KJC4              	100.00%		H3GTJ4              	100.00%
Bootstrap support for Q5KJC4 as seed ortholog is 100%.
Bootstrap support for H3GTJ4 as seed ortholog is 100%.

Group of orthologs #1440. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:123 P.ramorum:123

Q5KHF1              	100.00%		H3GXH4              	100.00%
Bootstrap support for Q5KHF1 as seed ortholog is 100%.
Bootstrap support for H3GXH4 as seed ortholog is 100%.

Group of orthologs #1441. Best score 123 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.ramorum:123

Q5KMZ6              	100.00%		H3GX87              	100.00%
Bootstrap support for Q5KMZ6 as seed ortholog is 81%.
Bootstrap support for H3GX87 as seed ortholog is 100%.

Group of orthologs #1442. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:33 P.ramorum:10

Q5KCL3              	100.00%		H3GBR4              	100.00%
                    	       		H3GZ43              	6.13%
Bootstrap support for Q5KCL3 as seed ortholog is 84%.
Bootstrap support for H3GBR4 as seed ortholog is 59%.
Alternative seed ortholog is H3G7D1 (10 bits away from this cluster)

Group of orthologs #1443. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

P0CP16              	100.00%		H3GCH0              	100.00%
Bootstrap support for P0CP16 as seed ortholog is 100%.
Bootstrap support for H3GCH0 as seed ortholog is 100%.

Group of orthologs #1444. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:53

Q5KFF0              	100.00%		H3GAG4              	100.00%
Bootstrap support for Q5KFF0 as seed ortholog is 100%.
Bootstrap support for H3GAG4 as seed ortholog is 99%.

Group of orthologs #1445. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:24

Q5K9G6              	100.00%		H3GHE5              	100.00%
Bootstrap support for Q5K9G6 as seed ortholog is 100%.
Bootstrap support for H3GHE5 as seed ortholog is 79%.

Group of orthologs #1446. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

Q5KLM7              	100.00%		H3G770              	100.00%
Bootstrap support for Q5KLM7 as seed ortholog is 100%.
Bootstrap support for H3G770 as seed ortholog is 100%.

Group of orthologs #1447. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

Q5KM48              	100.00%		H3G8X3              	100.00%
Bootstrap support for Q5KM48 as seed ortholog is 100%.
Bootstrap support for H3G8X3 as seed ortholog is 100%.

Group of orthologs #1448. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

Q5KEW4              	100.00%		H3GJ66              	100.00%
Bootstrap support for Q5KEW4 as seed ortholog is 100%.
Bootstrap support for H3GJ66 as seed ortholog is 100%.

Group of orthologs #1449. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:58

Q5KFU9              	100.00%		H3GQZ6              	100.00%
Bootstrap support for Q5KFU9 as seed ortholog is 100%.
Bootstrap support for H3GQZ6 as seed ortholog is 99%.

Group of orthologs #1450. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:18

Q5KHD3              	100.00%		H3GPZ2              	100.00%
Bootstrap support for Q5KHD3 as seed ortholog is 91%.
Bootstrap support for H3GPZ2 as seed ortholog is 68%.
Alternative seed ortholog is H3H8Z2 (18 bits away from this cluster)

Group of orthologs #1451. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

Q5KGG8              	100.00%		H3H058              	100.00%
Bootstrap support for Q5KGG8 as seed ortholog is 100%.
Bootstrap support for H3H058 as seed ortholog is 100%.

Group of orthologs #1452. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:54

Q5KKF3              	100.00%		H3GXG5              	100.00%
Bootstrap support for Q5KKF3 as seed ortholog is 100%.
Bootstrap support for H3GXG5 as seed ortholog is 91%.

Group of orthologs #1453. Best score 122 bits
Score difference with first non-orthologous sequence - C.neoformans:122 P.ramorum:122

Q5KFF3              	100.00%		H3HBD3              	100.00%
Bootstrap support for Q5KFF3 as seed ortholog is 100%.
Bootstrap support for H3HBD3 as seed ortholog is 100%.

Group of orthologs #1454. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.ramorum:6

Q5KAK0              	100.00%		H3GVU5              	100.00%
                    	       		H3GVU4              	71.77%
                    	       		H3GJ16              	9.59%
Bootstrap support for Q5KAK0 as seed ortholog is 84%.
Bootstrap support for H3GVU5 as seed ortholog is 56%.
Alternative seed ortholog is H3G8W4 (6 bits away from this cluster)

Group of orthologs #1455. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.ramorum:38

Q5KGW6              	100.00%		H3GI81              	100.00%
Q5KI76              	6.47%		
Bootstrap support for Q5KGW6 as seed ortholog is 100%.
Bootstrap support for H3GI81 as seed ortholog is 89%.

Group of orthologs #1456. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.ramorum:121

Q5KLW1              	100.00%		H3GGE0              	100.00%
Bootstrap support for Q5KLW1 as seed ortholog is 100%.
Bootstrap support for H3GGE0 as seed ortholog is 100%.

Group of orthologs #1457. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.ramorum:76

Q5KA82              	100.00%		H3GV34              	100.00%
Bootstrap support for Q5KA82 as seed ortholog is 100%.
Bootstrap support for H3GV34 as seed ortholog is 97%.

Group of orthologs #1458. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.ramorum:121

Q5KF11              	100.00%		H3HCJ4              	100.00%
Bootstrap support for Q5KF11 as seed ortholog is 100%.
Bootstrap support for H3HCJ4 as seed ortholog is 100%.

Group of orthologs #1459. Best score 121 bits
Score difference with first non-orthologous sequence - C.neoformans:121 P.ramorum:121

Q5KK70              	100.00%		H3HEE6              	100.00%
Bootstrap support for Q5KK70 as seed ortholog is 100%.
Bootstrap support for H3HEE6 as seed ortholog is 100%.

Group of orthologs #1460. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KER8              	100.00%		H3GGC7              	100.00%
Q5KGW3              	100.00%		H3GGB5              	100.00%
                    	       		H3GGB6              	67.47%
                    	       		H3GGB7              	67.20%
                    	       		H3GGB2              	61.47%
Bootstrap support for Q5KER8 as seed ortholog is 100%.
Bootstrap support for Q5KGW3 as seed ortholog is 100%.
Bootstrap support for H3GGC7 as seed ortholog is 100%.
Bootstrap support for H3GGB5 as seed ortholog is 100%.

Group of orthologs #1461. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KEW3              	100.00%		H3H1Q6              	100.00%
                    	       		H3GUF2              	19.65%
Bootstrap support for Q5KEW3 as seed ortholog is 100%.
Bootstrap support for H3H1Q6 as seed ortholog is 100%.

Group of orthologs #1462. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

P0CL90              	100.00%		H3GHQ5              	100.00%
Bootstrap support for P0CL90 as seed ortholog is 100%.
Bootstrap support for H3GHQ5 as seed ortholog is 100%.

Group of orthologs #1463. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KAB9              	100.00%		H3GDP2              	100.00%
Bootstrap support for Q5KAB9 as seed ortholog is 100%.
Bootstrap support for H3GDP2 as seed ortholog is 100%.

Group of orthologs #1464. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KN25              	100.00%		H3G9V9              	100.00%
Bootstrap support for Q5KN25 as seed ortholog is 100%.
Bootstrap support for H3G9V9 as seed ortholog is 100%.

Group of orthologs #1465. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5K7C8              	100.00%		H3GVF6              	100.00%
Bootstrap support for Q5K7C8 as seed ortholog is 100%.
Bootstrap support for H3GVF6 as seed ortholog is 100%.

Group of orthologs #1466. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KIB6              	100.00%		H3GY54              	100.00%
Bootstrap support for Q5KIB6 as seed ortholog is 100%.
Bootstrap support for H3GY54 as seed ortholog is 100%.

Group of orthologs #1467. Best score 120 bits
Score difference with first non-orthologous sequence - C.neoformans:120 P.ramorum:120

Q5KPB3              	100.00%		H3H7R5              	100.00%
Bootstrap support for Q5KPB3 as seed ortholog is 100%.
Bootstrap support for H3H7R5 as seed ortholog is 100%.

Group of orthologs #1468. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KMU2              	100.00%		H3GJ62              	100.00%
                    	       		H3GJ63              	86.46%
Bootstrap support for Q5KMU2 as seed ortholog is 100%.
Bootstrap support for H3GJ62 as seed ortholog is 100%.

Group of orthologs #1469. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5K9N0              	100.00%		H3G8A6              	100.00%
Bootstrap support for Q5K9N0 as seed ortholog is 100%.
Bootstrap support for H3G8A6 as seed ortholog is 100%.

Group of orthologs #1470. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KH04              	100.00%		H3GAA6              	100.00%
Bootstrap support for Q5KH04 as seed ortholog is 100%.
Bootstrap support for H3GAA6 as seed ortholog is 100%.

Group of orthologs #1471. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KKZ0              	100.00%		H3G7Y4              	100.00%
Bootstrap support for Q5KKZ0 as seed ortholog is 100%.
Bootstrap support for H3G7Y4 as seed ortholog is 100%.

Group of orthologs #1472. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KNG8              	100.00%		H3G8M6              	100.00%
Bootstrap support for Q5KNG8 as seed ortholog is 100%.
Bootstrap support for H3G8M6 as seed ortholog is 100%.

Group of orthologs #1473. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:17

P0CS10              	100.00%		H3GVK9              	100.00%
Bootstrap support for P0CS10 as seed ortholog is 100%.
Bootstrap support for H3GVK9 as seed ortholog is 64%.
Alternative seed ortholog is H3GLI3 (17 bits away from this cluster)

Group of orthologs #1474. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KIE3              	100.00%		H3GJY0              	100.00%
Bootstrap support for Q5KIE3 as seed ortholog is 100%.
Bootstrap support for H3GJY0 as seed ortholog is 100%.

Group of orthologs #1475. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KFJ8              	100.00%		H3GPI4              	100.00%
Bootstrap support for Q5KFJ8 as seed ortholog is 100%.
Bootstrap support for H3GPI4 as seed ortholog is 100%.

Group of orthologs #1476. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5K813              	100.00%		H3HAS8              	100.00%
Bootstrap support for Q5K813 as seed ortholog is 100%.
Bootstrap support for H3HAS8 as seed ortholog is 100%.

Group of orthologs #1477. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KC52              	100.00%		H3HBG6              	100.00%
Bootstrap support for Q5KC52 as seed ortholog is 100%.
Bootstrap support for H3HBG6 as seed ortholog is 100%.

Group of orthologs #1478. Best score 119 bits
Score difference with first non-orthologous sequence - C.neoformans:119 P.ramorum:119

Q5KPP2              	100.00%		H3H6N8              	100.00%
Bootstrap support for Q5KPP2 as seed ortholog is 100%.
Bootstrap support for H3H6N8 as seed ortholog is 100%.

Group of orthologs #1479. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KNZ5              	100.00%		H3GG39              	100.00%
                    	       		H3H2A8              	25.90%
                    	       		H3GQ58              	12.50%
                    	       		H3GQ61              	12.50%
                    	       		H3GVK8              	6.44%
Bootstrap support for Q5KNZ5 as seed ortholog is 100%.
Bootstrap support for H3GG39 as seed ortholog is 100%.

Group of orthologs #1480. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KAK1              	100.00%		H3GD78              	100.00%
                    	       		H3GPR3              	15.78%
                    	       		H3GSM0              	14.59%
Bootstrap support for Q5KAK1 as seed ortholog is 100%.
Bootstrap support for H3GD78 as seed ortholog is 100%.

Group of orthologs #1481. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5K8A3              	100.00%		H3GBB7              	100.00%
                    	       		H3H3X2              	5.47%
Bootstrap support for Q5K8A3 as seed ortholog is 100%.
Bootstrap support for H3GBB7 as seed ortholog is 100%.

Group of orthologs #1482. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

P0CN16              	100.00%		H3GEL0              	100.00%
                    	       		H3GKJ3              	12.27%
Bootstrap support for P0CN16 as seed ortholog is 100%.
Bootstrap support for H3GEL0 as seed ortholog is 100%.

Group of orthologs #1483. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KKG2              	100.00%		H3GIG5              	100.00%
Q5KDQ6              	10.81%		
Bootstrap support for Q5KKG2 as seed ortholog is 100%.
Bootstrap support for H3GIG5 as seed ortholog is 100%.

Group of orthologs #1484. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:18 P.ramorum:27

Q5KCU7              	100.00%		H3G5H0              	100.00%
Bootstrap support for Q5KCU7 as seed ortholog is 80%.
Bootstrap support for H3G5H0 as seed ortholog is 88%.

Group of orthologs #1485. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5K700              	100.00%		H3GCL3              	100.00%
Bootstrap support for Q5K700 as seed ortholog is 100%.
Bootstrap support for H3GCL3 as seed ortholog is 100%.

Group of orthologs #1486. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KFA1              	100.00%		H3G6F4              	100.00%
Bootstrap support for Q5KFA1 as seed ortholog is 100%.
Bootstrap support for H3G6F4 as seed ortholog is 100%.

Group of orthologs #1487. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

P0CO50              	100.00%		H3GFX6              	100.00%
Bootstrap support for P0CO50 as seed ortholog is 100%.
Bootstrap support for H3GFX6 as seed ortholog is 100%.

Group of orthologs #1488. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KH63              	100.00%		H3G8D3              	100.00%
Bootstrap support for Q5KH63 as seed ortholog is 100%.
Bootstrap support for H3G8D3 as seed ortholog is 100%.

Group of orthologs #1489. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KME4              	100.00%		H3GH02              	100.00%
Bootstrap support for Q5KME4 as seed ortholog is 100%.
Bootstrap support for H3GH02 as seed ortholog is 100%.

Group of orthologs #1490. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:47

Q5KM63              	100.00%		H3GSP0              	100.00%
Bootstrap support for Q5KM63 as seed ortholog is 100%.
Bootstrap support for H3GSP0 as seed ortholog is 91%.

Group of orthologs #1491. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:118

Q5KEB8              	100.00%		H3GZW9              	100.00%
Bootstrap support for Q5KEB8 as seed ortholog is 99%.
Bootstrap support for H3GZW9 as seed ortholog is 100%.

Group of orthologs #1492. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:42

Q5KKT3              	100.00%		H3GUX4              	100.00%
Bootstrap support for Q5KKT3 as seed ortholog is 100%.
Bootstrap support for H3GUX4 as seed ortholog is 90%.

Group of orthologs #1493. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KGH4              	100.00%		H3GZE6              	100.00%
Bootstrap support for Q5KGH4 as seed ortholog is 100%.
Bootstrap support for H3GZE6 as seed ortholog is 100%.

Group of orthologs #1494. Best score 118 bits
Score difference with first non-orthologous sequence - C.neoformans:118 P.ramorum:118

Q5KDS7              	100.00%		H3HCV1              	100.00%
Bootstrap support for Q5KDS7 as seed ortholog is 100%.
Bootstrap support for H3HCV1 as seed ortholog is 100%.

Group of orthologs #1495. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

P0CR76              	100.00%		H3GDF7              	100.00%
                    	       		H3GZW6              	25.00%
Bootstrap support for P0CR76 as seed ortholog is 100%.
Bootstrap support for H3GDF7 as seed ortholog is 100%.

Group of orthologs #1496. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

Q5KE70              	100.00%		H3G7I3              	100.00%
Bootstrap support for Q5KE70 as seed ortholog is 100%.
Bootstrap support for H3G7I3 as seed ortholog is 100%.

Group of orthologs #1497. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

Q5KFF7              	100.00%		H3GED7              	100.00%
Bootstrap support for Q5KFF7 as seed ortholog is 100%.
Bootstrap support for H3GED7 as seed ortholog is 100%.

Group of orthologs #1498. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

Q5KIV7              	100.00%		H3GHR0              	100.00%
Bootstrap support for Q5KIV7 as seed ortholog is 100%.
Bootstrap support for H3GHR0 as seed ortholog is 100%.

Group of orthologs #1499. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:3

Q5KKE8              	100.00%		H3GJS2              	100.00%
Bootstrap support for Q5KKE8 as seed ortholog is 100%.
Bootstrap support for H3GJS2 as seed ortholog is 55%.
Alternative seed ortholog is H3GQ99 (3 bits away from this cluster)

Group of orthologs #1500. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

Q5KL77              	100.00%		H3GS83              	100.00%
Bootstrap support for Q5KL77 as seed ortholog is 100%.
Bootstrap support for H3GS83 as seed ortholog is 100%.

Group of orthologs #1501. Best score 117 bits
Score difference with first non-orthologous sequence - C.neoformans:117 P.ramorum:117

Q5KJ89              	100.00%		H3GWN1              	100.00%
Bootstrap support for Q5KJ89 as seed ortholog is 100%.
Bootstrap support for H3GWN1 as seed ortholog is 100%.

Group of orthologs #1502. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:116

Q5KDN3              	100.00%		H3GVM6              	100.00%
                    	       		H3GB04              	45.40%
                    	       		H3H3H0              	45.40%
                    	       		H3H159              	38.46%
                    	       		H3H158              	37.71%
                    	       		H3H3H1              	35.14%
                    	       		H3GU58              	33.03%
                    	       		H3G6C4              	31.98%
                    	       		H3GU55              	31.22%
                    	       		H3H185              	31.07%
                    	       		H3G630              	29.11%
                    	       		H3H014              	26.24%
                    	       		H3H633              	22.93%
Bootstrap support for Q5KDN3 as seed ortholog is 100%.
Bootstrap support for H3GVM6 as seed ortholog is 100%.

Group of orthologs #1503. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:30

Q5KFY9              	100.00%		H3H0X6              	100.00%
                    	       		H3HE22              	93.34%
Bootstrap support for Q5KFY9 as seed ortholog is 100%.
Bootstrap support for H3H0X6 as seed ortholog is 71%.
Alternative seed ortholog is H3GC77 (30 bits away from this cluster)

Group of orthologs #1504. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:116

Q5KFG9              	100.00%		H3G9D5              	100.00%
Bootstrap support for Q5KFG9 as seed ortholog is 100%.
Bootstrap support for H3G9D5 as seed ortholog is 100%.

Group of orthologs #1505. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:116

Q5K909              	100.00%		H3GM91              	100.00%
Bootstrap support for Q5K909 as seed ortholog is 100%.
Bootstrap support for H3GM91 as seed ortholog is 100%.

Group of orthologs #1506. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:20

Q5KLB1              	100.00%		H3GJY2              	100.00%
Bootstrap support for Q5KLB1 as seed ortholog is 100%.
Bootstrap support for H3GJY2 as seed ortholog is 74%.
Alternative seed ortholog is H3GWR4 (20 bits away from this cluster)

Group of orthologs #1507. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:116 P.ramorum:116

Q5KJT1              	100.00%		H3GMB5              	100.00%
Bootstrap support for Q5KJT1 as seed ortholog is 100%.
Bootstrap support for H3GMB5 as seed ortholog is 100%.

Group of orthologs #1508. Best score 116 bits
Score difference with first non-orthologous sequence - C.neoformans:25 P.ramorum:116

Q5KCS6              	100.00%		H3HDG7              	100.00%
Bootstrap support for Q5KCS6 as seed ortholog is 81%.
Bootstrap support for H3HDG7 as seed ortholog is 100%.

Group of orthologs #1509. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.ramorum:115

Q5KGY5              	100.00%		H3G844              	100.00%
Bootstrap support for Q5KGY5 as seed ortholog is 100%.
Bootstrap support for H3G844 as seed ortholog is 100%.

Group of orthologs #1510. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.ramorum:115

Q5KBV9              	100.00%		H3GEJ9              	100.00%
Bootstrap support for Q5KBV9 as seed ortholog is 100%.
Bootstrap support for H3GEJ9 as seed ortholog is 100%.

Group of orthologs #1511. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.ramorum:115

Q5K7B3              	100.00%		H3GKM6              	100.00%
Bootstrap support for Q5K7B3 as seed ortholog is 100%.
Bootstrap support for H3GKM6 as seed ortholog is 100%.

Group of orthologs #1512. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.ramorum:115

Q5K710              	100.00%		H3GQS8              	100.00%
Bootstrap support for Q5K710 as seed ortholog is 100%.
Bootstrap support for H3GQS8 as seed ortholog is 100%.

