###################################
144 groups of orthologs
148 in-paralogs from C.trachomatis
168 in-paralogs from P.jiroveci
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 735 bits
Score difference with first non-orthologous sequence - C.trachomatis:735 P.jiroveci:735

O84250              	100.00%		L0PAQ3              	100.00%
Bootstrap support for O84250 as seed ortholog is 100%.
Bootstrap support for L0PAQ3 as seed ortholog is 100%.

Group of orthologs #2. Best score 694 bits
Score difference with first non-orthologous sequence - C.trachomatis:694 P.jiroveci:157

P17821              	100.00%		L0PFS2              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for L0PFS2 as seed ortholog is 99%.

Group of orthologs #3. Best score 651 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 P.jiroveci:651

O84115              	100.00%		L0P9C7              	100.00%
Bootstrap support for O84115 as seed ortholog is 99%.
Bootstrap support for L0P9C7 as seed ortholog is 100%.

Group of orthologs #4. Best score 602 bits
Score difference with first non-orthologous sequence - C.trachomatis:602 P.jiroveci:349

O84022              	100.00%		L0PBQ6              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for L0PBQ6 as seed ortholog is 100%.

Group of orthologs #5. Best score 592 bits
Score difference with first non-orthologous sequence - C.trachomatis:592 P.jiroveci:592

O84348              	100.00%		L0PEK9              	100.00%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for L0PEK9 as seed ortholog is 100%.

Group of orthologs #6. Best score 539 bits
Score difference with first non-orthologous sequence - C.trachomatis:362 P.jiroveci:468

P0C0Z7              	100.00%		L0PDM6              	100.00%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for L0PDM6 as seed ortholog is 100%.

Group of orthologs #7. Best score 534 bits
Score difference with first non-orthologous sequence - C.trachomatis:534 P.jiroveci:534

O84057              	100.00%		L0PGR4              	100.00%
                    	       		L0PFQ2              	93.87%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for L0PGR4 as seed ortholog is 100%.

Group of orthologs #8. Best score 512 bits
Score difference with first non-orthologous sequence - C.trachomatis:512 P.jiroveci:192

O84444              	100.00%		L0PBP8              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for L0PBP8 as seed ortholog is 99%.

Group of orthologs #9. Best score 491 bits
Score difference with first non-orthologous sequence - C.trachomatis:491 P.jiroveci:343

P0CD71              	100.00%		L0P9G2              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for L0P9G2 as seed ortholog is 100%.

Group of orthologs #10. Best score 488 bits
Score difference with first non-orthologous sequence - C.trachomatis:488 P.jiroveci:347

O84304              	100.00%		L0PDB3              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for L0PDB3 as seed ortholog is 100%.

Group of orthologs #11. Best score 482 bits
Score difference with first non-orthologous sequence - C.trachomatis:482 P.jiroveci:482

O84834              	100.00%		L0PBY6              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for L0PBY6 as seed ortholog is 100%.

Group of orthologs #12. Best score 466 bits
Score difference with first non-orthologous sequence - C.trachomatis:466 P.jiroveci:466

O84754              	100.00%		L0PDQ4              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for L0PDQ4 as seed ortholog is 100%.

Group of orthologs #13. Best score 455 bits
Score difference with first non-orthologous sequence - C.trachomatis:455 P.jiroveci:455

O84066              	100.00%		L0PHB7              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for L0PHB7 as seed ortholog is 100%.

Group of orthologs #14. Best score 446 bits
Score difference with first non-orthologous sequence - C.trachomatis:446 P.jiroveci:446

P0CD73              	100.00%		L0PCP1              	100.00%
Bootstrap support for P0CD73 as seed ortholog is 100%.
Bootstrap support for L0PCP1 as seed ortholog is 100%.

Group of orthologs #15. Best score 439 bits
Score difference with first non-orthologous sequence - C.trachomatis:439 P.jiroveci:439

O84067              	100.00%		L0PBG8              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for L0PBG8 as seed ortholog is 100%.