Group of orthologs #1513. Best score 115 bits
Score difference with first non-orthologous sequence - C.neoformans:115 P.ramorum:115

Q5KHF0              	100.00%		H3H3Z6              	100.00%
Bootstrap support for Q5KHF0 as seed ortholog is 100%.
Bootstrap support for H3H3Z6 as seed ortholog is 100%.

Group of orthologs #1514. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:114

Q5KC67              	100.00%		H3HAT4              	100.00%
Q5K883              	26.69%		H3GC86              	63.05%
Q5KEQ8              	20.23%		H3GC88              	40.62%
                    	       		H3GC97              	27.86%
Bootstrap support for Q5KC67 as seed ortholog is 100%.
Bootstrap support for H3HAT4 as seed ortholog is 100%.

Group of orthologs #1515. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:114

Q5KDU6              	100.00%		H3G5Z9              	100.00%
Bootstrap support for Q5KDU6 as seed ortholog is 100%.
Bootstrap support for H3G5Z9 as seed ortholog is 100%.

Group of orthologs #1516. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:61

Q5K8Y0              	100.00%		H3GBG8              	100.00%
Bootstrap support for Q5K8Y0 as seed ortholog is 100%.
Bootstrap support for H3GBG8 as seed ortholog is 95%.

Group of orthologs #1517. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:114

Q5K8U4              	100.00%		H3GHN9              	100.00%
Bootstrap support for Q5K8U4 as seed ortholog is 100%.
Bootstrap support for H3GHN9 as seed ortholog is 100%.

Group of orthologs #1518. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:55

Q5KH59              	100.00%		H3GLD6              	100.00%
Bootstrap support for Q5KH59 as seed ortholog is 100%.
Bootstrap support for H3GLD6 as seed ortholog is 92%.

Group of orthologs #1519. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:114

Q5KIJ4              	100.00%		H3GKY3              	100.00%
Bootstrap support for Q5KIJ4 as seed ortholog is 100%.
Bootstrap support for H3GKY3 as seed ortholog is 100%.

Group of orthologs #1520. Best score 114 bits
Score difference with first non-orthologous sequence - C.neoformans:114 P.ramorum:114

Q5KIL1              	100.00%		H3GVE7              	100.00%
Bootstrap support for Q5KIL1 as seed ortholog is 100%.
Bootstrap support for H3GVE7 as seed ortholog is 100%.

Group of orthologs #1521. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.ramorum:113

Q5KAZ2              	100.00%		H3GJ38              	100.00%
                    	       		H3GCT9              	29.63%
                    	       		H3GCT8              	25.38%
Bootstrap support for Q5KAZ2 as seed ortholog is 100%.
Bootstrap support for H3GJ38 as seed ortholog is 100%.

Group of orthologs #1522. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:6 P.ramorum:113

Q5KMX6              	100.00%		H3GS96              	100.00%
Q5KEJ3              	44.33%		
Bootstrap support for Q5KMX6 as seed ortholog is 45%.
Alternative seed ortholog is Q5KNU8 (6 bits away from this cluster)
Bootstrap support for H3GS96 as seed ortholog is 100%.

Group of orthologs #1523. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.ramorum:113

Q5KCU3              	100.00%		H3GMH6              	100.00%
Bootstrap support for Q5KCU3 as seed ortholog is 100%.
Bootstrap support for H3GMH6 as seed ortholog is 100%.

Group of orthologs #1524. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.ramorum:113

P0CM42              	100.00%		H3GX09              	100.00%
Bootstrap support for P0CM42 as seed ortholog is 100%.
Bootstrap support for H3GX09 as seed ortholog is 100%.

Group of orthologs #1525. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.ramorum:113

Q5KK14              	100.00%		H3GM03              	100.00%
Bootstrap support for Q5KK14 as seed ortholog is 100%.
Bootstrap support for H3GM03 as seed ortholog is 100%.

Group of orthologs #1526. Best score 113 bits
Score difference with first non-orthologous sequence - C.neoformans:113 P.ramorum:113

Q5KIM1              	100.00%		H3HAX9              	100.00%
Bootstrap support for Q5KIM1 as seed ortholog is 100%.
Bootstrap support for H3HAX9 as seed ortholog is 100%.

Group of orthologs #1527. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:32 P.ramorum:35

Q5KD15              	100.00%		H3GAC5              	100.00%
Q5KEL5              	93.53%		H3GAX3              	98.88%
Q5K981              	65.47%		H3GZL7              	96.10%
Q5KPJ4              	10.65%		
Q5KAN3              	10.50%		
Q5KPZ2              	10.50%		
Q5KJG0              	8.78%		
Bootstrap support for Q5KD15 as seed ortholog is 78%.
Bootstrap support for H3GAC5 as seed ortholog is 81%.

Group of orthologs #1528. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:112

P0CP06              	100.00%		H3G7X3              	100.00%
Bootstrap support for P0CP06 as seed ortholog is 100%.
Bootstrap support for H3G7X3 as seed ortholog is 100%.

Group of orthologs #1529. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:112

Q5KBD4              	100.00%		H3GTF9              	100.00%
Bootstrap support for Q5KBD4 as seed ortholog is 100%.
Bootstrap support for H3GTF9 as seed ortholog is 100%.

Group of orthologs #1530. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:112

P0CO06              	100.00%		H3H008              	100.00%
Bootstrap support for P0CO06 as seed ortholog is 100%.
Bootstrap support for H3H008 as seed ortholog is 100%.

Group of orthologs #1531. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:112

Q5KLV6              	100.00%		H3GVT6              	100.00%
Bootstrap support for Q5KLV6 as seed ortholog is 100%.
Bootstrap support for H3GVT6 as seed ortholog is 100%.

Group of orthologs #1532. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:112

Q5KG39              	100.00%		H3H5Y1              	100.00%
Bootstrap support for Q5KG39 as seed ortholog is 100%.
Bootstrap support for H3H5Y1 as seed ortholog is 100%.

Group of orthologs #1533. Best score 112 bits
Score difference with first non-orthologous sequence - C.neoformans:112 P.ramorum:42

Q5KPN8              	100.00%		H3HE01              	100.00%
Bootstrap support for Q5KPN8 as seed ortholog is 100%.
Bootstrap support for H3HE01 as seed ortholog is 95%.

Group of orthologs #1534. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.ramorum:6

Q5KGY3              	100.00%		H3HD36              	100.00%
Q5KKP1              	8.63%		H3GMF1              	27.71%
                    	       		H3GU05              	26.91%
                    	       		H3GRZ4              	26.34%
                    	       		H3GUT7              	26.34%
                    	       		H3GZ86              	26.23%
                    	       		H3GXX7              	26.00%
                    	       		H3GCN5              	25.88%
                    	       		H3GYV8              	25.66%
                    	       		H3HAZ5              	25.54%
                    	       		H3GMQ9              	24.97%
                    	       		H3GTX9              	24.86%
                    	       		H3HAH9              	24.52%
                    	       		H3HD37              	24.52%
                    	       		H3GMF0              	24.40%
                    	       		H3GMR2              	24.17%
                    	       		H3GRX5              	23.38%
                    	       		H3GMR4              	23.15%
                    	       		H3GMR1              	23.15%
                    	       		H3H0I9              	22.23%
                    	       		H3GJF2              	19.73%
                    	       		H3GYQ0              	17.22%
                    	       		H3GVC7              	16.76%
                    	       		H3GXX4              	16.08%
                    	       		H3GIU1              	15.62%
                    	       		H3GV91              	15.17%
                    	       		H3GVC6              	14.48%
                    	       		H3GC06              	14.37%
                    	       		H3GLT0              	14.03%
                    	       		H3GC01              	13.80%
                    	       		H3GXX9              	13.80%
                    	       		H3GIC4              	13.23%
                    	       		H3GI50              	12.77%
                    	       		H3H2G0              	12.31%
                    	       		H3GGD5              	10.95%
                    	       		H3GFJ0              	9.12%
                    	       		H3GJL4              	7.64%
                    	       		H3H2F0              	7.18%
                    	       		H3GTX7              	5.59%
Bootstrap support for Q5KGY3 as seed ortholog is 48%.
Alternative seed ortholog is P0CP68 (30 bits away from this cluster)
Bootstrap support for H3HD36 as seed ortholog is 75%.

Group of orthologs #1535. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:111

P0CQ38              	100.00%		H3GE97              	100.00%
                    	       		H3GE96              	21.94%
                    	       		H3HB55              	20.65%
                    	       		H3GE95              	18.71%
Bootstrap support for P0CQ38 as seed ortholog is 97%.
Bootstrap support for H3GE97 as seed ortholog is 100%.

Group of orthologs #1536. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KPS7              	100.00%		H3H379              	100.00%
                    	       		H3G567              	56.28%
Bootstrap support for Q5KPS7 as seed ortholog is 100%.
Bootstrap support for H3H379 as seed ortholog is 100%.

Group of orthologs #1537. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

P0CM78              	100.00%		H3GHP9              	100.00%
Bootstrap support for P0CM78 as seed ortholog is 100%.
Bootstrap support for H3GHP9 as seed ortholog is 100%.

Group of orthologs #1538. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:20 P.ramorum:13

Q5KPY2              	100.00%		H3GA34              	100.00%
Bootstrap support for Q5KPY2 as seed ortholog is 73%.
Alternative seed ortholog is Q5K983 (20 bits away from this cluster)
Bootstrap support for H3GA34 as seed ortholog is 71%.
Alternative seed ortholog is H3G759 (13 bits away from this cluster)

Group of orthologs #1539. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KDW7              	100.00%		H3GS73              	100.00%
Bootstrap support for Q5KDW7 as seed ortholog is 100%.
Bootstrap support for H3GS73 as seed ortholog is 100%.

Group of orthologs #1540. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KBW1              	100.00%		H3GXC2              	100.00%
Bootstrap support for Q5KBW1 as seed ortholog is 100%.
Bootstrap support for H3GXC2 as seed ortholog is 100%.

Group of orthologs #1541. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KHA3              	100.00%		H3GV43              	100.00%
Bootstrap support for Q5KHA3 as seed ortholog is 100%.
Bootstrap support for H3GV43 as seed ortholog is 100%.

Group of orthologs #1542. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KB39              	100.00%		H3H1C1              	100.00%
Bootstrap support for Q5KB39 as seed ortholog is 100%.
Bootstrap support for H3H1C1 as seed ortholog is 100%.

Group of orthologs #1543. Best score 111 bits
Score difference with first non-orthologous sequence - C.neoformans:111 P.ramorum:111

Q5KNT0              	100.00%		H3HBK6              	100.00%
Bootstrap support for Q5KNT0 as seed ortholog is 100%.
Bootstrap support for H3HBK6 as seed ortholog is 100%.

Group of orthologs #1544. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KP75              	100.00%		H3GEJ4              	100.00%
                    	       		H3GSR0              	13.37%
Bootstrap support for Q5KP75 as seed ortholog is 100%.
Bootstrap support for H3GEJ4 as seed ortholog is 100%.

Group of orthologs #1545. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5K9N1              	100.00%		H3G7E0              	100.00%
Bootstrap support for Q5K9N1 as seed ortholog is 100%.
Bootstrap support for H3G7E0 as seed ortholog is 100%.

Group of orthologs #1546. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KIN8              	100.00%		H3G5K6              	100.00%
Bootstrap support for Q5KIN8 as seed ortholog is 100%.
Bootstrap support for H3G5K6 as seed ortholog is 100%.

Group of orthologs #1547. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KL67              	100.00%		H3G7D9              	100.00%
Bootstrap support for Q5KL67 as seed ortholog is 100%.
Bootstrap support for H3G7D9 as seed ortholog is 100%.

Group of orthologs #1548. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KEC0              	100.00%		H3GGQ7              	100.00%
Bootstrap support for Q5KEC0 as seed ortholog is 100%.
Bootstrap support for H3GGQ7 as seed ortholog is 100%.

Group of orthologs #1549. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KF26              	100.00%		H3GI66              	100.00%
Bootstrap support for Q5KF26 as seed ortholog is 100%.
Bootstrap support for H3GI66 as seed ortholog is 100%.

Group of orthologs #1550. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KMK5              	100.00%		H3GTA2              	100.00%
Bootstrap support for Q5KMK5 as seed ortholog is 100%.
Bootstrap support for H3GTA2 as seed ortholog is 100%.

Group of orthologs #1551. Best score 110 bits
Score difference with first non-orthologous sequence - C.neoformans:110 P.ramorum:110

Q5KFE4              	100.00%		H3H4G5              	100.00%
Bootstrap support for Q5KFE4 as seed ortholog is 100%.
Bootstrap support for H3H4G5 as seed ortholog is 100%.

Group of orthologs #1552. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KIM4              	100.00%		H3H8C2              	100.00%
                    	       		H3GNG0              	69.97%
                    	       		H3GZM7              	69.35%
                    	       		H3GBN3              	44.55%
                    	       		H3GDN2              	27.28%
                    	       		H3GPP9              	26.75%
                    	       		H3GPQ2              	26.66%
                    	       		H3GPQ0              	26.48%
                    	       		H3GYM0              	24.53%
                    	       		H3GYL7              	24.27%
                    	       		H3GGS4              	20.81%
                    	       		H3GSW4              	18.60%
Bootstrap support for Q5KIM4 as seed ortholog is 100%.
Bootstrap support for H3H8C2 as seed ortholog is 100%.

Group of orthologs #1553. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KCL5              	100.00%		H3GKQ0              	100.00%
                    	       		H3HA78              	80.77%
Bootstrap support for Q5KCL5 as seed ortholog is 100%.
Bootstrap support for H3GKQ0 as seed ortholog is 100%.

Group of orthologs #1554. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KL21              	100.00%		H3GPT4              	100.00%
                    	       		H3H5Z3              	100.00%
Bootstrap support for Q5KL21 as seed ortholog is 100%.
Bootstrap support for H3GPT4 as seed ortholog is 100%.
Bootstrap support for H3H5Z3 as seed ortholog is 100%.

Group of orthologs #1555. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5K9C9              	100.00%		H3G733              	100.00%
Bootstrap support for Q5K9C9 as seed ortholog is 100%.
Bootstrap support for H3G733 as seed ortholog is 100%.

Group of orthologs #1556. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KKD6              	100.00%		H3G531              	100.00%
Bootstrap support for Q5KKD6 as seed ortholog is 100%.
Bootstrap support for H3G531 as seed ortholog is 100%.

Group of orthologs #1557. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

P0CN00              	100.00%		H3GLI2              	100.00%
Bootstrap support for P0CN00 as seed ortholog is 100%.
Bootstrap support for H3GLI2 as seed ortholog is 100%.

Group of orthologs #1558. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KCT8              	100.00%		H3GS67              	100.00%
Bootstrap support for Q5KCT8 as seed ortholog is 100%.
Bootstrap support for H3GS67 as seed ortholog is 100%.

Group of orthologs #1559. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KKJ3              	100.00%		H3GM35              	100.00%
Bootstrap support for Q5KKJ3 as seed ortholog is 100%.
Bootstrap support for H3GM35 as seed ortholog is 100%.

Group of orthologs #1560. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:109 P.ramorum:109

Q5KDU5              	100.00%		H3GXQ9              	100.00%
Bootstrap support for Q5KDU5 as seed ortholog is 100%.
Bootstrap support for H3GXQ9 as seed ortholog is 100%.

Group of orthologs #1561. Best score 109 bits
Score difference with first non-orthologous sequence - C.neoformans:13 P.ramorum:109

P0CN72              	100.00%		H3HAR5              	100.00%
Bootstrap support for P0CN72 as seed ortholog is 68%.
Alternative seed ortholog is Q5KHV8 (13 bits away from this cluster)
Bootstrap support for H3HAR5 as seed ortholog is 100%.

Group of orthologs #1562. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5K7A4              	100.00%		H3GG89              	100.00%
                    	       		H3H6U6              	68.69%
                    	       		H3GGG7              	58.15%
Bootstrap support for Q5K7A4 as seed ortholog is 100%.
Bootstrap support for H3GG89 as seed ortholog is 100%.

Group of orthologs #1563. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:108

Q5KNE6              	100.00%		H3GCE3              	100.00%
Q5K809              	62.65%		H3GCE4              	70.21%
Bootstrap support for Q5KNE6 as seed ortholog is 92%.
Bootstrap support for H3GCE3 as seed ortholog is 100%.

Group of orthologs #1564. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5K7A6              	100.00%		H3G755              	100.00%
Bootstrap support for Q5K7A6 as seed ortholog is 100%.
Bootstrap support for H3G755 as seed ortholog is 100%.

Group of orthologs #1565. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5K7Y5              	100.00%		H3GFD9              	100.00%
Bootstrap support for Q5K7Y5 as seed ortholog is 100%.
Bootstrap support for H3GFD9 as seed ortholog is 100%.

Group of orthologs #1566. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5KH24              	100.00%		H3GKL7              	100.00%
Bootstrap support for Q5KH24 as seed ortholog is 100%.
Bootstrap support for H3GKL7 as seed ortholog is 100%.

Group of orthologs #1567. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5K7T5              	100.00%		H3GZ44              	100.00%
Bootstrap support for Q5K7T5 as seed ortholog is 100%.
Bootstrap support for H3GZ44 as seed ortholog is 100%.

Group of orthologs #1568. Best score 108 bits
Score difference with first non-orthologous sequence - C.neoformans:108 P.ramorum:108

Q5KGW1              	100.00%		H3H526              	100.00%
Bootstrap support for Q5KGW1 as seed ortholog is 100%.
Bootstrap support for H3H526 as seed ortholog is 100%.

Group of orthologs #1569. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:5 P.ramorum:4

Q5K8L0              	100.00%		H3GAB3              	100.00%
Q5KMM3              	100.00%		H3GZ94              	100.00%
                    	       		H3GZ96              	81.97%
                    	       		H3GZ74              	56.10%
                    	       		H3G8T2              	53.73%
                    	       		H3G876              	40.91%
Bootstrap support for Q5K8L0 as seed ortholog is 53%.
Alternative seed ortholog is Q5KNN5 (5 bits away from this cluster)
Bootstrap support for Q5KMM3 as seed ortholog is 70%.
Alternative seed ortholog is Q5KNN5 (5 bits away from this cluster)
Bootstrap support for H3GAB3 as seed ortholog is 53%.
Alternative seed ortholog is H3G5J8 (4 bits away from this cluster)
Bootstrap support for H3GZ94 as seed ortholog is 68%.
Alternative seed ortholog is H3G5J8 (4 bits away from this cluster)

Group of orthologs #1570. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.ramorum:107

Q5KQ14              	100.00%		H3H4G7              	100.00%
                    	       		H3GB35              	63.35%
                    	       		H3GAW2              	62.11%
                    	       		H3GFV7              	51.55%
Bootstrap support for Q5KQ14 as seed ortholog is 100%.
Bootstrap support for H3H4G7 as seed ortholog is 100%.

Group of orthologs #1571. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.ramorum:107

Q5K964              	100.00%		H3GJW5              	100.00%
Bootstrap support for Q5K964 as seed ortholog is 100%.
Bootstrap support for H3GJW5 as seed ortholog is 100%.

Group of orthologs #1572. Best score 107 bits
Score difference with first non-orthologous sequence - C.neoformans:107 P.ramorum:107

Q5KL47              	100.00%		H3GSA3              	100.00%
Bootstrap support for Q5KL47 as seed ortholog is 100%.
Bootstrap support for H3GSA3 as seed ortholog is 100%.

Group of orthologs #1573. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KH57              	100.00%		H3G5A2              	100.00%
Q5KH47              	16.45%		
Bootstrap support for Q5KH57 as seed ortholog is 100%.
Bootstrap support for H3G5A2 as seed ortholog is 100%.

Group of orthologs #1574. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KAA6              	100.00%		H3G6S7              	100.00%
Bootstrap support for Q5KAA6 as seed ortholog is 100%.
Bootstrap support for H3G6S7 as seed ortholog is 100%.

Group of orthologs #1575. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:27 P.ramorum:106

Q5KK58              	100.00%		H3G9H2              	100.00%
Bootstrap support for Q5KK58 as seed ortholog is 82%.
Bootstrap support for H3G9H2 as seed ortholog is 100%.