Group of orthologs #16. Best score 438 bits
Score difference with first non-orthologous sequence - C.trachomatis:438 P.jiroveci:438

O84755              	100.00%		L0PF66              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for L0PF66 as seed ortholog is 100%.

Group of orthologs #17. Best score 405 bits
Score difference with first non-orthologous sequence - C.trachomatis:405 P.jiroveci:405

O84863              	100.00%		L0PES7              	100.00%
Bootstrap support for O84863 as seed ortholog is 100%.
Bootstrap support for L0PES7 as seed ortholog is 100%.

Group of orthologs #18. Best score 375 bits
Score difference with first non-orthologous sequence - C.trachomatis:375 P.jiroveci:375

Q59321              	100.00%		L0PC65              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for L0PC65 as seed ortholog is 100%.

Group of orthologs #19. Best score 368 bits
Score difference with first non-orthologous sequence - C.trachomatis:368 P.jiroveci:283

O84211              	100.00%		L0PBN1              	100.00%
Bootstrap support for O84211 as seed ortholog is 100%.
Bootstrap support for L0PBN1 as seed ortholog is 100%.

Group of orthologs #20. Best score 344 bits
Score difference with first non-orthologous sequence - C.trachomatis:296 P.jiroveci:247

O84831              	100.00%		L0PA93              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for L0PA93 as seed ortholog is 99%.

Group of orthologs #21. Best score 342 bits
Score difference with first non-orthologous sequence - C.trachomatis:342 P.jiroveci:342

O84310              	100.00%		L0PH89              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for L0PH89 as seed ortholog is 100%.

Group of orthologs #22. Best score 324 bits
Score difference with first non-orthologous sequence - C.trachomatis:324 P.jiroveci:324

O84561              	100.00%		L0P7Y5              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for L0P7Y5 as seed ortholog is 100%.

Group of orthologs #23. Best score 317 bits
Score difference with first non-orthologous sequence - C.trachomatis:317 P.jiroveci:179

O84546              	100.00%		L0P8W4              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for L0P8W4 as seed ortholog is 99%.

Group of orthologs #24. Best score 305 bits
Score difference with first non-orthologous sequence - C.trachomatis:305 P.jiroveci:305

O84823              	100.00%		L0PAS8              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for L0PAS8 as seed ortholog is 100%.

Group of orthologs #25. Best score 304 bits
Score difference with first non-orthologous sequence - C.trachomatis:304 P.jiroveci:304

O84451              	100.00%		L0PDV1              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for L0PDV1 as seed ortholog is 100%.

Group of orthologs #26. Best score 302 bits
Score difference with first non-orthologous sequence - C.trachomatis:302 P.jiroveci:302

P0CE09              	100.00%		L0PG77              	100.00%
                    	       		L0P9P7              	6.49%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for L0PG77 as seed ortholog is 100%.

Group of orthologs #27. Best score 301 bits
Score difference with first non-orthologous sequence - C.trachomatis:301 P.jiroveci:301

O84829              	100.00%		L0PGA8              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for L0PGA8 as seed ortholog is 100%.

Group of orthologs #28. Best score 296 bits
Score difference with first non-orthologous sequence - C.trachomatis:296 P.jiroveci:97

O84797              	100.00%		L0PIP5              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for L0PIP5 as seed ortholog is 96%.

Group of orthologs #29. Best score 294 bits
Score difference with first non-orthologous sequence - C.trachomatis:294 P.jiroveci:294

O84775              	100.00%		L0PEX5              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for L0PEX5 as seed ortholog is 100%.

Group of orthologs #30. Best score 291 bits
Score difference with first non-orthologous sequence - C.trachomatis:291 P.jiroveci:291

O84316              	100.00%		L0PB43              	100.00%
                    	       		L0PB90              	18.99%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for L0PB43 as seed ortholog is 100%.

Group of orthologs #31. Best score 284 bits
Score difference with first non-orthologous sequence - C.trachomatis:284 P.jiroveci:201

O84786              	100.00%		L0PFG7              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for L0PFG7 as seed ortholog is 100%.