Group of orthologs #1576. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KCV8              	100.00%		H3GGX7              	100.00%
Bootstrap support for Q5KCV8 as seed ortholog is 100%.
Bootstrap support for H3GGX7 as seed ortholog is 100%.

Group of orthologs #1577. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KLT4              	100.00%		H3GFK0              	100.00%
Bootstrap support for Q5KLT4 as seed ortholog is 100%.
Bootstrap support for H3GFK0 as seed ortholog is 100%.

Group of orthologs #1578. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.ramorum:106

Q5KFH1              	100.00%		H3GPK2              	100.00%
Bootstrap support for Q5KFH1 as seed ortholog is 60%.
Alternative seed ortholog is Q5KEI5 (1 bits away from this cluster)
Bootstrap support for H3GPK2 as seed ortholog is 100%.

Group of orthologs #1579. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KI35              	100.00%		H3GRD9              	100.00%
Bootstrap support for Q5KI35 as seed ortholog is 100%.
Bootstrap support for H3GRD9 as seed ortholog is 100%.

Group of orthologs #1580. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KI17              	100.00%		H3GVT4              	100.00%
Bootstrap support for Q5KI17 as seed ortholog is 100%.
Bootstrap support for H3GVT4 as seed ortholog is 100%.

Group of orthologs #1581. Best score 106 bits
Score difference with first non-orthologous sequence - C.neoformans:106 P.ramorum:106

Q5KPS3              	100.00%		H3GUC2              	100.00%
Bootstrap support for Q5KPS3 as seed ortholog is 100%.
Bootstrap support for H3GUC2 as seed ortholog is 100%.

Group of orthologs #1582. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KIE8              	100.00%		H3G535              	100.00%
Bootstrap support for Q5KIE8 as seed ortholog is 100%.
Bootstrap support for H3G535 as seed ortholog is 100%.

Group of orthologs #1583. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KHX0              	100.00%		H3GBB8              	100.00%
Bootstrap support for Q5KHX0 as seed ortholog is 100%.
Bootstrap support for H3GBB8 as seed ortholog is 100%.

Group of orthologs #1584. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KF95              	100.00%		H3GGW6              	100.00%
Bootstrap support for Q5KF95 as seed ortholog is 100%.
Bootstrap support for H3GGW6 as seed ortholog is 100%.

Group of orthologs #1585. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

P0CM52              	100.00%		H3GS58              	100.00%
Bootstrap support for P0CM52 as seed ortholog is 100%.
Bootstrap support for H3GS58 as seed ortholog is 100%.

Group of orthologs #1586. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KK86              	100.00%		H3GEG6              	100.00%
Bootstrap support for Q5KK86 as seed ortholog is 100%.
Bootstrap support for H3GEG6 as seed ortholog is 100%.

Group of orthologs #1587. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5K9R8              	100.00%		H3GPL4              	100.00%
Bootstrap support for Q5K9R8 as seed ortholog is 100%.
Bootstrap support for H3GPL4 as seed ortholog is 100%.

Group of orthologs #1588. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KMC3              	100.00%		H3GXF2              	100.00%
Bootstrap support for Q5KMC3 as seed ortholog is 100%.
Bootstrap support for H3GXF2 as seed ortholog is 100%.

Group of orthologs #1589. Best score 105 bits
Score difference with first non-orthologous sequence - C.neoformans:105 P.ramorum:105

Q5KIC9              	100.00%		H3HAY4              	100.00%
Bootstrap support for Q5KIC9 as seed ortholog is 100%.
Bootstrap support for H3HAY4 as seed ortholog is 100%.

Group of orthologs #1590. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5KL55              	100.00%		H3GT63              	100.00%
                    	       		H3GT62              	51.93%
Bootstrap support for Q5KL55 as seed ortholog is 100%.
Bootstrap support for H3GT63 as seed ortholog is 100%.

Group of orthologs #1591. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5K8R9              	100.00%		H3G9P5              	100.00%
Bootstrap support for Q5K8R9 as seed ortholog is 100%.
Bootstrap support for H3G9P5 as seed ortholog is 100%.

Group of orthologs #1592. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

P0CS74              	100.00%		H3GBU9              	100.00%
Bootstrap support for P0CS74 as seed ortholog is 100%.
Bootstrap support for H3GBU9 as seed ortholog is 100%.

Group of orthologs #1593. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5KIE2              	100.00%		H3GA96              	100.00%
Bootstrap support for Q5KIE2 as seed ortholog is 100%.
Bootstrap support for H3GA96 as seed ortholog is 100%.

Group of orthologs #1594. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5K847              	100.00%		H3GRQ7              	100.00%
Bootstrap support for Q5K847 as seed ortholog is 100%.
Bootstrap support for H3GRQ7 as seed ortholog is 100%.

Group of orthologs #1595. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5KF47              	100.00%		H3GRM7              	100.00%
Bootstrap support for Q5KF47 as seed ortholog is 100%.
Bootstrap support for H3GRM7 as seed ortholog is 100%.

Group of orthologs #1596. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

P0CQ30              	100.00%		H3H255              	100.00%
Bootstrap support for P0CQ30 as seed ortholog is 100%.
Bootstrap support for H3H255 as seed ortholog is 100%.

Group of orthologs #1597. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.ramorum:48

Q5KC60              	100.00%		H3GY55              	100.00%
Bootstrap support for Q5KC60 as seed ortholog is 99%.
Bootstrap support for H3GY55 as seed ortholog is 98%.

Group of orthologs #1598. Best score 104 bits
Score difference with first non-orthologous sequence - C.neoformans:104 P.ramorum:104

Q5KJJ7              	100.00%		H3GU82              	100.00%
Bootstrap support for Q5KJJ7 as seed ortholog is 100%.
Bootstrap support for H3GU82 as seed ortholog is 100%.

Group of orthologs #1599. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:103

Q5KAU6              	100.00%		H3GB57              	100.00%
                    	       		H3GA66              	98.35%
                    	       		H3H1Q7              	6.77%
Bootstrap support for Q5KAU6 as seed ortholog is 93%.
Bootstrap support for H3GB57 as seed ortholog is 100%.

Group of orthologs #1600. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.ramorum:103

Q5KGD8              	100.00%		H3GZX3              	100.00%
Bootstrap support for Q5KGD8 as seed ortholog is 100%.
Bootstrap support for H3GZX3 as seed ortholog is 100%.

Group of orthologs #1601. Best score 103 bits
Score difference with first non-orthologous sequence - C.neoformans:103 P.ramorum:103

Q5KE48              	100.00%		H3H5Q0              	100.00%
Bootstrap support for Q5KE48 as seed ortholog is 100%.
Bootstrap support for H3H5Q0 as seed ortholog is 100%.

Group of orthologs #1602. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:21 P.ramorum:5

Q5KES0              	100.00%		H3GR39              	100.00%
                    	       		H3GGK1              	71.11%
                    	       		H3GP26              	30.91%
                    	       		H3GYT3              	25.86%
                    	       		H3GDM0              	24.44%
                    	       		H3H0P6              	23.23%
                    	       		H3H0P9              	21.82%
                    	       		H3GDL9              	21.82%
                    	       		H3GDL8              	21.21%
                    	       		H3GDM1              	19.60%
                    	       		H3GDM6              	19.19%
                    	       		H3H1F0              	18.99%
                    	       		H3GDM3              	18.79%
                    	       		H3H0Q2              	18.59%
                    	       		H3H0P8              	16.97%
                    	       		H3GZM1              	16.57%
                    	       		H3H0N7              	14.55%
                    	       		H3GD46              	14.34%
                    	       		H3H1E9              	11.92%
                    	       		H3H0P0              	6.87%
                    	       		H3GM56              	6.26%
Bootstrap support for Q5KES0 as seed ortholog is 71%.
Alternative seed ortholog is Q5KCA0 (21 bits away from this cluster)
Bootstrap support for H3GR39 as seed ortholog is 62%.
Alternative seed ortholog is H3H549 (5 bits away from this cluster)

Group of orthologs #1603. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.ramorum:102

Q5KEB2              	100.00%		H3G8Q5              	100.00%
                    	       		H3G9A7              	100.00%
                    	       		H3GAY7              	95.26%
Bootstrap support for Q5KEB2 as seed ortholog is 100%.
Bootstrap support for H3G8Q5 as seed ortholog is 100%.
Bootstrap support for H3G9A7 as seed ortholog is 100%.

Group of orthologs #1604. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.ramorum:102

P0CR68              	100.00%		H3GKS2              	100.00%
Bootstrap support for P0CR68 as seed ortholog is 100%.
Bootstrap support for H3GKS2 as seed ortholog is 100%.

Group of orthologs #1605. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.ramorum:102

Q5K8K2              	100.00%		H3GL66              	100.00%
Bootstrap support for Q5K8K2 as seed ortholog is 100%.
Bootstrap support for H3GL66 as seed ortholog is 100%.

Group of orthologs #1606. Best score 102 bits
Score difference with first non-orthologous sequence - C.neoformans:102 P.ramorum:102

Q5KDT5              	100.00%		H3HB15              	100.00%
Bootstrap support for Q5KDT5 as seed ortholog is 100%.
Bootstrap support for H3HB15 as seed ortholog is 100%.

Group of orthologs #1607. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KEC9              	100.00%		H3H0A9              	100.00%
Q5KHL8              	100.00%		H3H0A7              	100.00%
                    	       		H3GR40              	70.09%
                    	       		H3GGF2              	31.38%
                    	       		H3HCP2              	29.03%
                    	       		H3H0B0              	24.39%
                    	       		H3GNV1              	16.20%
Bootstrap support for Q5KEC9 as seed ortholog is 100%.
Bootstrap support for Q5KHL8 as seed ortholog is 100%.
Bootstrap support for H3H0A9 as seed ortholog is 100%.
Bootstrap support for H3H0A7 as seed ortholog is 100%.

Group of orthologs #1608. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:34

Q5KM70              	100.00%		H3H0U5              	100.00%
                    	       		H3H3D2              	50.77%
Bootstrap support for Q5KM70 as seed ortholog is 100%.
Bootstrap support for H3H0U5 as seed ortholog is 72%.
Alternative seed ortholog is H3GIB3 (34 bits away from this cluster)

Group of orthologs #1609. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KHC1              	100.00%		H3H5C8              	100.00%
                    	       		H3HDM6              	92.55%
Bootstrap support for Q5KHC1 as seed ortholog is 100%.
Bootstrap support for H3H5C8 as seed ortholog is 100%.

Group of orthologs #1610. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KF63              	100.00%		H3G8L4              	100.00%
Bootstrap support for Q5KF63 as seed ortholog is 100%.
Bootstrap support for H3G8L4 as seed ortholog is 100%.

Group of orthologs #1611. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.ramorum:101

Q5KHC7              	100.00%		H3GBK0              	100.00%
Bootstrap support for Q5KHC7 as seed ortholog is 79%.
Bootstrap support for H3GBK0 as seed ortholog is 100%.

Group of orthologs #1612. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KP48              	100.00%		H3G666              	100.00%
Bootstrap support for Q5KP48 as seed ortholog is 100%.
Bootstrap support for H3G666 as seed ortholog is 100%.

Group of orthologs #1613. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5K9T5              	100.00%		H3GVQ4              	100.00%
Bootstrap support for Q5K9T5 as seed ortholog is 100%.
Bootstrap support for H3GVQ4 as seed ortholog is 100%.

Group of orthologs #1614. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KGD6              	100.00%		H3GRT9              	100.00%
Bootstrap support for Q5KGD6 as seed ortholog is 100%.
Bootstrap support for H3GRT9 as seed ortholog is 100%.

Group of orthologs #1615. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

P0CP62              	100.00%		H3HBV9              	100.00%
Bootstrap support for P0CP62 as seed ortholog is 100%.
Bootstrap support for H3HBV9 as seed ortholog is 100%.

Group of orthologs #1616. Best score 101 bits
Score difference with first non-orthologous sequence - C.neoformans:101 P.ramorum:101

Q5KPJ3              	100.00%		H3GVD1              	100.00%
Bootstrap support for Q5KPJ3 as seed ortholog is 100%.
Bootstrap support for H3GVD1 as seed ortholog is 100%.

Group of orthologs #1617. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KEQ7              	100.00%		H3GGS9              	100.00%
Q5KM31              	100.00%		H3HCV2              	12.74%
Q5KM49              	16.25%		
Q5KFI9              	6.73%		
Bootstrap support for Q5KEQ7 as seed ortholog is 100%.
Bootstrap support for Q5KM31 as seed ortholog is 100%.
Bootstrap support for H3GGS9 as seed ortholog is 100%.

Group of orthologs #1618. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KK52              	100.00%		H3GC28              	100.00%
Q5K8R3              	15.08%		
Bootstrap support for Q5KK52 as seed ortholog is 100%.
Bootstrap support for H3GC28 as seed ortholog is 100%.

Group of orthologs #1619. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KE66              	100.00%		H3GRY0              	100.00%
                    	       		H3GRX9              	55.26%
Bootstrap support for Q5KE66 as seed ortholog is 100%.
Bootstrap support for H3GRY0 as seed ortholog is 100%.

Group of orthologs #1620. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KMB4              	100.00%		H3GA26              	100.00%
Bootstrap support for Q5KMB4 as seed ortholog is 100%.
Bootstrap support for H3GA26 as seed ortholog is 100%.

Group of orthologs #1621. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5K786              	100.00%		H3GSN7              	100.00%
Bootstrap support for Q5K786 as seed ortholog is 100%.
Bootstrap support for H3GSN7 as seed ortholog is 100%.

Group of orthologs #1622. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KCS0              	100.00%		H3GPH7              	100.00%
Bootstrap support for Q5KCS0 as seed ortholog is 100%.
Bootstrap support for H3GPH7 as seed ortholog is 100%.

Group of orthologs #1623. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5K7R1              	100.00%		H3GVL9              	100.00%
Bootstrap support for Q5K7R1 as seed ortholog is 100%.
Bootstrap support for H3GVL9 as seed ortholog is 100%.

Group of orthologs #1624. Best score 100 bits
Score difference with first non-orthologous sequence - C.neoformans:100 P.ramorum:100

Q5KMD5              	100.00%		H3GQH7              	100.00%
Bootstrap support for Q5KMD5 as seed ortholog is 100%.
Bootstrap support for H3GQH7 as seed ortholog is 100%.

Group of orthologs #1625. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

Q5KAN8              	100.00%		H3GGU8              	100.00%
Q5KP67              	6.19%		
Bootstrap support for Q5KAN8 as seed ortholog is 100%.
Bootstrap support for H3GGU8 as seed ortholog is 100%.

Group of orthologs #1626. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

P0CR20              	100.00%		H3G8J4              	100.00%
Bootstrap support for P0CR20 as seed ortholog is 100%.
Bootstrap support for H3G8J4 as seed ortholog is 100%.

Group of orthologs #1627. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

Q5KC59              	100.00%		H3GCK4              	100.00%
Bootstrap support for Q5KC59 as seed ortholog is 100%.
Bootstrap support for H3GCK4 as seed ortholog is 100%.

Group of orthologs #1628. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

Q5KMS2              	100.00%		H3G809              	100.00%
Bootstrap support for Q5KMS2 as seed ortholog is 100%.
Bootstrap support for H3G809 as seed ortholog is 100%.

Group of orthologs #1629. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:38 P.ramorum:33

Q5K8U3              	100.00%		H3GLF6              	100.00%
Bootstrap support for Q5K8U3 as seed ortholog is 78%.
Bootstrap support for H3GLF6 as seed ortholog is 86%.

Group of orthologs #1630. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

Q5KP80              	100.00%		H3GAU5              	100.00%
Bootstrap support for Q5KP80 as seed ortholog is 100%.
Bootstrap support for H3GAU5 as seed ortholog is 100%.

Group of orthologs #1631. Best score 99 bits
Score difference with first non-orthologous sequence - C.neoformans:99 P.ramorum:99

Q5KGD0              	100.00%		H3HBE5              	100.00%
Bootstrap support for Q5KGD0 as seed ortholog is 100%.
Bootstrap support for H3HBE5 as seed ortholog is 100%.

Group of orthologs #1632. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:30 P.ramorum:98

Q5K7Y7              	100.00%		H3H0I3              	100.00%
                    	       		H3H2C8              	37.97%
                    	       		H3GAP4              	31.82%
                    	       		H3GD29              	31.28%
                    	       		H3HB03              	30.75%
                    	       		H3H2D1              	28.61%
                    	       		H3H2D3              	28.61%
                    	       		H3H590              	28.34%
                    	       		H3GY59              	27.54%
                    	       		H3G9N5              	25.40%
                    	       		H3GJX2              	25.40%
                    	       		H3GM66              	24.60%
                    	       		H3GAP6              	24.33%
                    	       		H3GSI6              	11.50%
Bootstrap support for Q5K7Y7 as seed ortholog is 81%.
Bootstrap support for H3H0I3 as seed ortholog is 100%.

Group of orthologs #1633. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.ramorum:98

Q5KKU9              	100.00%		H3G5B7              	100.00%
Bootstrap support for Q5KKU9 as seed ortholog is 100%.
Bootstrap support for H3G5B7 as seed ortholog is 100%.

Group of orthologs #1634. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.ramorum:98

Q5KM69              	100.00%		H3GHB9              	100.00%
Bootstrap support for Q5KM69 as seed ortholog is 100%.
Bootstrap support for H3GHB9 as seed ortholog is 100%.

Group of orthologs #1635. Best score 98 bits
Score difference with first non-orthologous sequence - C.neoformans:98 P.ramorum:98

Q5KI55              	100.00%		H3GYT5              	100.00%
Bootstrap support for Q5KI55 as seed ortholog is 100%.
Bootstrap support for H3GYT5 as seed ortholog is 100%.

Group of orthologs #1636. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:97

Q5KJ95              	100.00%		H3GF52              	100.00%
                    	       		H3GF53              	60.17%
                    	       		H3GF98              	45.01%
                    	       		H3GF50              	44.07%
                    	       		H3GF48              	43.69%
                    	       		H3GF49              	37.01%
Bootstrap support for Q5KJ95 as seed ortholog is 100%.
Bootstrap support for H3GF52 as seed ortholog is 100%.

Group of orthologs #1637. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:97

Q5KKY6              	100.00%		H3GS49              	100.00%
                    	       		H3GS50              	64.57%
Bootstrap support for Q5KKY6 as seed ortholog is 100%.
Bootstrap support for H3GS49 as seed ortholog is 100%.

Group of orthologs #1638. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:97

Q5KJZ1              	100.00%		H3GGZ6              	100.00%
Bootstrap support for Q5KJZ1 as seed ortholog is 100%.
Bootstrap support for H3GGZ6 as seed ortholog is 100%.

Group of orthologs #1639. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:97

Q5KE42              	100.00%		H3H4Q6              	100.00%
Bootstrap support for Q5KE42 as seed ortholog is 100%.
Bootstrap support for H3H4Q6 as seed ortholog is 100%.

Group of orthologs #1640. Best score 97 bits
Score difference with first non-orthologous sequence - C.neoformans:97 P.ramorum:97

Q5KLZ3              	100.00%		H3H3Q9              	100.00%
Bootstrap support for Q5KLZ3 as seed ortholog is 100%.
Bootstrap support for H3H3Q9 as seed ortholog is 100%.

Group of orthologs #1641. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:96

Q5KIX9              	100.00%		H3GX41              	100.00%
                    	       		H3GX40              	57.33%
                    	       		H3GX39              	52.44%
Bootstrap support for Q5KIX9 as seed ortholog is 100%.
Bootstrap support for H3GX41 as seed ortholog is 100%.

Group of orthologs #1642. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:96

Q5KA28              	100.00%		H3GEE9              	100.00%
Bootstrap support for Q5KA28 as seed ortholog is 100%.
Bootstrap support for H3GEE9 as seed ortholog is 100%.

Group of orthologs #1643. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:96

Q5KIT8              	100.00%		H3G7J4              	100.00%
Bootstrap support for Q5KIT8 as seed ortholog is 100%.
Bootstrap support for H3G7J4 as seed ortholog is 100%.