Group of orthologs #32. Best score 270 bits
Score difference with first non-orthologous sequence - C.trachomatis:270 P.jiroveci:270

O84248              	100.00%		L0PDT0              	100.00%
Bootstrap support for O84248 as seed ortholog is 100%.
Bootstrap support for L0PDT0 as seed ortholog is 100%.

Group of orthologs #33. Best score 264 bits
Score difference with first non-orthologous sequence - C.trachomatis:264 P.jiroveci:264

O84585              	100.00%		L0PB60              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for L0PB60 as seed ortholog is 100%.

Group of orthologs #34. Best score 263 bits
Score difference with first non-orthologous sequence - C.trachomatis:263 P.jiroveci:263

P0CE21              	100.00%		L0PEE3              	100.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for L0PEE3 as seed ortholog is 100%.

Group of orthologs #35. Best score 253 bits
Score difference with first non-orthologous sequence - C.trachomatis:253 P.jiroveci:253

O84188              	100.00%		L0PG48              	100.00%
Bootstrap support for O84188 as seed ortholog is 100%.
Bootstrap support for L0PG48 as seed ortholog is 100%.

Group of orthologs #36. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 P.jiroveci:245

O84249              	100.00%		L0PCP3              	100.00%
Bootstrap support for O84249 as seed ortholog is 96%.
Bootstrap support for L0PCP3 as seed ortholog is 100%.

Group of orthologs #37. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 P.jiroveci:244

O84439              	100.00%		L0PCX1              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for L0PCX1 as seed ortholog is 100%.

Group of orthologs #38. Best score 241 bits
Score difference with first non-orthologous sequence - C.trachomatis:241 P.jiroveci:241

O84315              	100.00%		L0PEZ2              	100.00%
                    	       		L0PH30              	88.35%
Bootstrap support for O84315 as seed ortholog is 100%.
Bootstrap support for L0PEZ2 as seed ortholog is 100%.

Group of orthologs #39. Best score 241 bits
Score difference with first non-orthologous sequence - C.trachomatis:241 P.jiroveci:241

P0CD72              	100.00%		L0P8P8              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for L0P8P8 as seed ortholog is 100%.

Group of orthologs #40. Best score 238 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 P.jiroveci:238

O84058              	100.00%		L0PC17              	100.00%
                    	       		L0PD22              	60.00%
Bootstrap support for O84058 as seed ortholog is 97%.
Bootstrap support for L0PC17 as seed ortholog is 100%.

Group of orthologs #41. Best score 235 bits
Score difference with first non-orthologous sequence - C.trachomatis:235 P.jiroveci:235

O84787              	100.00%		L0PC44              	100.00%
Bootstrap support for O84787 as seed ortholog is 100%.
Bootstrap support for L0PC44 as seed ortholog is 100%.

Group of orthologs #42. Best score 233 bits
Score difference with first non-orthologous sequence - C.trachomatis:233 P.jiroveci:233

O84373              	100.00%		L0PHL5              	100.00%
Bootstrap support for O84373 as seed ortholog is 100%.
Bootstrap support for L0PHL5 as seed ortholog is 100%.

Group of orthologs #43. Best score 216 bits
Score difference with first non-orthologous sequence - C.trachomatis:216 P.jiroveci:216

O84642              	100.00%		L0PF21              	100.00%
                    	       		L0P6T3              	21.27%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for L0PF21 as seed ortholog is 100%.

Group of orthologs #44. Best score 216 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 P.jiroveci:216

O84026              	100.00%		L0PGW6              	100.00%
Bootstrap support for O84026 as seed ortholog is 99%.
Bootstrap support for L0PGW6 as seed ortholog is 100%.

Group of orthologs #45. Best score 210 bits
Score difference with first non-orthologous sequence - C.trachomatis:210 P.jiroveci:210

O84081              	100.00%		L0P7B5              	100.00%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for L0P7B5 as seed ortholog is 100%.