Group of orthologs #1644. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:15

Q5KLG7              	100.00%		H3G542              	100.00%
Bootstrap support for Q5KLG7 as seed ortholog is 99%.
Bootstrap support for H3G542 as seed ortholog is 87%.

Group of orthologs #1645. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:96

Q5KBY8              	100.00%		H3GMV3              	100.00%
Bootstrap support for Q5KBY8 as seed ortholog is 100%.
Bootstrap support for H3GMV3 as seed ortholog is 100%.

Group of orthologs #1646. Best score 96 bits
Score difference with first non-orthologous sequence - C.neoformans:96 P.ramorum:96

Q5KDN0              	100.00%		H3GQT3              	100.00%
Bootstrap support for Q5KDN0 as seed ortholog is 100%.
Bootstrap support for H3GQT3 as seed ortholog is 100%.

Group of orthologs #1647. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KJG3              	100.00%		H3GMS8              	100.00%
                    	       		H3GMT1              	30.66%
                    	       		H3GMT0              	18.55%
                    	       		H3GTM6              	7.42%
                    	       		H3GTM5              	6.45%
Bootstrap support for Q5KJG3 as seed ortholog is 100%.
Bootstrap support for H3GMS8 as seed ortholog is 100%.

Group of orthologs #1648. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KA05              	100.00%		H3GY44              	100.00%
                    	       		H3GY46              	71.29%
                    	       		H3GY45              	70.43%
Bootstrap support for Q5KA05 as seed ortholog is 100%.
Bootstrap support for H3GY44 as seed ortholog is 100%.

Group of orthologs #1649. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KJP2              	100.00%		H3GH12              	100.00%
                    	       		H3GH13              	65.71%
Bootstrap support for Q5KJP2 as seed ortholog is 100%.
Bootstrap support for H3GH12 as seed ortholog is 100%.

Group of orthologs #1650. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KNX7              	100.00%		H3HA43              	100.00%
                    	       		H3HEF4              	95.56%
Bootstrap support for Q5KNX7 as seed ortholog is 100%.
Bootstrap support for H3HA43 as seed ortholog is 100%.

Group of orthologs #1651. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5K900              	100.00%		H3G8P4              	100.00%
Bootstrap support for Q5K900 as seed ortholog is 100%.
Bootstrap support for H3G8P4 as seed ortholog is 100%.

Group of orthologs #1652. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5K774              	100.00%		H3GBG6              	100.00%
Bootstrap support for Q5K774 as seed ortholog is 100%.
Bootstrap support for H3GBG6 as seed ortholog is 100%.

Group of orthologs #1653. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5K9E5              	100.00%		H3G9H6              	100.00%
Bootstrap support for Q5K9E5 as seed ortholog is 100%.
Bootstrap support for H3G9H6 as seed ortholog is 100%.

Group of orthologs #1654. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KA95              	100.00%		H3GCL4              	100.00%
Bootstrap support for Q5KA95 as seed ortholog is 100%.
Bootstrap support for H3GCL4 as seed ortholog is 100%.

Group of orthologs #1655. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:48

Q5KJW8              	100.00%		H3G9L3              	100.00%
Bootstrap support for Q5KJW8 as seed ortholog is 100%.
Bootstrap support for H3G9L3 as seed ortholog is 99%.

Group of orthologs #1656. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KHD2              	100.00%		H3GCA7              	100.00%
Bootstrap support for Q5KHD2 as seed ortholog is 100%.
Bootstrap support for H3GCA7 as seed ortholog is 100%.

Group of orthologs #1657. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:12

Q5KKY4              	100.00%		H3G991              	100.00%
Bootstrap support for Q5KKY4 as seed ortholog is 100%.
Bootstrap support for H3G991 as seed ortholog is 64%.
Alternative seed ortholog is H3GVW1 (12 bits away from this cluster)

Group of orthologs #1658. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KBR2              	100.00%		H3GV84              	100.00%
Bootstrap support for Q5KBR2 as seed ortholog is 100%.
Bootstrap support for H3GV84 as seed ortholog is 100%.

Group of orthologs #1659. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KMK6              	100.00%		H3GWJ9              	100.00%
Bootstrap support for Q5KMK6 as seed ortholog is 100%.
Bootstrap support for H3GWJ9 as seed ortholog is 100%.

Group of orthologs #1660. Best score 95 bits
Score difference with first non-orthologous sequence - C.neoformans:95 P.ramorum:95

Q5KPA8              	100.00%		H3HC65              	100.00%
Bootstrap support for Q5KPA8 as seed ortholog is 100%.
Bootstrap support for H3HC65 as seed ortholog is 100%.

Group of orthologs #1661. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:34

Q5KJH4              	100.00%		H3HC90              	100.00%
Q5KJH3              	16.10%		H3GMP9              	36.19%
Bootstrap support for Q5KJH4 as seed ortholog is 100%.
Bootstrap support for H3HC90 as seed ortholog is 79%.

Group of orthologs #1662. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:22

Q5KCD7              	100.00%		H3G6D3              	100.00%
                    	       		H3G6D4              	100.00%
Bootstrap support for Q5KCD7 as seed ortholog is 100%.
Bootstrap support for H3G6D3 as seed ortholog is 79%.
Bootstrap support for H3G6D4 as seed ortholog is 77%.

Group of orthologs #1663. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5KI11              	100.00%		H3GTW4              	100.00%
                    	       		H3GC61              	15.62%
Bootstrap support for Q5KI11 as seed ortholog is 100%.
Bootstrap support for H3GTW4 as seed ortholog is 100%.

Group of orthologs #1664. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:17

Q5KMN4              	100.00%		H3HCU8              	100.00%
                    	       		H3GVD0              	28.55%
Bootstrap support for Q5KMN4 as seed ortholog is 100%.
Bootstrap support for H3HCU8 as seed ortholog is 76%.

Group of orthologs #1665. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5KF36              	100.00%		H3G634              	100.00%
Bootstrap support for Q5KF36 as seed ortholog is 100%.
Bootstrap support for H3G634 as seed ortholog is 100%.

Group of orthologs #1666. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5K8B5              	100.00%		H3GM53              	100.00%
Bootstrap support for Q5K8B5 as seed ortholog is 100%.
Bootstrap support for H3GM53 as seed ortholog is 100%.

Group of orthologs #1667. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5KP16              	100.00%		H3G8N4              	100.00%
Bootstrap support for Q5KP16 as seed ortholog is 100%.
Bootstrap support for H3G8N4 as seed ortholog is 100%.

Group of orthologs #1668. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5K6X4              	100.00%		H3GXU5              	100.00%
Bootstrap support for Q5K6X4 as seed ortholog is 100%.
Bootstrap support for H3GXU5 as seed ortholog is 100%.

Group of orthologs #1669. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:28 P.ramorum:94

Q5KF49              	100.00%		H3GW64              	100.00%
Bootstrap support for Q5KF49 as seed ortholog is 82%.
Bootstrap support for H3GW64 as seed ortholog is 100%.

Group of orthologs #1670. Best score 94 bits
Score difference with first non-orthologous sequence - C.neoformans:94 P.ramorum:94

Q5KBG4              	100.00%		H3HBL2              	100.00%
Bootstrap support for Q5KBG4 as seed ortholog is 100%.
Bootstrap support for H3HBL2 as seed ortholog is 100%.

Group of orthologs #1671. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.ramorum:93

Q5KPB0              	100.00%		H3GUN7              	100.00%
                    	       		H3GUN4              	18.02%
Bootstrap support for Q5KPB0 as seed ortholog is 100%.
Bootstrap support for H3GUN7 as seed ortholog is 100%.

Group of orthologs #1672. Best score 93 bits
Score difference with first non-orthologous sequence - C.neoformans:93 P.ramorum:93

Q5KI30              	100.00%		H3HBE8              	100.00%
Bootstrap support for Q5KI30 as seed ortholog is 100%.
Bootstrap support for H3HBE8 as seed ortholog is 100%.

Group of orthologs #1673. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5KAT0              	100.00%		H3GQG2              	100.00%
                    	       		H3G4Y6              	36.06%
                    	       		H3H1Q8              	16.25%
Bootstrap support for Q5KAT0 as seed ortholog is 100%.
Bootstrap support for H3GQG2 as seed ortholog is 100%.

Group of orthologs #1674. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5KDM8              	100.00%		H3H419              	100.00%
Q5KDM5              	90.43%		
Bootstrap support for Q5KDM8 as seed ortholog is 100%.
Bootstrap support for H3H419 as seed ortholog is 100%.

Group of orthologs #1675. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

P0CR24              	100.00%		H3G919              	100.00%
Bootstrap support for P0CR24 as seed ortholog is 100%.
Bootstrap support for H3G919 as seed ortholog is 100%.

Group of orthologs #1676. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5K8Z0              	100.00%		H3G9S5              	100.00%
Bootstrap support for Q5K8Z0 as seed ortholog is 100%.
Bootstrap support for H3G9S5 as seed ortholog is 100%.

Group of orthologs #1677. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5K8A6              	100.00%		H3GAL5              	100.00%
Bootstrap support for Q5K8A6 as seed ortholog is 100%.
Bootstrap support for H3GAL5 as seed ortholog is 100%.

Group of orthologs #1678. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5KEX5              	100.00%		H3GKR7              	100.00%
Bootstrap support for Q5KEX5 as seed ortholog is 100%.
Bootstrap support for H3GKR7 as seed ortholog is 100%.

Group of orthologs #1679. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:92

Q5KMU1              	100.00%		H3GMP6              	100.00%
Bootstrap support for Q5KMU1 as seed ortholog is 100%.
Bootstrap support for H3GMP6 as seed ortholog is 100%.

Group of orthologs #1680. Best score 92 bits
Score difference with first non-orthologous sequence - C.neoformans:92 P.ramorum:5

Q5KB06              	100.00%		H3H3S9              	100.00%
Bootstrap support for Q5KB06 as seed ortholog is 100%.
Bootstrap support for H3H3S9 as seed ortholog is 49%.
Alternative seed ortholog is H3G8U6 (5 bits away from this cluster)

Group of orthologs #1681. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KDI7              	100.00%		H3G6S5              	100.00%
Bootstrap support for Q5KDI7 as seed ortholog is 100%.
Bootstrap support for H3G6S5 as seed ortholog is 100%.

Group of orthologs #1682. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KAG7              	100.00%		H3GC55              	100.00%
Bootstrap support for Q5KAG7 as seed ortholog is 100%.
Bootstrap support for H3GC55 as seed ortholog is 100%.

Group of orthologs #1683. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KDD8              	100.00%		H3GI79              	100.00%
Bootstrap support for Q5KDD8 as seed ortholog is 100%.
Bootstrap support for H3GI79 as seed ortholog is 100%.

Group of orthologs #1684. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KMF4              	100.00%		H3GD59              	100.00%
Bootstrap support for Q5KMF4 as seed ortholog is 100%.
Bootstrap support for H3GD59 as seed ortholog is 100%.

Group of orthologs #1685. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KGH0              	100.00%		H3GMN0              	100.00%
Bootstrap support for Q5KGH0 as seed ortholog is 100%.
Bootstrap support for H3GMN0 as seed ortholog is 100%.

Group of orthologs #1686. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:50

Q5KBI8              	100.00%		H3GXD4              	100.00%
Bootstrap support for Q5KBI8 as seed ortholog is 100%.
Bootstrap support for H3GXD4 as seed ortholog is 86%.

Group of orthologs #1687. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5K788              	100.00%		H3H248              	100.00%
Bootstrap support for Q5K788 as seed ortholog is 100%.
Bootstrap support for H3H248 as seed ortholog is 100%.

Group of orthologs #1688. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KIL3              	100.00%		H3GTR1              	100.00%
Bootstrap support for Q5KIL3 as seed ortholog is 100%.
Bootstrap support for H3GTR1 as seed ortholog is 100%.

Group of orthologs #1689. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KKK1              	100.00%		H3GTH1              	100.00%
Bootstrap support for Q5KKK1 as seed ortholog is 100%.
Bootstrap support for H3GTH1 as seed ortholog is 100%.

Group of orthologs #1690. Best score 91 bits
Score difference with first non-orthologous sequence - C.neoformans:91 P.ramorum:91

Q5KM81              	100.00%		H3HD35              	100.00%
Bootstrap support for Q5KM81 as seed ortholog is 100%.
Bootstrap support for H3HD35 as seed ortholog is 100%.

Group of orthologs #1691. Best score 90 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.ramorum:90

Q5KQ44              	100.00%		H3GID2              	100.00%
Q5KPV8              	49.85%		
Bootstrap support for Q5KQ44 as seed ortholog is 93%.
Bootstrap support for H3GID2 as seed ortholog is 100%.

Group of orthologs #1692. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KE72              	100.00%		H3GMK5              	100.00%
                    	       		H3GMK6              	100.00%
                    	       		H3GUF9              	100.00%
                    	       		H3H4Y7              	88.47%
                    	       		H3GUG0              	88.36%
                    	       		H3HC80              	79.18%
                    	       		H3GDE9              	58.68%
                    	       		H3GML3              	52.45%
                    	       		H3HC77              	49.31%
Bootstrap support for Q5KE72 as seed ortholog is 100%.
Bootstrap support for H3GMK5 as seed ortholog is 100%.
Bootstrap support for H3GMK6 as seed ortholog is 100%.
Bootstrap support for H3GUF9 as seed ortholog is 100%.

Group of orthologs #1693. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KA73              	100.00%		H3H1I3              	100.00%
                    	       		H3G6G4              	20.15%
                    	       		H3GHB6              	10.27%
Bootstrap support for Q5KA73 as seed ortholog is 100%.
Bootstrap support for H3H1I3 as seed ortholog is 100%.

Group of orthologs #1694. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KI32              	100.00%		H3H6C7              	100.00%
                    	       		H3GRA5              	99.71%
Bootstrap support for Q5KI32 as seed ortholog is 100%.
Bootstrap support for H3H6C7 as seed ortholog is 100%.

Group of orthologs #1695. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5K8F4              	100.00%		H3GHR9              	100.00%
Bootstrap support for Q5K8F4 as seed ortholog is 100%.
Bootstrap support for H3GHR9 as seed ortholog is 100%.

Group of orthologs #1696. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

P0CS56              	100.00%		H3GS08              	100.00%
Bootstrap support for P0CS56 as seed ortholog is 100%.
Bootstrap support for H3GS08 as seed ortholog is 100%.

Group of orthologs #1697. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KJM9              	100.00%		H3GIT3              	100.00%
Bootstrap support for Q5KJM9 as seed ortholog is 100%.
Bootstrap support for H3GIT3 as seed ortholog is 100%.

Group of orthologs #1698. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KB42              	100.00%		H3GY17              	100.00%
Bootstrap support for Q5KB42 as seed ortholog is 100%.
Bootstrap support for H3GY17 as seed ortholog is 100%.

Group of orthologs #1699. Best score 89 bits
Score difference with first non-orthologous sequence - C.neoformans:89 P.ramorum:89

Q5KEA5              	100.00%		H3HD98              	100.00%
Bootstrap support for Q5KEA5 as seed ortholog is 100%.
Bootstrap support for H3HD98 as seed ortholog is 100%.

Group of orthologs #1700. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:1

Q5KLQ6              	100.00%		H3GMQ3              	100.00%
                    	       		H3GMQ4              	90.20%
                    	       		H3GMQ5              	66.78%
                    	       		H3GMQ2              	66.32%
                    	       		H3GMY7              	57.44%
                    	       		H3GH90              	47.98%
                    	       		H3H6B3              	47.40%
                    	       		H3GH89              	46.14%
                    	       		H3H5E6              	29.30%
Bootstrap support for Q5KLQ6 as seed ortholog is 100%.
Bootstrap support for H3GMQ3 as seed ortholog is 69%.
Alternative seed ortholog is H3GXV6 (1 bits away from this cluster)

Group of orthologs #1701. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

Q5K9F3              	100.00%		H3GBX0              	100.00%
                    	       		H3GBW9              	51.76%
Bootstrap support for Q5K9F3 as seed ortholog is 100%.
Bootstrap support for H3GBX0 as seed ortholog is 100%.

Group of orthologs #1702. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

Q5KJN0              	100.00%		H3GRW0              	100.00%
                    	       		H3H6B9              	100.00%
Bootstrap support for Q5KJN0 as seed ortholog is 100%.
Bootstrap support for H3GRW0 as seed ortholog is 100%.
Bootstrap support for H3H6B9 as seed ortholog is 100%.

Group of orthologs #1703. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

P0CM94              	100.00%		H3G6V0              	100.00%
Bootstrap support for P0CM94 as seed ortholog is 100%.
Bootstrap support for H3G6V0 as seed ortholog is 100%.

Group of orthologs #1704. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

Q5KN63              	100.00%		H3G937              	100.00%
Bootstrap support for Q5KN63 as seed ortholog is 100%.
Bootstrap support for H3G937 as seed ortholog is 100%.

Group of orthologs #1705. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

Q5KQ96              	100.00%		H3GFG0              	100.00%
Bootstrap support for Q5KQ96 as seed ortholog is 100%.
Bootstrap support for H3GFG0 as seed ortholog is 100%.

Group of orthologs #1706. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:38

Q5KFN4              	100.00%		H3GYW5              	100.00%
Bootstrap support for Q5KFN4 as seed ortholog is 100%.
Bootstrap support for H3GYW5 as seed ortholog is 88%.

Group of orthologs #1707. Best score 88 bits
Score difference with first non-orthologous sequence - C.neoformans:88 P.ramorum:88

Q5KC41              	100.00%		H3H6Q8              	100.00%
Bootstrap support for Q5KC41 as seed ortholog is 100%.
Bootstrap support for H3H6Q8 as seed ortholog is 100%.

Group of orthologs #1708. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KMX4              	100.00%		H3GDI6              	100.00%
                    	       		H3GDJ1              	100.00%
                    	       		H3GDJ3              	60.96%
                    	       		H3HB30              	50.66%
                    	       		H3GWP8              	48.17%
                    	       		H3GDJ4              	47.93%
                    	       		H3GDJ2              	47.67%
                    	       		H3GDI0              	46.51%
                    	       		H3GDJ0              	44.02%
                    	       		H3GDJ5              	34.05%
                    	       		H3GDH7              	31.57%
                    	       		H3GDI1              	26.37%
                    	       		H3GNE0              	25.22%
                    	       		H3GDI9              	25.08%
                    	       		H3GDH9              	24.45%
                    	       		H3GNE1              	22.04%
                    	       		H3GK53              	21.76%
                    	       		H3HCC4              	20.69%
                    	       		H3HD30              	19.73%
Bootstrap support for Q5KMX4 as seed ortholog is 100%.
Bootstrap support for H3GDI6 as seed ortholog is 100%.
Bootstrap support for H3GDJ1 as seed ortholog is 100%.

Group of orthologs #1709. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KMX9              	100.00%		H3HBR1              	100.00%
                    	       		H3GED2              	17.61%
                    	       		H3GWW2              	17.61%
                    	       		H3H2Q0              	8.59%
Bootstrap support for Q5KMX9 as seed ortholog is 100%.
Bootstrap support for H3HBR1 as seed ortholog is 100%.

Group of orthologs #1710. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KBI3              	100.00%		H3H035              	100.00%
                    	       		H3GDK2              	11.11%
                    	       		H3GSP3              	10.42%
Bootstrap support for Q5KBI3 as seed ortholog is 100%.
Bootstrap support for H3H035 as seed ortholog is 100%.

Group of orthologs #1711. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:8 P.ramorum:20

Q5KJT3              	100.00%		H3H6J3              	100.00%
Q5KML8              	27.63%		H3H5V7              	38.33%
Bootstrap support for Q5KJT3 as seed ortholog is 61%.
Alternative seed ortholog is Q5KIP0 (8 bits away from this cluster)
Bootstrap support for H3H6J3 as seed ortholog is 73%.
Alternative seed ortholog is H3HC55 (20 bits away from this cluster)

Group of orthologs #1712. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KLG1              	100.00%		H3GEB4              	100.00%
                    	       		H3H9P8              	100.00%
Bootstrap support for Q5KLG1 as seed ortholog is 100%.
Bootstrap support for H3GEB4 as seed ortholog is 100%.
Bootstrap support for H3H9P8 as seed ortholog is 100%.