Group of orthologs #46. Best score 206 bits
Score difference with first non-orthologous sequence - C.trachomatis:206 P.jiroveci:206

O84196              	100.00%		L0P7Z6              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for L0P7Z6 as seed ortholog is 100%.

Group of orthologs #47. Best score 206 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 P.jiroveci:206

O84614              	100.00%		L0P9P8              	100.00%
Bootstrap support for O84614 as seed ortholog is 99%.
Bootstrap support for L0P9P8 as seed ortholog is 100%.

Group of orthologs #48. Best score 206 bits
Score difference with first non-orthologous sequence - C.trachomatis:206 P.jiroveci:15

O84345              	100.00%		L0PG51              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for L0PG51 as seed ortholog is 68%.
Alternative seed ortholog is L0PGJ9 (15 bits away from this cluster)

Group of orthologs #49. Best score 203 bits
Score difference with first non-orthologous sequence - C.trachomatis:203 P.jiroveci:203

O84007              	100.00%		L0PGV2              	100.00%
                    	       		L0PG40              	63.81%
Bootstrap support for O84007 as seed ortholog is 100%.
Bootstrap support for L0PGV2 as seed ortholog is 100%.

Group of orthologs #50. Best score 200 bits
Score difference with first non-orthologous sequence - C.trachomatis:200 P.jiroveci:13

O84734              	100.00%		L0P9N8              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for L0P9N8 as seed ortholog is 63%.
Alternative seed ortholog is L0PAU1 (13 bits away from this cluster)

Group of orthologs #51. Best score 188 bits
Score difference with first non-orthologous sequence - C.trachomatis:188 P.jiroveci:188

P36431              	100.00%		L0PBY9              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for L0PBY9 as seed ortholog is 100%.

Group of orthologs #52. Best score 186 bits
Score difference with first non-orthologous sequence - C.trachomatis:186 P.jiroveci:186

O84289              	100.00%		L0PD52              	100.00%
                    	       		L0PDL8              	90.68%
Bootstrap support for O84289 as seed ortholog is 100%.
Bootstrap support for L0PD52 as seed ortholog is 100%.

Group of orthologs #53. Best score 184 bits
Score difference with first non-orthologous sequence - C.trachomatis:184 P.jiroveci:78

O84352              	100.00%		L0P6U6              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for L0P6U6 as seed ortholog is 93%.

Group of orthologs #54. Best score 184 bits
Score difference with first non-orthologous sequence - C.trachomatis:184 P.jiroveci:184

O84613              	100.00%		L0PDH2              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for L0PDH2 as seed ortholog is 100%.

Group of orthologs #55. Best score 179 bits
Score difference with first non-orthologous sequence - C.trachomatis:179 P.jiroveci:179

O84028              	100.00%		L0PFN9              	100.00%
                    	       		L0PEF0              	34.84%
Bootstrap support for O84028 as seed ortholog is 100%.
Bootstrap support for L0PFN9 as seed ortholog is 100%.

Group of orthologs #56. Best score 177 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 P.jiroveci:177

O84266              	100.00%		L0PBI4              	100.00%
                    	       		L0P9A8              	22.82%
                    	       		L0PHB9              	22.82%
Bootstrap support for O84266 as seed ortholog is 99%.
Bootstrap support for L0PBI4 as seed ortholog is 100%.

Group of orthologs #57. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 P.jiroveci:66

O84732              	100.00%		L0PGH3              	100.00%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for L0PGH3 as seed ortholog is 90%.

Group of orthologs #58. Best score 172 bits
Score difference with first non-orthologous sequence - C.trachomatis:172 P.jiroveci:172

O84460              	100.00%		L0PCW8              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for L0PCW8 as seed ortholog is 100%.

Group of orthologs #59. Best score 170 bits
Score difference with first non-orthologous sequence - C.trachomatis:170 P.jiroveci:170

O84704              	100.00%		L0PG43              	100.00%
Bootstrap support for O84704 as seed ortholog is 100%.
Bootstrap support for L0PG43 as seed ortholog is 100%.