Group of orthologs #1713. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KPN0              	100.00%		H3GGB9              	100.00%
                    	       		H3HD46              	25.22%
Bootstrap support for Q5KPN0 as seed ortholog is 100%.
Bootstrap support for H3GGB9 as seed ortholog is 100%.

Group of orthologs #1714. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

P0CM10              	100.00%		H3G545              	100.00%
Bootstrap support for P0CM10 as seed ortholog is 100%.
Bootstrap support for H3G545 as seed ortholog is 100%.

Group of orthologs #1715. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5K8X7              	100.00%		H3G8C2              	100.00%
Bootstrap support for Q5K8X7 as seed ortholog is 100%.
Bootstrap support for H3G8C2 as seed ortholog is 100%.

Group of orthologs #1716. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KDM7              	100.00%		H3GBW8              	100.00%
Bootstrap support for Q5KDM7 as seed ortholog is 100%.
Bootstrap support for H3GBW8 as seed ortholog is 100%.

Group of orthologs #1717. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:33

Q5KLA4              	100.00%		H3GFP9              	100.00%
Bootstrap support for Q5KLA4 as seed ortholog is 100%.
Bootstrap support for H3GFP9 as seed ortholog is 94%.

Group of orthologs #1718. Best score 87 bits
Score difference with first non-orthologous sequence - C.neoformans:87 P.ramorum:87

Q5KBD5              	100.00%		H3HAV5              	100.00%
Bootstrap support for Q5KBD5 as seed ortholog is 100%.
Bootstrap support for H3HAV5 as seed ortholog is 100%.

Group of orthologs #1719. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5K792              	100.00%		H3GAU8              	100.00%
                    	       		H3H400              	31.92%
                    	       		H3GBC4              	24.01%
                    	       		H3GC44              	23.43%
                    	       		H3GWQ8              	23.28%
Bootstrap support for Q5K792 as seed ortholog is 100%.
Bootstrap support for H3GAU8 as seed ortholog is 100%.

Group of orthologs #1720. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KN56              	100.00%		H3GG37              	100.00%
Q5K6U5              	24.10%		
Bootstrap support for Q5KN56 as seed ortholog is 100%.
Bootstrap support for H3GG37 as seed ortholog is 100%.

Group of orthologs #1721. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KIC8              	100.00%		H3GUB2              	100.00%
                    	       		H3HD49              	48.01%
Bootstrap support for Q5KIC8 as seed ortholog is 100%.
Bootstrap support for H3GUB2 as seed ortholog is 100%.

Group of orthologs #1722. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KHQ2              	100.00%		H3G5I2              	100.00%
Bootstrap support for Q5KHQ2 as seed ortholog is 100%.
Bootstrap support for H3G5I2 as seed ortholog is 100%.

Group of orthologs #1723. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5K9V6              	100.00%		H3GD84              	100.00%
Bootstrap support for Q5K9V6 as seed ortholog is 100%.
Bootstrap support for H3GD84 as seed ortholog is 100%.

Group of orthologs #1724. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KJR6              	100.00%		H3GDE7              	100.00%
Bootstrap support for Q5KJR6 as seed ortholog is 100%.
Bootstrap support for H3GDE7 as seed ortholog is 100%.

Group of orthologs #1725. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5K8Z4              	100.00%		H3GRP2              	100.00%
Bootstrap support for Q5K8Z4 as seed ortholog is 100%.
Bootstrap support for H3GRP2 as seed ortholog is 100%.

Group of orthologs #1726. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KKH5              	100.00%		H3GG85              	100.00%
Bootstrap support for Q5KKH5 as seed ortholog is 100%.
Bootstrap support for H3GG85 as seed ortholog is 100%.

Group of orthologs #1727. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KC37              	100.00%		H3GSF7              	100.00%
Bootstrap support for Q5KC37 as seed ortholog is 100%.
Bootstrap support for H3GSF7 as seed ortholog is 100%.

Group of orthologs #1728. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:19

Q5KMM2              	100.00%		H3HC29              	100.00%
Bootstrap support for Q5KMM2 as seed ortholog is 100%.
Bootstrap support for H3HC29 as seed ortholog is 76%.

Group of orthologs #1729. Best score 86 bits
Score difference with first non-orthologous sequence - C.neoformans:86 P.ramorum:86

Q5KP36              	100.00%		H3HDB9              	100.00%
Bootstrap support for Q5KP36 as seed ortholog is 100%.
Bootstrap support for H3HDB9 as seed ortholog is 100%.

Group of orthologs #1730. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KNI3              	100.00%		H3GUU9              	100.00%
                    	       		H3H326              	9.32%
                    	       		H3G7R2              	9.32%
Bootstrap support for Q5KNI3 as seed ortholog is 100%.
Bootstrap support for H3GUU9 as seed ortholog is 100%.

Group of orthologs #1731. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KD02              	100.00%		H3GBA4              	100.00%
                    	       		H3H0H0              	61.48%
Bootstrap support for Q5KD02 as seed ortholog is 100%.
Bootstrap support for H3GBA4 as seed ortholog is 100%.

Group of orthologs #1732. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KJE9              	100.00%		H3HE77              	100.00%
                    	       		H3HE76              	6.96%
Bootstrap support for Q5KJE9 as seed ortholog is 100%.
Bootstrap support for H3HE77 as seed ortholog is 100%.

Group of orthologs #1733. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KL63              	100.00%		H3G783              	100.00%
Bootstrap support for Q5KL63 as seed ortholog is 100%.
Bootstrap support for H3G783 as seed ortholog is 100%.

Group of orthologs #1734. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KJP0              	100.00%		H3GAA3              	100.00%
Bootstrap support for Q5KJP0 as seed ortholog is 100%.
Bootstrap support for H3GAA3 as seed ortholog is 100%.

Group of orthologs #1735. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5K9F9              	100.00%		H3GKI1              	100.00%
Bootstrap support for Q5K9F9 as seed ortholog is 100%.
Bootstrap support for H3GKI1 as seed ortholog is 100%.

Group of orthologs #1736. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KL70              	100.00%		H3GIJ7              	100.00%
Bootstrap support for Q5KL70 as seed ortholog is 100%.
Bootstrap support for H3GIJ7 as seed ortholog is 100%.

Group of orthologs #1737. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KMD8              	100.00%		H3GRN5              	100.00%
Bootstrap support for Q5KMD8 as seed ortholog is 100%.
Bootstrap support for H3GRN5 as seed ortholog is 100%.

Group of orthologs #1738. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KGS8              	100.00%		H3GXK1              	100.00%
Bootstrap support for Q5KGS8 as seed ortholog is 100%.
Bootstrap support for H3GXK1 as seed ortholog is 100%.

Group of orthologs #1739. Best score 85 bits
Score difference with first non-orthologous sequence - C.neoformans:85 P.ramorum:85

Q5KPW8              	100.00%		H3H1R0              	100.00%
Bootstrap support for Q5KPW8 as seed ortholog is 100%.
Bootstrap support for H3H1R0 as seed ortholog is 100%.

Group of orthologs #1740. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

Q5KD49              	100.00%		H3GW94              	100.00%
                    	       		H3H4D2              	100.00%
Bootstrap support for Q5KD49 as seed ortholog is 100%.
Bootstrap support for H3GW94 as seed ortholog is 100%.
Bootstrap support for H3H4D2 as seed ortholog is 100%.

Group of orthologs #1741. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

P0CN06              	100.00%		H3G9A2              	100.00%
Bootstrap support for P0CN06 as seed ortholog is 100%.
Bootstrap support for H3G9A2 as seed ortholog is 100%.

Group of orthologs #1742. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

Q5KJE8              	100.00%		H3G8X9              	100.00%
Bootstrap support for Q5KJE8 as seed ortholog is 100%.
Bootstrap support for H3G8X9 as seed ortholog is 100%.

Group of orthologs #1743. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

Q5KGT2              	100.00%		H3GCJ4              	100.00%
Bootstrap support for Q5KGT2 as seed ortholog is 100%.
Bootstrap support for H3GCJ4 as seed ortholog is 100%.

Group of orthologs #1744. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

Q5KDT1              	100.00%		H3GHD2              	100.00%
Bootstrap support for Q5KDT1 as seed ortholog is 100%.
Bootstrap support for H3GHD2 as seed ortholog is 100%.

Group of orthologs #1745. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:20

Q5KKF8              	100.00%		H3GGV1              	100.00%
Bootstrap support for Q5KKF8 as seed ortholog is 100%.
Bootstrap support for H3GGV1 as seed ortholog is 76%.

Group of orthologs #1746. Best score 84 bits
Score difference with first non-orthologous sequence - C.neoformans:84 P.ramorum:84

Q5K7J1              	100.00%		H3HD16              	100.00%
Bootstrap support for Q5K7J1 as seed ortholog is 100%.
Bootstrap support for H3HD16 as seed ortholog is 100%.

Group of orthologs #1747. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:8 P.ramorum:83

Q5KK76              	100.00%		H3HDW9              	100.00%
Q5KDS4              	14.08%		
Q5KBM7              	7.59%		
Bootstrap support for Q5KK76 as seed ortholog is 60%.
Alternative seed ortholog is Q5KA86 (8 bits away from this cluster)
Bootstrap support for H3HDW9 as seed ortholog is 100%.

Group of orthologs #1748. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.ramorum:83

Q5KLG3              	100.00%		H3G6D7              	100.00%
Bootstrap support for Q5KLG3 as seed ortholog is 100%.
Bootstrap support for H3G6D7 as seed ortholog is 100%.

Group of orthologs #1749. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.ramorum:0

Q5KK38              	100.00%		H3GCF9              	100.00%
Bootstrap support for Q5KK38 as seed ortholog is 100%.
Bootstrap support for H3GCF9 as seed ortholog is 50%.
Alternative seed ortholog is H3GHB2 (0 bits away from this cluster)

Group of orthologs #1750. Best score 83 bits
Score difference with first non-orthologous sequence - C.neoformans:83 P.ramorum:83

Q5K811              	100.00%		H3GVJ5              	100.00%
Bootstrap support for Q5K811 as seed ortholog is 100%.
Bootstrap support for H3GVJ5 as seed ortholog is 100%.

Group of orthologs #1751. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KLX4              	100.00%		H3GA35              	100.00%
Q5K9M6              	47.14%		H3GTL0              	30.34%
Q5KH93              	18.65%		H3H2N4              	30.34%
                    	       		H3GTL1              	28.48%
Bootstrap support for Q5KLX4 as seed ortholog is 100%.
Bootstrap support for H3GA35 as seed ortholog is 100%.

Group of orthologs #1752. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KAD9              	100.00%		H3GCZ2              	100.00%
Bootstrap support for Q5KAD9 as seed ortholog is 100%.
Bootstrap support for H3GCZ2 as seed ortholog is 100%.

Group of orthologs #1753. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KPK7              	100.00%		H3G781              	100.00%
Bootstrap support for Q5KPK7 as seed ortholog is 100%.
Bootstrap support for H3G781 as seed ortholog is 100%.

Group of orthologs #1754. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.ramorum:82

Q5KFD1              	100.00%		H3GGQ0              	100.00%
Bootstrap support for Q5KFD1 as seed ortholog is 47%.
Alternative seed ortholog is Q5KFN1 (1 bits away from this cluster)
Bootstrap support for H3GGQ0 as seed ortholog is 100%.

Group of orthologs #1755. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

P0CM90              	100.00%		H3GZL3              	100.00%
Bootstrap support for P0CM90 as seed ortholog is 100%.
Bootstrap support for H3GZL3 as seed ortholog is 100%.

Group of orthologs #1756. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KMK7              	100.00%		H3GP02              	100.00%
Bootstrap support for Q5KMK7 as seed ortholog is 100%.
Bootstrap support for H3GP02 as seed ortholog is 100%.

Group of orthologs #1757. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KG76              	100.00%		H3GY73              	100.00%
Bootstrap support for Q5KG76 as seed ortholog is 100%.
Bootstrap support for H3GY73 as seed ortholog is 100%.

Group of orthologs #1758. Best score 82 bits
Score difference with first non-orthologous sequence - C.neoformans:82 P.ramorum:82

Q5KNL8              	100.00%		H3HDU6              	100.00%
Bootstrap support for Q5KNL8 as seed ortholog is 100%.
Bootstrap support for H3HDU6 as seed ortholog is 100%.

Group of orthologs #1759. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5KG86              	100.00%		H3GJ58              	100.00%
Q5KG85              	100.00%		H3H9X8              	100.00%
Q5KMQ6              	6.78%		H3H161              	31.24%
Bootstrap support for Q5KG86 as seed ortholog is 100%.
Bootstrap support for Q5KG85 as seed ortholog is 100%.
Bootstrap support for H3GJ58 as seed ortholog is 100%.
Bootstrap support for H3H9X8 as seed ortholog is 100%.

Group of orthologs #1760. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:23

Q5K719              	100.00%		H3GZI0              	100.00%
                    	       		H3GRW8              	8.97%
Bootstrap support for Q5K719 as seed ortholog is 100%.
Bootstrap support for H3GZI0 as seed ortholog is 70%.
Alternative seed ortholog is H3GBW3 (23 bits away from this cluster)

Group of orthologs #1761. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5KHJ3              	100.00%		H3G5A1              	100.00%
Bootstrap support for Q5KHJ3 as seed ortholog is 100%.
Bootstrap support for H3G5A1 as seed ortholog is 100%.

Group of orthologs #1762. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

P0CR82              	100.00%		H3GH26              	100.00%
Bootstrap support for P0CR82 as seed ortholog is 100%.
Bootstrap support for H3GH26 as seed ortholog is 100%.

Group of orthologs #1763. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5K9N5              	100.00%		H3GGU1              	100.00%
Bootstrap support for Q5K9N5 as seed ortholog is 100%.
Bootstrap support for H3GGU1 as seed ortholog is 100%.

Group of orthologs #1764. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

P0CN34              	100.00%		H3GQV2              	100.00%
Bootstrap support for P0CN34 as seed ortholog is 100%.
Bootstrap support for H3GQV2 as seed ortholog is 100%.

Group of orthologs #1765. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5KKR2              	100.00%		H3GCQ9              	100.00%
Bootstrap support for Q5KKR2 as seed ortholog is 100%.
Bootstrap support for H3GCQ9 as seed ortholog is 100%.

Group of orthologs #1766. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5KIV2              	100.00%		H3GH20              	100.00%
Bootstrap support for Q5KIV2 as seed ortholog is 100%.
Bootstrap support for H3GH20 as seed ortholog is 100%.

Group of orthologs #1767. Best score 81 bits
Score difference with first non-orthologous sequence - C.neoformans:81 P.ramorum:81

Q5KAG6              	100.00%		H3GWX5              	100.00%
Bootstrap support for Q5KAG6 as seed ortholog is 100%.
Bootstrap support for H3GWX5 as seed ortholog is 100%.

Group of orthologs #1768. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.ramorum:80

Q5KJD9              	100.00%		H3GHN6              	100.00%
Q5KPJ0              	13.53%		
Bootstrap support for Q5KJD9 as seed ortholog is 100%.
Bootstrap support for H3GHN6 as seed ortholog is 100%.

Group of orthologs #1769. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.ramorum:80

Q5K8V4              	100.00%		H3GVB3              	100.00%
Bootstrap support for Q5K8V4 as seed ortholog is 100%.
Bootstrap support for H3GVB3 as seed ortholog is 100%.

Group of orthologs #1770. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.ramorum:80

Q5KIH8              	100.00%		H3GR00              	100.00%
Bootstrap support for Q5KIH8 as seed ortholog is 100%.
Bootstrap support for H3GR00 as seed ortholog is 100%.

Group of orthologs #1771. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.ramorum:80

Q5KLE1              	100.00%		H3H2G6              	100.00%
Bootstrap support for Q5KLE1 as seed ortholog is 100%.
Bootstrap support for H3H2G6 as seed ortholog is 100%.

Group of orthologs #1772. Best score 80 bits
Score difference with first non-orthologous sequence - C.neoformans:80 P.ramorum:80

Q5KK26              	100.00%		H3HEC2              	100.00%
Bootstrap support for Q5KK26 as seed ortholog is 100%.
Bootstrap support for H3HEC2 as seed ortholog is 100%.

Group of orthologs #1773. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KIY1              	100.00%		H3G9V5              	100.00%
                    	       		H3G8S4              	75.19%
                    	       		H3GVQ3              	8.53%
Bootstrap support for Q5KIY1 as seed ortholog is 100%.
Bootstrap support for H3G9V5 as seed ortholog is 100%.

Group of orthologs #1774. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KH89              	100.00%		H3GPK3              	100.00%
                    	       		H3GPK5              	42.19%
Bootstrap support for Q5KH89 as seed ortholog is 100%.
Bootstrap support for H3GPK3 as seed ortholog is 100%.

Group of orthologs #1775. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KA93              	100.00%		H3GC99              	100.00%
Bootstrap support for Q5KA93 as seed ortholog is 100%.
Bootstrap support for H3GC99 as seed ortholog is 100%.

Group of orthologs #1776. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KD43              	100.00%		H3GEF9              	100.00%
Bootstrap support for Q5KD43 as seed ortholog is 100%.
Bootstrap support for H3GEF9 as seed ortholog is 100%.

Group of orthologs #1777. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KIX6              	100.00%		H3G9A4              	100.00%
Bootstrap support for Q5KIX6 as seed ortholog is 100%.
Bootstrap support for H3G9A4 as seed ortholog is 100%.

Group of orthologs #1778. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:34

Q5K8W4              	100.00%		H3GKQ4              	100.00%
Bootstrap support for Q5K8W4 as seed ortholog is 100%.
Bootstrap support for H3GKQ4 as seed ortholog is 75%.

Group of orthologs #1779. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

P0CQ44              	100.00%		H3GSG9              	100.00%
Bootstrap support for P0CQ44 as seed ortholog is 100%.
Bootstrap support for H3GSG9 as seed ortholog is 100%.

Group of orthologs #1780. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KL85              	100.00%		H3GID5              	100.00%
Bootstrap support for Q5KL85 as seed ortholog is 100%.
Bootstrap support for H3GID5 as seed ortholog is 100%.

Group of orthologs #1781. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KLA5              	100.00%		H3GJ54              	100.00%
Bootstrap support for Q5KLA5 as seed ortholog is 100%.
Bootstrap support for H3GJ54 as seed ortholog is 100%.

Group of orthologs #1782. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5K958              	100.00%		H3GXG3              	100.00%
Bootstrap support for Q5K958 as seed ortholog is 100%.
Bootstrap support for H3GXG3 as seed ortholog is 100%.

Group of orthologs #1783. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KIS8              	100.00%		H3GX10              	100.00%
Bootstrap support for Q5KIS8 as seed ortholog is 100%.
Bootstrap support for H3GX10 as seed ortholog is 100%.

Group of orthologs #1784. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KJU3              	100.00%		H3H1L3              	100.00%
Bootstrap support for Q5KJU3 as seed ortholog is 100%.
Bootstrap support for H3H1L3 as seed ortholog is 100%.

Group of orthologs #1785. Best score 79 bits
Score difference with first non-orthologous sequence - C.neoformans:79 P.ramorum:79

Q5KKU7              	100.00%		H3HBP3              	100.00%
Bootstrap support for Q5KKU7 as seed ortholog is 100%.
Bootstrap support for H3HBP3 as seed ortholog is 100%.

Group of orthologs #1786. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:78

Q5KCB0              	100.00%		H3GJJ8              	100.00%
Q5KMC9              	19.63%		H3GJJ9              	49.35%
                    	       		H3GRF1              	38.53%
                    	       		H3GRF4              	36.80%
                    	       		H3GRE6              	34.49%
                    	       		H3GJJ7              	33.62%
                    	       		H3GRF3              	32.61%
                    	       		H3GRF2              	28.72%
                    	       		H3GJK0              	25.11%
                    	       		H3GRE5              	8.37%
Bootstrap support for Q5KCB0 as seed ortholog is 100%.
Bootstrap support for H3GJJ8 as seed ortholog is 100%.

Group of orthologs #1787. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:34

P0CS18              	100.00%		H3G8Q9              	100.00%
Bootstrap support for P0CS18 as seed ortholog is 100%.
Bootstrap support for H3G8Q9 as seed ortholog is 99%.

Group of orthologs #1788. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:34

Q5K8A9              	100.00%		H3GH42              	100.00%
Bootstrap support for Q5K8A9 as seed ortholog is 100%.
Bootstrap support for H3GH42 as seed ortholog is 96%.

Group of orthologs #1789. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:78

Q5K7S6              	100.00%		H3HAQ1              	100.00%
Bootstrap support for Q5K7S6 as seed ortholog is 100%.
Bootstrap support for H3HAQ1 as seed ortholog is 100%.

Group of orthologs #1790. Best score 78 bits
Score difference with first non-orthologous sequence - C.neoformans:78 P.ramorum:78

Q5KL25              	100.00%		H3GZK0              	100.00%
Bootstrap support for Q5KL25 as seed ortholog is 100%.
Bootstrap support for H3GZK0 as seed ortholog is 100%.

Group of orthologs #1791. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5KI52              	100.00%		H3GL54              	100.00%
                    	       		H3GLA7              	100.00%
                    	       		H3GBU8              	83.81%
                    	       		H3GLA2              	63.00%
                    	       		H3GLA3              	61.70%
                    	       		H3GHD6              	50.35%
                    	       		H3GTH2              	12.53%
Bootstrap support for Q5KI52 as seed ortholog is 100%.
Bootstrap support for H3GL54 as seed ortholog is 100%.
Bootstrap support for H3GLA7 as seed ortholog is 100%.

Group of orthologs #1792. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

P0CS26              	100.00%		H3GN47              	100.00%
                    	       		H3GN46              	20.07%
                    	       		H3GGL2              	5.25%
Bootstrap support for P0CS26 as seed ortholog is 100%.
Bootstrap support for H3GN47 as seed ortholog is 100%.

Group of orthologs #1793. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5K8Y9              	100.00%		H3GPN6              	100.00%
Bootstrap support for Q5K8Y9 as seed ortholog is 100%.
Bootstrap support for H3GPN6 as seed ortholog is 100%.

Group of orthologs #1794. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5KH87              	100.00%		H3GJT1              	100.00%
Bootstrap support for Q5KH87 as seed ortholog is 100%.
Bootstrap support for H3GJT1 as seed ortholog is 100%.

Group of orthologs #1795. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5KFE6              	100.00%		H3GLV7              	100.00%
Bootstrap support for Q5KFE6 as seed ortholog is 100%.
Bootstrap support for H3GLV7 as seed ortholog is 100%.

Group of orthologs #1796. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5KPR9              	100.00%		H3GTT9              	100.00%
Bootstrap support for Q5KPR9 as seed ortholog is 100%.
Bootstrap support for H3GTT9 as seed ortholog is 100%.

Group of orthologs #1797. Best score 77 bits
Score difference with first non-orthologous sequence - C.neoformans:77 P.ramorum:77

Q5KPM7              	100.00%		H3H0P5              	100.00%
Bootstrap support for Q5KPM7 as seed ortholog is 100%.
Bootstrap support for H3H0P5 as seed ortholog is 100%.

Group of orthologs #1798. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5KG17              	100.00%		H3H5C4              	100.00%
Q5KA12              	81.52%		H3H4X6              	86.82%
Q5KAY6              	73.73%		H3H4X4              	44.56%
Q5K6S6              	56.47%		H3H7T4              	40.35%
Q5KD22              	56.18%		H3H8C9              	38.36%
Q5KHG9              	56.08%		H3H5C5              	34.83%
Q5KFZ9              	47.50%		H3H9A0              	34.68%
                    	       		H3GHK9              	31.72%
                    	       		H3GYC6              	30.59%
                    	       		H3H4X5              	28.27%
                    	       		H3GYD1              	27.52%
                    	       		H3GYD4              	20.91%
                    	       		H3H8H1              	18.66%
                    	       		H3GYD5              	17.61%
                    	       		H3H6I1              	14.90%
Bootstrap support for Q5KG17 as seed ortholog is 100%.
Bootstrap support for H3H5C4 as seed ortholog is 100%.

Group of orthologs #1799. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:4 P.ramorum:76

Q5K9K6              	100.00%		H3GKK5              	100.00%
Q5K995              	7.19%		
Bootstrap support for Q5K9K6 as seed ortholog is 77%.
Bootstrap support for H3GKK5 as seed ortholog is 100%.

Group of orthologs #1800. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

P0CO30              	100.00%		H3G550              	100.00%
Bootstrap support for P0CO30 as seed ortholog is 100%.
Bootstrap support for H3G550 as seed ortholog is 100%.

Group of orthologs #1801. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:34

Q5KNT2              	100.00%		H3G7V9              	100.00%
Bootstrap support for Q5KNT2 as seed ortholog is 100%.
Bootstrap support for H3G7V9 as seed ortholog is 99%.

Group of orthologs #1802. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5K6Y2              	100.00%		H3GS75              	100.00%
Bootstrap support for Q5K6Y2 as seed ortholog is 100%.
Bootstrap support for H3GS75 as seed ortholog is 100%.

Group of orthologs #1803. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5K9B7              	100.00%		H3GT07              	100.00%
Bootstrap support for Q5K9B7 as seed ortholog is 100%.
Bootstrap support for H3GT07 as seed ortholog is 100%.

Group of orthologs #1804. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5KC16              	100.00%		H3GZT7              	100.00%
Bootstrap support for Q5KC16 as seed ortholog is 100%.
Bootstrap support for H3GZT7 as seed ortholog is 100%.

Group of orthologs #1805. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5K865              	100.00%		H3HB50              	100.00%
Bootstrap support for Q5K865 as seed ortholog is 100%.
Bootstrap support for H3HB50 as seed ortholog is 100%.

Group of orthologs #1806. Best score 76 bits
Score difference with first non-orthologous sequence - C.neoformans:76 P.ramorum:76

Q5KJX2              	100.00%		H3H1G3              	100.00%
Bootstrap support for Q5KJX2 as seed ortholog is 100%.
Bootstrap support for H3H1G3 as seed ortholog is 100%.

Group of orthologs #1807. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.ramorum:75

Q5KLI5              	100.00%		H3GAA4              	100.00%
                    	       		H3GT84              	35.68%
                    	       		H3H2Q1              	8.81%
Bootstrap support for Q5KLI5 as seed ortholog is 100%.
Bootstrap support for H3GAA4 as seed ortholog is 100%.

Group of orthologs #1808. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.ramorum:75

Q5KJ14              	100.00%		H3GIA2              	100.00%
Bootstrap support for Q5KJ14 as seed ortholog is 100%.
Bootstrap support for H3GIA2 as seed ortholog is 100%.

Group of orthologs #1809. Best score 75 bits
Score difference with first non-orthologous sequence - C.neoformans:75 P.ramorum:75

Q5KPD3              	100.00%		H3GYK3              	100.00%
Bootstrap support for Q5KPD3 as seed ortholog is 100%.
Bootstrap support for H3GYK3 as seed ortholog is 100%.

Group of orthologs #1810. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:15

Q5K9Q9              	100.00%		H3GAG2              	100.00%
                    	       		H3GAV4              	33.86%
                    	       		H3G6P5              	14.26%
                    	       		H3G6P4              	13.86%
                    	       		H3G6B7              	10.69%
                    	       		H3G5T5              	8.12%
Bootstrap support for Q5K9Q9 as seed ortholog is 100%.
Bootstrap support for H3GAG2 as seed ortholog is 66%.
Alternative seed ortholog is H3G6T0 (15 bits away from this cluster)

Group of orthologs #1811. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KAE8              	100.00%		H3GE21              	100.00%
                    	       		H3H7P4              	57.53%
Bootstrap support for Q5KAE8 as seed ortholog is 100%.
Bootstrap support for H3GE21 as seed ortholog is 100%.

Group of orthologs #1812. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KLS9              	100.00%		H3GAY5              	100.00%
                    	       		H3H4T8              	100.00%
Bootstrap support for Q5KLS9 as seed ortholog is 100%.
Bootstrap support for H3GAY5 as seed ortholog is 100%.
Bootstrap support for H3H4T8 as seed ortholog is 100%.

Group of orthologs #1813. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5K845              	100.00%		H3GG59              	100.00%
Bootstrap support for Q5K845 as seed ortholog is 100%.
Bootstrap support for H3GG59 as seed ortholog is 100%.

Group of orthologs #1814. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KDV9              	100.00%		H3GBN0              	100.00%
Bootstrap support for Q5KDV9 as seed ortholog is 100%.
Bootstrap support for H3GBN0 as seed ortholog is 100%.

Group of orthologs #1815. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KG38              	100.00%		H3GBT9              	100.00%
Bootstrap support for Q5KG38 as seed ortholog is 100%.
Bootstrap support for H3GBT9 as seed ortholog is 100%.

Group of orthologs #1816. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5K8D9              	100.00%		H3GJP6              	100.00%
Bootstrap support for Q5K8D9 as seed ortholog is 100%.
Bootstrap support for H3GJP6 as seed ortholog is 100%.

Group of orthologs #1817. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KAC1              	100.00%		H3H3Q8              	100.00%
Bootstrap support for Q5KAC1 as seed ortholog is 100%.
Bootstrap support for H3H3Q8 as seed ortholog is 100%.

Group of orthologs #1818. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KJC8              	100.00%		H3H1H4              	100.00%
Bootstrap support for Q5KJC8 as seed ortholog is 100%.
Bootstrap support for H3H1H4 as seed ortholog is 100%.

Group of orthologs #1819. Best score 74 bits
Score difference with first non-orthologous sequence - C.neoformans:74 P.ramorum:74

Q5KM41              	100.00%		H3H1L6              	100.00%
Bootstrap support for Q5KM41 as seed ortholog is 100%.
Bootstrap support for H3H1L6 as seed ortholog is 100%.

Group of orthologs #1820. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.ramorum:73

Q5KID6              	100.00%		H3GAC4              	100.00%
Bootstrap support for Q5KID6 as seed ortholog is 100%.
Bootstrap support for H3GAC4 as seed ortholog is 100%.

Group of orthologs #1821. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.ramorum:73

Q5KBN5              	100.00%		H3GU61              	100.00%
Bootstrap support for Q5KBN5 as seed ortholog is 100%.
Bootstrap support for H3GU61 as seed ortholog is 100%.

Group of orthologs #1822. Best score 73 bits
Score difference with first non-orthologous sequence - C.neoformans:73 P.ramorum:73

Q5KB29              	100.00%		H3GX90              	100.00%
Bootstrap support for Q5KB29 as seed ortholog is 100%.
Bootstrap support for H3GX90 as seed ortholog is 100%.

Group of orthologs #1823. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5K8F3              	100.00%		H3GML0              	100.00%
                    	       		H3GML1              	44.49%
                    	       		H3G4Z4              	26.25%
                    	       		H3GZR3              	15.43%
Bootstrap support for Q5K8F3 as seed ortholog is 100%.
Bootstrap support for H3GML0 as seed ortholog is 100%.

Group of orthologs #1824. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KCE0              	100.00%		H3GLF2              	100.00%
                    	       		H3GK22              	15.12%
Bootstrap support for Q5KCE0 as seed ortholog is 100%.
Bootstrap support for H3GLF2 as seed ortholog is 100%.

Group of orthologs #1825. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KGR3              	100.00%		H3GYH6              	100.00%
                    	       		H3H9Z6              	49.95%
Bootstrap support for Q5KGR3 as seed ortholog is 100%.
Bootstrap support for H3GYH6 as seed ortholog is 100%.

Group of orthologs #1826. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KCY0              	100.00%		H3GGZ8              	100.00%
Bootstrap support for Q5KCY0 as seed ortholog is 100%.
Bootstrap support for H3GGZ8 as seed ortholog is 100%.

Group of orthologs #1827. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:5

Q5KIE9              	100.00%		H3GES3              	100.00%
Bootstrap support for Q5KIE9 as seed ortholog is 100%.
Bootstrap support for H3GES3 as seed ortholog is 16%.
Alternative seed ortholog is H3GUD7 (5 bits away from this cluster)

Group of orthologs #1828. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KHE4              	100.00%		H3GML8              	100.00%
Bootstrap support for Q5KHE4 as seed ortholog is 100%.
Bootstrap support for H3GML8 as seed ortholog is 100%.

Group of orthologs #1829. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

P0CM86              	100.00%		H3H2J2              	100.00%
Bootstrap support for P0CM86 as seed ortholog is 100%.
Bootstrap support for H3H2J2 as seed ortholog is 100%.

Group of orthologs #1830. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

P0CR92              	100.00%		H3H2K5              	100.00%
Bootstrap support for P0CR92 as seed ortholog is 100%.
Bootstrap support for H3H2K5 as seed ortholog is 100%.

Group of orthologs #1831. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KCE2              	100.00%		H3H2I1              	100.00%
Bootstrap support for Q5KCE2 as seed ortholog is 100%.
Bootstrap support for H3H2I1 as seed ortholog is 100%.

Group of orthologs #1832. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KLA0              	100.00%		H3GUZ8              	100.00%
Bootstrap support for Q5KLA0 as seed ortholog is 100%.
Bootstrap support for H3GUZ8 as seed ortholog is 100%.

Group of orthologs #1833. Best score 72 bits
Score difference with first non-orthologous sequence - C.neoformans:72 P.ramorum:72

Q5KPT6              	100.00%		H3HAV3              	100.00%
Bootstrap support for Q5KPT6 as seed ortholog is 100%.
Bootstrap support for H3HAV3 as seed ortholog is 100%.

Group of orthologs #1834. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:71

Q5KEC5              	100.00%		H3H434              	100.00%
                    	       		H3H056              	99.62%
Bootstrap support for Q5KEC5 as seed ortholog is 100%.
Bootstrap support for H3H434 as seed ortholog is 100%.

Group of orthologs #1835. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:71

Q5KFL5              	100.00%		H3G6K1              	100.00%
Bootstrap support for Q5KFL5 as seed ortholog is 100%.
Bootstrap support for H3G6K1 as seed ortholog is 100%.

Group of orthologs #1836. Best score 71 bits
Score difference with first non-orthologous sequence - C.neoformans:71 P.ramorum:71

Q5KJJ0              	100.00%		H3G7X7              	100.00%
Bootstrap support for Q5KJJ0 as seed ortholog is 100%.
Bootstrap support for H3G7X7 as seed ortholog is 100%.

Group of orthologs #1837. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:70

Q5K7G5              	100.00%		H3GQW3              	100.00%
                    	       		H3GQX1              	42.33%
                    	       		H3GQW4              	42.12%
                    	       		H3GQX3              	34.98%
Bootstrap support for Q5K7G5 as seed ortholog is 100%.
Bootstrap support for H3GQW3 as seed ortholog is 100%.

Group of orthologs #1838. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:70

Q5KE85              	100.00%		H3GE15              	100.00%
Bootstrap support for Q5KE85 as seed ortholog is 100%.
Bootstrap support for H3GE15 as seed ortholog is 100%.

Group of orthologs #1839. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:70

Q5KL80              	100.00%		H3GA41              	100.00%
Bootstrap support for Q5KL80 as seed ortholog is 100%.
Bootstrap support for H3GA41 as seed ortholog is 100%.

Group of orthologs #1840. Best score 70 bits
Score difference with first non-orthologous sequence - C.neoformans:70 P.ramorum:70

Q5KK55              	100.00%		H3H1L1              	100.00%
Bootstrap support for Q5KK55 as seed ortholog is 100%.
Bootstrap support for H3H1L1 as seed ortholog is 100%.

Group of orthologs #1841. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.ramorum:69

Q5KI51              	100.00%		H3G538              	100.00%
Bootstrap support for Q5KI51 as seed ortholog is 100%.
Bootstrap support for H3G538 as seed ortholog is 100%.

Group of orthologs #1842. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.ramorum:69

P0CM06              	100.00%		H3GS60              	100.00%
Bootstrap support for P0CM06 as seed ortholog is 100%.
Bootstrap support for H3GS60 as seed ortholog is 100%.

Group of orthologs #1843. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.ramorum:69

Q5KAW3              	100.00%		H3GMP8              	100.00%
Bootstrap support for Q5KAW3 as seed ortholog is 100%.
Bootstrap support for H3GMP8 as seed ortholog is 100%.

Group of orthologs #1844. Best score 69 bits
Score difference with first non-orthologous sequence - C.neoformans:69 P.ramorum:69

Q5KCH9              	100.00%		H3GM94              	100.00%
Bootstrap support for Q5KCH9 as seed ortholog is 100%.
Bootstrap support for H3GM94 as seed ortholog is 100%.

Group of orthologs #1845. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

Q5K9B3              	100.00%		H3GWW8              	100.00%
                    	       		H3H258              	100.00%
Bootstrap support for Q5K9B3 as seed ortholog is 100%.
Bootstrap support for H3GWW8 as seed ortholog is 100%.
Bootstrap support for H3H258 as seed ortholog is 100%.

Group of orthologs #1846. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

Q5KA20              	100.00%		H3G549              	100.00%
Bootstrap support for Q5KA20 as seed ortholog is 100%.
Bootstrap support for H3G549 as seed ortholog is 100%.

Group of orthologs #1847. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

P0CQ32              	100.00%		H3GMW3              	100.00%
Bootstrap support for P0CQ32 as seed ortholog is 100%.
Bootstrap support for H3GMW3 as seed ortholog is 100%.

Group of orthologs #1848. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

Q5KPI9              	100.00%		H3GFE8              	100.00%
Bootstrap support for Q5KPI9 as seed ortholog is 100%.
Bootstrap support for H3GFE8 as seed ortholog is 100%.

Group of orthologs #1849. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

Q5KE80              	100.00%		H3GWZ0              	100.00%
Bootstrap support for Q5KE80 as seed ortholog is 100%.
Bootstrap support for H3GWZ0 as seed ortholog is 100%.

Group of orthologs #1850. Best score 68 bits
Score difference with first non-orthologous sequence - C.neoformans:68 P.ramorum:68

Q5KLF0              	100.00%		H3GXK3              	100.00%
Bootstrap support for Q5KLF0 as seed ortholog is 100%.
Bootstrap support for H3GXK3 as seed ortholog is 100%.

Group of orthologs #1851. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KBN3              	100.00%		H3GJF6              	100.00%
                    	       		H3GJF7              	32.45%
                    	       		H3GDB1              	22.78%
                    	       		H3GJF5              	20.75%
                    	       		H3GJR5              	13.42%
                    	       		H3GJR4              	12.32%
Bootstrap support for Q5KBN3 as seed ortholog is 100%.
Bootstrap support for H3GJF6 as seed ortholog is 100%.

Group of orthologs #1852. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:7

Q5KCP9              	100.00%		H3GJ12              	100.00%
                    	       		H3G6I8              	77.68%
Bootstrap support for Q5KCP9 as seed ortholog is 100%.
Bootstrap support for H3GJ12 as seed ortholog is 55%.
Alternative seed ortholog is H3GS41 (7 bits away from this cluster)

Group of orthologs #1853. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KDB8              	100.00%		H3G8W9              	100.00%
Bootstrap support for Q5KDB8 as seed ortholog is 100%.
Bootstrap support for H3G8W9 as seed ortholog is 100%.

Group of orthologs #1854. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KPF0              	100.00%		H3GBG7              	100.00%
Bootstrap support for Q5KPF0 as seed ortholog is 100%.
Bootstrap support for H3GBG7 as seed ortholog is 100%.

Group of orthologs #1855. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KDS9              	100.00%		H3HBA1              	100.00%
Bootstrap support for Q5KDS9 as seed ortholog is 100%.
Bootstrap support for H3HBA1 as seed ortholog is 100%.

Group of orthologs #1856. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KFM1              	100.00%		H3HAY7              	100.00%
Bootstrap support for Q5KFM1 as seed ortholog is 100%.
Bootstrap support for H3HAY7 as seed ortholog is 100%.

Group of orthologs #1857. Best score 67 bits
Score difference with first non-orthologous sequence - C.neoformans:67 P.ramorum:67

Q5KJM0              	100.00%		H3HB54              	100.00%
Bootstrap support for Q5KJM0 as seed ortholog is 100%.
Bootstrap support for H3HB54 as seed ortholog is 100%.