Group of orthologs #60. Best score 168 bits
Score difference with first non-orthologous sequence - C.trachomatis:168 P.jiroveci:35

O84035              	100.00%		L0PET5              	100.00%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for L0PET5 as seed ortholog is 78%.

Group of orthologs #61. Best score 167 bits
Score difference with first non-orthologous sequence - C.trachomatis:167 P.jiroveci:167

O84638              	100.00%		L0PEY2              	100.00%
Bootstrap support for O84638 as seed ortholog is 100%.
Bootstrap support for L0PEY2 as seed ortholog is 100%.

Group of orthologs #62. Best score 166 bits
Score difference with first non-orthologous sequence - C.trachomatis:166 P.jiroveci:166

O84332              	100.00%		L0PF73              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for L0PF73 as seed ortholog is 100%.

Group of orthologs #63. Best score 162 bits
Score difference with first non-orthologous sequence - C.trachomatis:162 P.jiroveci:162

O84619              	100.00%		L0P7Z1              	100.00%
Bootstrap support for O84619 as seed ortholog is 100%.
Bootstrap support for L0P7Z1 as seed ortholog is 100%.

Group of orthologs #64. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 P.jiroveci:154

O84579              	100.00%		L0PG96              	100.00%
Bootstrap support for O84579 as seed ortholog is 100%.
Bootstrap support for L0PG96 as seed ortholog is 100%.

Group of orthologs #65. Best score 147 bits
Score difference with first non-orthologous sequence - C.trachomatis:147 P.jiroveci:93

O84296              	100.00%		L0PD77              	100.00%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for L0PD77 as seed ortholog is 99%.

Group of orthologs #66. Best score 144 bits
Score difference with first non-orthologous sequence - C.trachomatis:144 P.jiroveci:58

O84530              	100.00%		L0PEA3              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for L0PEA3 as seed ortholog is 94%.

Group of orthologs #67. Best score 143 bits
Score difference with first non-orthologous sequence - C.trachomatis:143 P.jiroveci:143

O84006              	100.00%		L0PEA1              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for L0PEA1 as seed ortholog is 100%.

Group of orthologs #68. Best score 142 bits
Score difference with first non-orthologous sequence - C.trachomatis:142 P.jiroveci:37

O84676              	100.00%		L0P833              	100.00%
O84722              	15.05%		L0P765              	53.81%
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for L0P833 as seed ortholog is 86%.

Group of orthologs #69. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 P.jiroveci:71

P38004              	100.00%		L0P903              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for L0P903 as seed ortholog is 99%.

Group of orthologs #70. Best score 137 bits
Score difference with first non-orthologous sequence - C.trachomatis:137 P.jiroveci:137

O84309              	100.00%		L0P7M4              	100.00%
                    	       		L0PH62              	76.50%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for L0P7M4 as seed ortholog is 100%.

Group of orthologs #71. Best score 137 bits
Score difference with first non-orthologous sequence - C.trachomatis:24 P.jiroveci:137

O84712              	100.00%		L0PC06              	100.00%
Bootstrap support for O84712 as seed ortholog is 78%.
Bootstrap support for L0PC06 as seed ortholog is 100%.

Group of orthologs #72. Best score 134 bits
Score difference with first non-orthologous sequence - C.trachomatis:134 P.jiroveci:134

O84123              	100.00%		L0PBE8              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for L0PBE8 as seed ortholog is 100%.

Group of orthologs #73. Best score 134 bits
Score difference with first non-orthologous sequence - C.trachomatis:134 P.jiroveci:134

O84456              	100.00%		L0PFS1              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for L0PFS1 as seed ortholog is 100%.

Group of orthologs #74. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 P.jiroveci:133

O84096              	100.00%		L0PFI7              	100.00%
Bootstrap support for O84096 as seed ortholog is 100%.
Bootstrap support for L0PFI7 as seed ortholog is 100%.