Group of orthologs #1858. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.ramorum:66

Q5KKN1              	100.00%		H3G742              	100.00%
                    	       		H3GSY9              	74.82%
                    	       		H3GSY3              	70.07%
                    	       		H3HCB8              	69.83%
                    	       		H3GB18              	66.27%
                    	       		H3G9Q5              	65.80%
                    	       		H3GB24              	65.08%
                    	       		H3G9Q4              	64.85%
                    	       		H3H9X5              	64.61%
                    	       		H3G9Q6              	60.33%
                    	       		H3G9Q3              	56.06%
                    	       		H3H741              	48.69%
                    	       		H3GSY4              	46.56%
                    	       		H3H297              	45.37%
                    	       		H3H296              	43.71%
                    	       		H3GSY8              	43.47%
                    	       		H3H298              	43.23%
                    	       		H3GAN8              	40.38%
                    	       		H3GAN6              	40.14%
                    	       		H3GAN4              	39.43%
                    	       		H3GAN7              	38.24%
                    	       		H3GAN5              	38.24%
                    	       		H3G8F8              	38.00%
                    	       		H3GAJ3              	33.49%
                    	       		H3GAJ4              	32.54%
                    	       		H3H8L5              	31.83%
Bootstrap support for Q5KKN1 as seed ortholog is 100%.
Bootstrap support for H3G742 as seed ortholog is 100%.

Group of orthologs #1859. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.ramorum:66

Q5K9N4              	100.00%		H3G6J0              	100.00%
Bootstrap support for Q5K9N4 as seed ortholog is 100%.
Bootstrap support for H3G6J0 as seed ortholog is 100%.

Group of orthologs #1860. Best score 66 bits
Score difference with first non-orthologous sequence - C.neoformans:66 P.ramorum:66

Q5KE91              	100.00%		H3GEA7              	100.00%
Bootstrap support for Q5KE91 as seed ortholog is 100%.
Bootstrap support for H3GEA7 as seed ortholog is 100%.

Group of orthologs #1861. Best score 65 bits
Score difference with first non-orthologous sequence - C.neoformans:65 P.ramorum:65

P0CO96              	100.00%		H3GDL3              	100.00%
Bootstrap support for P0CO96 as seed ortholog is 100%.
Bootstrap support for H3GDL3 as seed ortholog is 100%.

Group of orthologs #1862. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KMP5              	100.00%		H3GZJ3              	100.00%
Q5KLC3              	86.62%		H3H7N0              	100.00%
                    	       		H3HAJ3              	100.00%
                    	       		H3H8S0              	97.82%
                    	       		H3H8A9              	95.27%
                    	       		H3HA29              	87.52%
                    	       		H3GST5              	85.91%
                    	       		H3H646              	84.65%
                    	       		H3H922              	83.23%
                    	       		H3HAA1              	82.97%
                    	       		H3H9K0              	82.25%
                    	       		H3GN87              	80.97%
                    	       		H3H8M1              	77.48%
                    	       		H3H9W3              	71.71%
                    	       		H3H8N4              	71.48%
                    	       		H3HA19              	71.36%
                    	       		H3H997              	68.54%
                    	       		H3H9V6              	64.60%
                    	       		H3HA03              	64.38%
                    	       		H3GD66              	64.35%
                    	       		H3HA04              	63.04%
                    	       		H3H8W0              	62.99%
                    	       		H3H955              	60.71%
                    	       		H3GRT4              	59.10%
                    	       		H3H778              	47.98%
                    	       		H3H730              	47.98%
                    	       		H3H8U1              	47.98%
                    	       		H3H906              	47.98%
                    	       		H3H9J7              	47.86%
                    	       		H3H8C6              	47.86%
                    	       		H3H9R1              	47.86%
                    	       		H3H989              	47.61%
                    	       		H3H9D3              	45.85%
                    	       		H3H4L0              	45.04%
                    	       		H3H905              	28.18%
                    	       		H3H865              	10.77%
                    	       		H3H640              	10.42%
                    	       		H3H4L3              	10.41%
                    	       		H3GTF6              	8.41%
                    	       		H3GP57              	8.31%
                    	       		H3HAJ2              	8.02%
                    	       		H3H9Q4              	7.68%
                    	       		H3H5A2              	6.73%
                    	       		H3H8T3              	6.64%
                    	       		H3H4T3              	5.78%
                    	       		H3H7Y4              	5.57%
                    	       		H3H9J6              	5.04%
Bootstrap support for Q5KMP5 as seed ortholog is 100%.
Bootstrap support for H3GZJ3 as seed ortholog is 100%.
Bootstrap support for H3H7N0 as seed ortholog is 100%.
Bootstrap support for H3HAJ3 as seed ortholog is 100%.

Group of orthologs #1863. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KG58              	100.00%		H3G9T6              	100.00%
Bootstrap support for Q5KG58 as seed ortholog is 100%.
Bootstrap support for H3G9T6 as seed ortholog is 100%.

Group of orthologs #1864. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KCL2              	100.00%		H3GRS3              	100.00%
Bootstrap support for Q5KCL2 as seed ortholog is 100%.
Bootstrap support for H3GRS3 as seed ortholog is 100%.

Group of orthologs #1865. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KPX4              	100.00%		H3GJ64              	100.00%
Bootstrap support for Q5KPX4 as seed ortholog is 100%.
Bootstrap support for H3GJ64 as seed ortholog is 100%.

Group of orthologs #1866. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KIN2              	100.00%		H3GV62              	100.00%
Bootstrap support for Q5KIN2 as seed ortholog is 100%.
Bootstrap support for H3GV62 as seed ortholog is 100%.

Group of orthologs #1867. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KMM9              	100.00%		H3GS93              	100.00%
Bootstrap support for Q5KMM9 as seed ortholog is 100%.
Bootstrap support for H3GS93 as seed ortholog is 100%.

Group of orthologs #1868. Best score 64 bits
Score difference with first non-orthologous sequence - C.neoformans:64 P.ramorum:64

Q5KPR2              	100.00%		H3H421              	100.00%
Bootstrap support for Q5KPR2 as seed ortholog is 100%.
Bootstrap support for H3H421 as seed ortholog is 100%.

Group of orthologs #1869. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.ramorum:63

Q5KNF3              	100.00%		H3GWE3              	100.00%
Bootstrap support for Q5KNF3 as seed ortholog is 100%.
Bootstrap support for H3GWE3 as seed ortholog is 100%.

Group of orthologs #1870. Best score 63 bits
Score difference with first non-orthologous sequence - C.neoformans:63 P.ramorum:63

Q5KPD6              	100.00%		H3GWN0              	100.00%
Bootstrap support for Q5KPD6 as seed ortholog is 100%.
Bootstrap support for H3GWN0 as seed ortholog is 100%.

Group of orthologs #1871. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:62

Q5K7K2              	100.00%		H3G773              	100.00%
Q5KDY8              	98.71%		H3G5B6              	92.04%
Q5KCL6              	94.59%		H3G6M8              	84.43%
Q5KL71              	86.47%		H3G7G5              	50.87%
Q5K820              	15.53%		
Bootstrap support for Q5K7K2 as seed ortholog is 100%.
Bootstrap support for H3G773 as seed ortholog is 100%.

Group of orthologs #1872. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:12 P.ramorum:62

Q5KQ12              	100.00%		H3G825              	100.00%
Q5KN14              	21.36%		
Bootstrap support for Q5KQ12 as seed ortholog is 65%.
Alternative seed ortholog is Q5KMB9 (12 bits away from this cluster)
Bootstrap support for H3G825 as seed ortholog is 100%.

Group of orthologs #1873. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:62

Q5KPU2              	100.00%		H3H6U7              	100.00%
                    	       		H3H7V4              	100.00%
Bootstrap support for Q5KPU2 as seed ortholog is 100%.
Bootstrap support for H3H6U7 as seed ortholog is 100%.
Bootstrap support for H3H7V4 as seed ortholog is 100%.

Group of orthologs #1874. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:62

Q5KMP7              	100.00%		H3G722              	100.00%
Bootstrap support for Q5KMP7 as seed ortholog is 100%.
Bootstrap support for H3G722 as seed ortholog is 100%.

Group of orthologs #1875. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:62

Q5KG74              	100.00%		H3GM39              	100.00%
Bootstrap support for Q5KG74 as seed ortholog is 100%.
Bootstrap support for H3GM39 as seed ortholog is 100%.

Group of orthologs #1876. Best score 62 bits
Score difference with first non-orthologous sequence - C.neoformans:62 P.ramorum:62

Q5KCA2              	100.00%		H3HEE5              	100.00%
Bootstrap support for Q5KCA2 as seed ortholog is 100%.
Bootstrap support for H3HEE5 as seed ortholog is 100%.

Group of orthologs #1877. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:61

Q5K7D8              	100.00%		H3GCA6              	100.00%
Bootstrap support for Q5K7D8 as seed ortholog is 100%.
Bootstrap support for H3GCA6 as seed ortholog is 100%.

Group of orthologs #1878. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:61

P0CM36              	100.00%		H3GF06              	100.00%
Bootstrap support for P0CM36 as seed ortholog is 100%.
Bootstrap support for H3GF06 as seed ortholog is 100%.

Group of orthologs #1879. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:61

Q5KPL1              	100.00%		H3GGY1              	100.00%
Bootstrap support for Q5KPL1 as seed ortholog is 100%.
Bootstrap support for H3GGY1 as seed ortholog is 100%.

Group of orthologs #1880. Best score 61 bits
Score difference with first non-orthologous sequence - C.neoformans:61 P.ramorum:61

Q5KEE5              	100.00%		H3GZZ4              	100.00%
Bootstrap support for Q5KEE5 as seed ortholog is 100%.
Bootstrap support for H3GZZ4 as seed ortholog is 100%.

Group of orthologs #1881. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.ramorum:60

Q5KEI7              	100.00%		H3GLD1              	100.00%
                    	       		H3GLD2              	65.30%
                    	       		H3GES2              	63.18%
Bootstrap support for Q5KEI7 as seed ortholog is 100%.
Bootstrap support for H3GLD1 as seed ortholog is 100%.

Group of orthologs #1882. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.ramorum:60

Q5KK46              	100.00%		H3G4Y3              	100.00%
Bootstrap support for Q5KK46 as seed ortholog is 100%.
Bootstrap support for H3G4Y3 as seed ortholog is 100%.

Group of orthologs #1883. Best score 60 bits
Score difference with first non-orthologous sequence - C.neoformans:60 P.ramorum:60

Q5K8Y7              	100.00%		H3GHS4              	100.00%
Bootstrap support for Q5K8Y7 as seed ortholog is 100%.
Bootstrap support for H3GHS4 as seed ortholog is 100%.

Group of orthologs #1884. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.ramorum:59

Q5KBM4              	100.00%		H3GED6              	100.00%
Q5K9T2              	36.13%		H3GJY4              	35.20%
Q5KA87              	26.04%		
Q5KC55              	25.08%		
Q5KBE7              	24.02%		
Q5KEM4              	23.80%		
Q5KKS6              	22.32%		
Q5KKU1              	20.72%		
Q5KNP3              	18.92%		
Q5KI02              	17.11%		
Q5KHF5              	14.88%		
Q5KHX6              	13.92%		
Q5K7L4              	13.18%		
Q5K7A1              	12.75%		
Q5KPG5              	12.11%		
Q5KQ74              	11.16%		
Q5K886              	10.95%		
Q5K875              	10.95%		
Q5K7F5              	10.20%		
Q5K9A2              	10.10%		
Q5KN93              	10.10%		
Q5KNB7              	8.71%		
Q5K984              	8.50%		
Q5KC83              	8.50%		
Q5K928              	7.97%		
Q5K9X4              	7.86%		
Q5KA09              	7.65%		
Q5KAT7              	7.55%		
Q5KG03              	7.33%		
Q5KJE6              	7.12%		
Q5KEI1              	7.12%		
Q5KL40              	6.59%		
Q5KER3              	6.48%		
Q5KFK1              	6.38%		
Q5KFK2              	6.06%		
Q5KGY8              	5.95%		
Q5K860              	5.84%		
Bootstrap support for Q5KBM4 as seed ortholog is 56%.
Alternative seed ortholog is Q5KG51 (1 bits away from this cluster)
Bootstrap support for H3GED6 as seed ortholog is 100%.

Group of orthologs #1885. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KKL7              	100.00%		H3G5C2              	100.00%
                    	       		H3G6Z6              	81.71%
                    	       		H3GAF4              	72.32%
                    	       		H3H0A4              	69.19%
                    	       		H3G816              	68.53%
                    	       		H3H099              	67.22%
                    	       		H3GAF3              	67.05%
                    	       		H3H0A0              	66.72%
                    	       		H3GAF1              	64.25%
                    	       		H3G5I5              	62.93%
                    	       		H3G818              	62.11%
                    	       		H3H0A1              	60.96%
                    	       		H3H098              	59.64%
                    	       		H3GAF2              	58.32%
                    	       		H3GAF0              	56.84%
                    	       		H3H0A3              	26.69%
Bootstrap support for Q5KKL7 as seed ortholog is 100%.
Bootstrap support for H3G5C2 as seed ortholog is 100%.

Group of orthologs #1886. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5K8N5              	100.00%		H3GHZ9              	100.00%
Q5KMX0              	10.05%		
Q5K7F4              	9.12%		
Q5KJN2              	8.20%		
Q5K874              	6.00%		
Bootstrap support for Q5K8N5 as seed ortholog is 100%.
Bootstrap support for H3GHZ9 as seed ortholog is 100%.

Group of orthologs #1887. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KBW4              	100.00%		H3G8Q8              	100.00%
Q5K9Y9              	100.00%		H3GHH0              	100.00%
                    	       		H3G5Z7              	52.52%
Bootstrap support for Q5KBW4 as seed ortholog is 100%.
Bootstrap support for Q5K9Y9 as seed ortholog is 100%.
Bootstrap support for H3G8Q8 as seed ortholog is 100%.
Bootstrap support for H3GHH0 as seed ortholog is 100%.

Group of orthologs #1888. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KLF3              	100.00%		H3H5F1              	100.00%
                    	       		H3G8I8              	30.05%
Bootstrap support for Q5KLF3 as seed ortholog is 100%.
Bootstrap support for H3H5F1 as seed ortholog is 100%.

Group of orthologs #1889. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KJ18              	100.00%		H3GCZ1              	100.00%
Bootstrap support for Q5KJ18 as seed ortholog is 100%.
Bootstrap support for H3GCZ1 as seed ortholog is 100%.

Group of orthologs #1890. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5K970              	100.00%		H3GM18              	100.00%
Bootstrap support for Q5K970 as seed ortholog is 100%.
Bootstrap support for H3GM18 as seed ortholog is 100%.

Group of orthologs #1891. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KNN3              	100.00%		H3GFP1              	100.00%
Bootstrap support for Q5KNN3 as seed ortholog is 100%.
Bootstrap support for H3GFP1 as seed ortholog is 100%.

Group of orthologs #1892. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5K727              	100.00%		H3GWJ2              	100.00%
Bootstrap support for Q5K727 as seed ortholog is 100%.
Bootstrap support for H3GWJ2 as seed ortholog is 100%.

Group of orthologs #1893. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KD54              	100.00%		H3GVJ4              	100.00%
Bootstrap support for Q5KD54 as seed ortholog is 100%.
Bootstrap support for H3GVJ4 as seed ortholog is 100%.

Group of orthologs #1894. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KAX3              	100.00%		H3HBK0              	100.00%
Bootstrap support for Q5KAX3 as seed ortholog is 100%.
Bootstrap support for H3HBK0 as seed ortholog is 100%.

Group of orthologs #1895. Best score 59 bits
Score difference with first non-orthologous sequence - C.neoformans:59 P.ramorum:59

Q5KKG0              	100.00%		H3HDA4              	100.00%
Bootstrap support for Q5KKG0 as seed ortholog is 100%.
Bootstrap support for H3HDA4 as seed ortholog is 100%.

Group of orthologs #1896. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.ramorum:58

Q5KJP6              	100.00%		H3GVY2              	100.00%
                    	       		H3GVX6              	35.07%
Bootstrap support for Q5KJP6 as seed ortholog is 100%.
Bootstrap support for H3GVY2 as seed ortholog is 100%.

Group of orthologs #1897. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.ramorum:58

Q5K8S2              	100.00%		H3GAX8              	100.00%
Bootstrap support for Q5K8S2 as seed ortholog is 100%.
Bootstrap support for H3GAX8 as seed ortholog is 100%.

Group of orthologs #1898. Best score 58 bits
Score difference with first non-orthologous sequence - C.neoformans:58 P.ramorum:58

Q5KJI8              	100.00%		H3G5M1              	100.00%
Bootstrap support for Q5KJI8 as seed ortholog is 100%.
Bootstrap support for H3G5M1 as seed ortholog is 100%.

Group of orthologs #1899. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5K7L3              	100.00%		H3GJK1              	100.00%
                    	       		H3HAA9              	38.02%
                    	       		H3GJK2              	37.92%
Bootstrap support for Q5K7L3 as seed ortholog is 100%.
Bootstrap support for H3GJK1 as seed ortholog is 100%.

Group of orthologs #1900. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:7 P.ramorum:57

Q5KK75              	100.00%		H3GBU4              	100.00%
                    	       		H3GUM8              	7.93%
                    	       		H3H4R0              	6.25%
Bootstrap support for Q5KK75 as seed ortholog is 57%.
Alternative seed ortholog is Q5KM72 (7 bits away from this cluster)
Bootstrap support for H3GBU4 as seed ortholog is 100%.

Group of orthologs #1901. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5K848              	100.00%		H3GBC5              	100.00%
Bootstrap support for Q5K848 as seed ortholog is 100%.
Bootstrap support for H3GBC5 as seed ortholog is 100%.

Group of orthologs #1902. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5KDU9              	100.00%		H3GCF5              	100.00%
Bootstrap support for Q5KDU9 as seed ortholog is 100%.
Bootstrap support for H3GCF5 as seed ortholog is 100%.

Group of orthologs #1903. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5K8W3              	100.00%		H3GH41              	100.00%
Bootstrap support for Q5K8W3 as seed ortholog is 100%.
Bootstrap support for H3GH41 as seed ortholog is 100%.

Group of orthologs #1904. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5KKV7              	100.00%		H3GI68              	100.00%
Bootstrap support for Q5KKV7 as seed ortholog is 100%.
Bootstrap support for H3GI68 as seed ortholog is 100%.

Group of orthologs #1905. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5KBQ0              	100.00%		H3H3B8              	100.00%
Bootstrap support for Q5KBQ0 as seed ortholog is 100%.
Bootstrap support for H3H3B8 as seed ortholog is 100%.

Group of orthologs #1906. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5K9W5              	100.00%		H3HDS1              	100.00%
Bootstrap support for Q5K9W5 as seed ortholog is 100%.
Bootstrap support for H3HDS1 as seed ortholog is 100%.

Group of orthologs #1907. Best score 57 bits
Score difference with first non-orthologous sequence - C.neoformans:57 P.ramorum:57

Q5KA90              	100.00%		H3HEF9              	100.00%
Bootstrap support for Q5KA90 as seed ortholog is 100%.
Bootstrap support for H3HEF9 as seed ortholog is 100%.

Group of orthologs #1908. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

Q5KJI9              	100.00%		H3GQT2              	100.00%
                    	       		H3GQT0              	79.44%
                    	       		H3GQS9              	70.00%
                    	       		H3GQT1              	64.22%
                    	       		H3GKJ6              	33.33%
Bootstrap support for Q5KJI9 as seed ortholog is 100%.
Bootstrap support for H3GQT2 as seed ortholog is 100%.

Group of orthologs #1909. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

Q5K6Z4              	100.00%		H3HA69              	100.00%
                    	       		H3H9T6              	89.00%
Bootstrap support for Q5K6Z4 as seed ortholog is 100%.
Bootstrap support for H3HA69 as seed ortholog is 100%.

Group of orthologs #1910. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

Q5KJG4              	100.00%		H3H3A9              	100.00%
                    	       		H3H3B0              	58.37%
Bootstrap support for Q5KJG4 as seed ortholog is 100%.
Bootstrap support for H3H3A9 as seed ortholog is 100%.

Group of orthologs #1911. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

P0CP80              	100.00%		H3GDM9              	100.00%
Bootstrap support for P0CP80 as seed ortholog is 100%.
Bootstrap support for H3GDM9 as seed ortholog is 100%.

Group of orthologs #1912. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

Q5K8M0              	100.00%		H3GT06              	100.00%
Bootstrap support for Q5K8M0 as seed ortholog is 100%.
Bootstrap support for H3GT06 as seed ortholog is 100%.

Group of orthologs #1913. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:56

Q5KDT6              	100.00%		H3GTA1              	100.00%
Bootstrap support for Q5KDT6 as seed ortholog is 100%.
Bootstrap support for H3GTA1 as seed ortholog is 100%.

Group of orthologs #1914. Best score 56 bits
Score difference with first non-orthologous sequence - C.neoformans:56 P.ramorum:8

Q5KPM9              	100.00%		H3GLQ5              	100.00%
Bootstrap support for Q5KPM9 as seed ortholog is 100%.
Bootstrap support for H3GLQ5 as seed ortholog is 59%.
Alternative seed ortholog is H3GS64 (8 bits away from this cluster)

Group of orthologs #1915. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:55

Q5KNW0              	100.00%		H3GY34              	100.00%
                    	       		H3GY37              	51.98%
                    	       		H3GY33              	42.66%
                    	       		H3HE13              	40.54%
                    	       		H3H0K7              	30.37%
                    	       		H3H4B4              	30.23%
Bootstrap support for Q5KNW0 as seed ortholog is 100%.
Bootstrap support for H3GY34 as seed ortholog is 100%.

Group of orthologs #1916. Best score 55 bits
Score difference with first non-orthologous sequence - C.neoformans:55 P.ramorum:55

P0CN54              	100.00%		H3GXI5              	100.00%
Bootstrap support for P0CN54 as seed ortholog is 100%.
Bootstrap support for H3GXI5 as seed ortholog is 100%.

Group of orthologs #1917. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KF03              	100.00%		H3GPS0              	100.00%
                    	       		H3GPS3              	70.23%
                    	       		H3H5Y9              	60.20%
                    	       		H3GPS1              	58.39%
                    	       		H3GPS2              	57.57%
                    	       		H3H5Y8              	56.41%
Bootstrap support for Q5KF03 as seed ortholog is 100%.
Bootstrap support for H3GPS0 as seed ortholog is 100%.

Group of orthologs #1918. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KCR0              	100.00%		H3GH39              	100.00%
                    	       		H3H988              	78.13%
Bootstrap support for Q5KCR0 as seed ortholog is 100%.
Bootstrap support for H3GH39 as seed ortholog is 100%.

Group of orthologs #1919. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:2

Q5KN92              	100.00%		H3H395              	100.00%
                    	       		H3GVE4              	10.38%
Bootstrap support for Q5KN92 as seed ortholog is 100%.
Bootstrap support for H3H395 as seed ortholog is 57%.
Alternative seed ortholog is H3GS64 (2 bits away from this cluster)

Group of orthologs #1920. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KGQ9              	100.00%		H3HAN1              	100.00%
                    	       		H3GVS9              	6.50%
Bootstrap support for Q5KGQ9 as seed ortholog is 100%.
Bootstrap support for H3HAN1 as seed ortholog is 100%.

Group of orthologs #1921. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KLY6              	100.00%		H3G990              	100.00%
Bootstrap support for Q5KLY6 as seed ortholog is 100%.
Bootstrap support for H3G990 as seed ortholog is 100%.

Group of orthologs #1922. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KFC6              	100.00%		H3GFL8              	100.00%
Bootstrap support for Q5KFC6 as seed ortholog is 100%.
Bootstrap support for H3GFL8 as seed ortholog is 100%.

Group of orthologs #1923. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KMU5              	100.00%		H3GLE8              	100.00%
Bootstrap support for Q5KMU5 as seed ortholog is 100%.
Bootstrap support for H3GLE8 as seed ortholog is 100%.

Group of orthologs #1924. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KP57              	100.00%		H3GVH9              	100.00%
Bootstrap support for Q5KP57 as seed ortholog is 100%.
Bootstrap support for H3GVH9 as seed ortholog is 100%.

Group of orthologs #1925. Best score 54 bits
Score difference with first non-orthologous sequence - C.neoformans:54 P.ramorum:54

Q5KGX3              	100.00%		H3HD07              	100.00%
Bootstrap support for Q5KGX3 as seed ortholog is 100%.
Bootstrap support for H3HD07 as seed ortholog is 100%.

Group of orthologs #1926. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:53

Q5KDZ6              	100.00%		H3G587              	100.00%
Bootstrap support for Q5KDZ6 as seed ortholog is 100%.
Bootstrap support for H3G587 as seed ortholog is 100%.

Group of orthologs #1927. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:53

P0CR32              	100.00%		H3GI70              	100.00%
Bootstrap support for P0CR32 as seed ortholog is 100%.
Bootstrap support for H3GI70 as seed ortholog is 100%.

Group of orthologs #1928. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:53

Q5KGA0              	100.00%		H3GIA3              	100.00%
Bootstrap support for Q5KGA0 as seed ortholog is 100%.
Bootstrap support for H3GIA3 as seed ortholog is 100%.

Group of orthologs #1929. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:53

Q5K7Y3              	100.00%		H3GT45              	100.00%
Bootstrap support for Q5K7Y3 as seed ortholog is 100%.
Bootstrap support for H3GT45 as seed ortholog is 100%.

Group of orthologs #1930. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:6 P.ramorum:53

Q5K8W8              	100.00%		H3H3P1              	100.00%
Bootstrap support for Q5K8W8 as seed ortholog is 60%.
Alternative seed ortholog is Q5KM72 (6 bits away from this cluster)
Bootstrap support for H3H3P1 as seed ortholog is 100%.

Group of orthologs #1931. Best score 53 bits
Score difference with first non-orthologous sequence - C.neoformans:53 P.ramorum:53

Q5KLW2              	100.00%		H3GT42              	100.00%
Bootstrap support for Q5KLW2 as seed ortholog is 100%.
Bootstrap support for H3GT42 as seed ortholog is 100%.

Group of orthologs #1932. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:1 P.ramorum:52

Q5KAZ1              	100.00%		H3GAB9              	100.00%
                    	       		H3GZH9              	49.88%
Bootstrap support for Q5KAZ1 as seed ortholog is 51%.
Alternative seed ortholog is Q5K7H9 (1 bits away from this cluster)
Bootstrap support for H3GAB9 as seed ortholog is 100%.

Group of orthologs #1933. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.ramorum:52

Q5KNR5              	100.00%		H3GMX3              	100.00%
Bootstrap support for Q5KNR5 as seed ortholog is 100%.
Bootstrap support for H3GMX3 as seed ortholog is 100%.

Group of orthologs #1934. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.ramorum:52

Q5KFI5              	100.00%		H3GVV6              	100.00%
Bootstrap support for Q5KFI5 as seed ortholog is 100%.
Bootstrap support for H3GVV6 as seed ortholog is 100%.

Group of orthologs #1935. Best score 52 bits
Score difference with first non-orthologous sequence - C.neoformans:52 P.ramorum:52

Q5K7J0              	100.00%		H3HBE7              	100.00%
Bootstrap support for Q5K7J0 as seed ortholog is 100%.
Bootstrap support for H3HBE7 as seed ortholog is 100%.

Group of orthologs #1936. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5KG48              	100.00%		H3GFN0              	100.00%
Q5KG56              	61.23%		H3GFM7              	57.94%
Q5KG57              	58.41%		
Q5KG55              	57.00%		
Q5K7S7              	26.83%		
Bootstrap support for Q5KG48 as seed ortholog is 100%.
Bootstrap support for H3GFN0 as seed ortholog is 100%.

Group of orthologs #1937. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5KHR5              	100.00%		H3GR37              	100.00%
                    	       		H3H736              	100.00%
Bootstrap support for Q5KHR5 as seed ortholog is 100%.
Bootstrap support for H3GR37 as seed ortholog is 100%.
Bootstrap support for H3H736 as seed ortholog is 100%.

Group of orthologs #1938. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5K6T8              	100.00%		H3GBH4              	100.00%
Bootstrap support for Q5K6T8 as seed ortholog is 100%.
Bootstrap support for H3GBH4 as seed ortholog is 100%.

Group of orthologs #1939. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5KD81              	100.00%		H3GKL5              	100.00%
Bootstrap support for Q5KD81 as seed ortholog is 100%.
Bootstrap support for H3GKL5 as seed ortholog is 100%.

Group of orthologs #1940. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

P0CP44              	100.00%		H3HC78              	100.00%
Bootstrap support for P0CP44 as seed ortholog is 100%.
Bootstrap support for H3HC78 as seed ortholog is 100%.

Group of orthologs #1941. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5KPE1              	100.00%		H3H021              	100.00%
Bootstrap support for Q5KPE1 as seed ortholog is 100%.
Bootstrap support for H3H021 as seed ortholog is 100%.

Group of orthologs #1942. Best score 51 bits
Score difference with first non-orthologous sequence - C.neoformans:51 P.ramorum:51

Q5KLP1              	100.00%		H3HB80              	100.00%
Bootstrap support for Q5KLP1 as seed ortholog is 100%.
Bootstrap support for H3HB80 as seed ortholog is 100%.

Group of orthologs #1943. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:50

Q5KHN2              	100.00%		H3GTF3              	100.00%
Q5KM91              	100.00%		
Bootstrap support for Q5KHN2 as seed ortholog is 100%.
Bootstrap support for Q5KM91 as seed ortholog is 100%.
Bootstrap support for H3GTF3 as seed ortholog is 100%.

Group of orthologs #1944. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:50

Q5KI25              	100.00%		H3GGG8              	100.00%
Bootstrap support for Q5KI25 as seed ortholog is 100%.
Bootstrap support for H3GGG8 as seed ortholog is 100%.

Group of orthologs #1945. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:50

Q5KCZ5              	100.00%		H3GRN6              	100.00%
Bootstrap support for Q5KCZ5 as seed ortholog is 100%.
Bootstrap support for H3GRN6 as seed ortholog is 100%.

Group of orthologs #1946. Best score 50 bits
Score difference with first non-orthologous sequence - C.neoformans:50 P.ramorum:50

Q5KIW2              	100.00%		H3H2R7              	100.00%
Bootstrap support for Q5KIW2 as seed ortholog is 100%.
Bootstrap support for H3H2R7 as seed ortholog is 100%.

Group of orthologs #1947. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KCB7              	100.00%		H3GC67              	100.00%
Q5KFA9              	9.51%		
Bootstrap support for Q5KCB7 as seed ortholog is 100%.
Bootstrap support for H3GC67 as seed ortholog is 100%.

Group of orthologs #1948. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KF00              	100.00%		H3GIM0              	100.00%
                    	       		H3HAE4              	75.70%
Bootstrap support for Q5KF00 as seed ortholog is 100%.
Bootstrap support for H3GIM0 as seed ortholog is 100%.

Group of orthologs #1949. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KNM1              	100.00%		H3GH35              	100.00%
                    	       		H3H5H0              	100.00%
Bootstrap support for Q5KNM1 as seed ortholog is 100%.
Bootstrap support for H3GH35 as seed ortholog is 100%.
Bootstrap support for H3H5H0 as seed ortholog is 100%.

Group of orthologs #1950. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KNL0              	100.00%		H3GJ69              	100.00%
Q5K878              	48.94%		
Bootstrap support for Q5KNL0 as seed ortholog is 100%.
Bootstrap support for H3GJ69 as seed ortholog is 100%.

Group of orthologs #1951. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KEH2              	100.00%		H3GZU3              	100.00%
                    	       		H3GZV0              	26.70%
Bootstrap support for Q5KEH2 as seed ortholog is 100%.
Bootstrap support for H3GZU3 as seed ortholog is 100%.

Group of orthologs #1952. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KFM3              	100.00%		H3GAD1              	100.00%
Bootstrap support for Q5KFM3 as seed ortholog is 100%.
Bootstrap support for H3GAD1 as seed ortholog is 100%.

Group of orthologs #1953. Best score 49 bits
Score difference with first non-orthologous sequence - C.neoformans:49 P.ramorum:49

Q5KJ70              	100.00%		H3GGS2              	100.00%
Bootstrap support for Q5KJ70 as seed ortholog is 100%.
Bootstrap support for H3GGS2 as seed ortholog is 100%.

Group of orthologs #1954. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:48

Q5K7G1              	100.00%		H3GLD0              	100.00%
Q5K7H2              	57.70%		
Bootstrap support for Q5K7G1 as seed ortholog is 100%.
Bootstrap support for H3GLD0 as seed ortholog is 100%.

Group of orthologs #1955. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:48

Q5KPF6              	100.00%		H3GLC5              	100.00%
Bootstrap support for Q5KPF6 as seed ortholog is 100%.
Bootstrap support for H3GLC5 as seed ortholog is 100%.

Group of orthologs #1956. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:48

Q5KMY1              	100.00%		H3GZB6              	100.00%
Bootstrap support for Q5KMY1 as seed ortholog is 100%.
Bootstrap support for H3GZB6 as seed ortholog is 100%.

Group of orthologs #1957. Best score 48 bits
Score difference with first non-orthologous sequence - C.neoformans:48 P.ramorum:48

Q5KMK2              	100.00%		H3HEE2              	100.00%
Bootstrap support for Q5KMK2 as seed ortholog is 100%.
Bootstrap support for H3HEE2 as seed ortholog is 100%.

Group of orthologs #1958. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:47

P0CR88              	100.00%		H3H2B6              	100.00%
                    	       		H3GGN2              	93.95%
Bootstrap support for P0CR88 as seed ortholog is 100%.
Bootstrap support for H3H2B6 as seed ortholog is 100%.

Group of orthologs #1959. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:47

P0CR98              	100.00%		H3GD79              	100.00%
Bootstrap support for P0CR98 as seed ortholog is 100%.
Bootstrap support for H3GD79 as seed ortholog is 100%.

Group of orthologs #1960. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:47

P0CR94              	100.00%		H3GGJ3              	100.00%
Bootstrap support for P0CR94 as seed ortholog is 100%.
Bootstrap support for H3GGJ3 as seed ortholog is 100%.

Group of orthologs #1961. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:47

Q5KM45              	100.00%		H3H303              	100.00%
Bootstrap support for Q5KM45 as seed ortholog is 100%.
Bootstrap support for H3H303 as seed ortholog is 100%.

Group of orthologs #1962. Best score 47 bits
Score difference with first non-orthologous sequence - C.neoformans:47 P.ramorum:47

Q5KK92              	100.00%		H3HB04              	100.00%
Bootstrap support for Q5KK92 as seed ortholog is 100%.
Bootstrap support for H3HB04 as seed ortholog is 100%.

Group of orthologs #1963. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.ramorum:45

Q5KIM9              	100.00%		H3H2C3              	100.00%
Bootstrap support for Q5KIM9 as seed ortholog is 100%.
Bootstrap support for H3H2C3 as seed ortholog is 100%.

Group of orthologs #1964. Best score 45 bits
Score difference with first non-orthologous sequence - C.neoformans:45 P.ramorum:45

Q5KH95              	100.00%		H3HCX3              	100.00%
Bootstrap support for Q5KH95 as seed ortholog is 100%.
Bootstrap support for H3HCX3 as seed ortholog is 100%.

Group of orthologs #1965. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.ramorum:44

Q5KNY2              	100.00%		H3H7B9              	100.00%
                    	       		H3HAD4              	97.19%
                    	       		H3H998              	97.19%
                    	       		H3H8U0              	97.03%
                    	       		H3H996              	96.70%
                    	       		H3HA20              	96.70%
                    	       		H3H8P5              	96.37%
                    	       		H3H5I8              	95.87%
                    	       		H3H9H0              	95.38%
                    	       		H3H915              	95.05%
                    	       		H3H9Z9              	91.09%
                    	       		H3H9I7              	86.47%
                    	       		H3H9D2              	85.31%
                    	       		H3H4N9              	72.77%
                    	       		H3H8D0              	71.78%
                    	       		H3H7L8              	67.99%
                    	       		H3H912              	67.16%
                    	       		H3H795              	66.17%
                    	       		H3H4S4              	65.84%
                    	       		H3H958              	63.37%
                    	       		H3H994              	58.91%
                    	       		H3H9L9              	58.25%
                    	       		H3H9R0              	58.09%
                    	       		H3H9D4              	51.32%
                    	       		H3H2R8              	50.33%
                    	       		H3H9G6              	9.57%
                    	       		H3H7C1              	8.25%
                    	       		H3H5K9              	7.92%
                    	       		H3GEE3              	7.92%
                    	       		H3H6Z0              	7.59%
                    	       		H3H9W4              	7.26%
Bootstrap support for Q5KNY2 as seed ortholog is 100%.
Bootstrap support for H3H7B9 as seed ortholog is 100%.

Group of orthologs #1966. Best score 44 bits
Score difference with first non-orthologous sequence - C.neoformans:44 P.ramorum:44

Q5KJ13              	100.00%		H3GXH8              	100.00%
                    	       		H3GPS4              	52.81%
Bootstrap support for Q5KJ13 as seed ortholog is 100%.
Bootstrap support for H3GXH8 as seed ortholog is 100%.

Group of orthologs #1967. Best score 43 bits
Score difference with first non-orthologous sequence - C.neoformans:43 P.ramorum:43

Q5KEF0              	100.00%		H3GGH6              	100.00%
Bootstrap support for Q5KEF0 as seed ortholog is 100%.
Bootstrap support for H3GGH6 as seed ortholog is 100%.

Group of orthologs #1968. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.ramorum:42

Q5KI82              	100.00%		H3G824              	100.00%
                    	       		H3GAG6              	69.89%
                    	       		H3H2J3              	12.87%
Bootstrap support for Q5KI82 as seed ortholog is 100%.
Bootstrap support for H3G824 as seed ortholog is 100%.

Group of orthologs #1969. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.ramorum:42

Q5KKK4              	100.00%		H3H103              	100.00%
Q5KP22              	6.13%		
Bootstrap support for Q5KKK4 as seed ortholog is 100%.
Bootstrap support for H3H103 as seed ortholog is 100%.

Group of orthologs #1970. Best score 42 bits
Score difference with first non-orthologous sequence - C.neoformans:42 P.ramorum:42

Q5KFV7              	100.00%		H3GED9              	100.00%
Bootstrap support for Q5KFV7 as seed ortholog is 100%.
Bootstrap support for H3GED9 as seed ortholog is 100%.

Group of orthologs #1971. Best score 41 bits
Score difference with first non-orthologous sequence - C.neoformans:41 P.ramorum:41

Q5KLT7              	100.00%		H3GY99              	100.00%
Q5KMC6              	67.71%		H3GYA0              	99.02%
                    	       		H3GF87              	85.27%
                    	       		H3GY95              	73.67%
                    	       		H3H3U9              	46.56%
Bootstrap support for Q5KLT7 as seed ortholog is 100%.
Bootstrap support for H3GY99 as seed ortholog is 100%.

Group of orthologs #1972. Best score 40 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:40

Q5KQ08              	100.00%		H3GWE4              	100.00%
                    	       		H3GFS4              	59.74%
                    	       		H3GFS5              	57.27%
                    	       		H3GFS6              	57.12%
                    	       		H3GRY6              	57.12%
                    	       		H3GXR9              	53.63%
                    	       		H3GN42              	40.55%
                    	       		H3GHW3              	39.39%
                    	       		H3H463              	31.54%
                    	       		H3H464              	30.67%
                    	       		H3GF99              	26.89%
                    	       		H3H465              	24.42%
Bootstrap support for Q5KQ08 as seed ortholog is 100%.
Bootstrap support for H3GWE4 as seed ortholog is 100%.

Group of orthologs #1973. Best score 40 bits
Score difference with first non-orthologous sequence - C.neoformans:40 P.ramorum:40

Q5KK54              	100.00%		H3GHP1              	100.00%
Q5K6U4              	8.23%		H3GUX6              	8.98%
Bootstrap support for Q5KK54 as seed ortholog is 100%.
Bootstrap support for H3GHP1 as seed ortholog is 100%.