Group of orthologs #75. Best score 130 bits
Score difference with first non-orthologous sequence - C.trachomatis:130 P.jiroveci:130

O84589              	100.00%		L0PAG8              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for L0PAG8 as seed ortholog is 100%.

Group of orthologs #76. Best score 129 bits
Score difference with first non-orthologous sequence - C.trachomatis:129 P.jiroveci:129

O84533              	100.00%		L0PEZ4              	100.00%
Bootstrap support for O84533 as seed ortholog is 100%.
Bootstrap support for L0PEZ4 as seed ortholog is 100%.

Group of orthologs #77. Best score 125 bits
Score difference with first non-orthologous sequence - C.trachomatis:125 P.jiroveci:125

O84687              	100.00%		L0PFQ6              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for L0PFQ6 as seed ortholog is 100%.

Group of orthologs #78. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:27 P.jiroveci:123

O84260              	100.00%		L0P6Y2              	100.00%
Bootstrap support for O84260 as seed ortholog is 45%.
Alternative seed ortholog is O84693 (27 bits away from this cluster)
Bootstrap support for L0P6Y2 as seed ortholog is 100%.

Group of orthologs #79. Best score 123 bits
Score difference with first non-orthologous sequence - C.trachomatis:123 P.jiroveci:123

O84649              	100.00%		L0P8R6              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for L0P8R6 as seed ortholog is 100%.

Group of orthologs #80. Best score 122 bits
Score difference with first non-orthologous sequence - C.trachomatis:122 P.jiroveci:27

O84843              	100.00%		L0P7R5              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for L0P7R5 as seed ortholog is 74%.
Alternative seed ortholog is L0PER3 (27 bits away from this cluster)

Group of orthologs #81. Best score 117 bits
Score difference with first non-orthologous sequence - C.trachomatis:117 P.jiroveci:49

O84130              	100.00%		L0PEX1              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for L0PEX1 as seed ortholog is 92%.

Group of orthologs #82. Best score 115 bits
Score difference with first non-orthologous sequence - C.trachomatis:115 P.jiroveci:115

O84094              	100.00%		L0P9P0              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for L0P9P0 as seed ortholog is 100%.

Group of orthologs #83. Best score 113 bits
Score difference with first non-orthologous sequence - C.trachomatis:113 P.jiroveci:62

P66370              	100.00%		L0P8A1              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for L0P8A1 as seed ortholog is 99%.

Group of orthologs #84. Best score 109 bits
Score difference with first non-orthologous sequence - C.trachomatis:109 P.jiroveci:109

P0CD79              	100.00%		L0PAD9              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for L0PAD9 as seed ortholog is 100%.

Group of orthologs #85. Best score 108 bits
Score difference with first non-orthologous sequence - C.trachomatis:108 P.jiroveci:108

O84630              	100.00%		L0P9I6              	100.00%
Bootstrap support for O84630 as seed ortholog is 100%.
Bootstrap support for L0P9I6 as seed ortholog is 100%.

Group of orthologs #86. Best score 103 bits
Score difference with first non-orthologous sequence - C.trachomatis:103 P.jiroveci:103

O84321              	100.00%		L0PCZ5              	100.00%
Bootstrap support for O84321 as seed ortholog is 100%.
Bootstrap support for L0PCZ5 as seed ortholog is 100%.

Group of orthologs #87. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 P.jiroveci:98

O84492              	100.00%		L0PCI3              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for L0PCI3 as seed ortholog is 100%.

Group of orthologs #88. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 P.jiroveci:98

O84752              	100.00%		L0PHG9              	100.00%
Bootstrap support for O84752 as seed ortholog is 100%.
Bootstrap support for L0PHG9 as seed ortholog is 100%.

Group of orthologs #89. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 P.jiroveci:96

O84301              	100.00%		L0P9Y7              	100.00%
Bootstrap support for O84301 as seed ortholog is 100%.
Bootstrap support for L0P9Y7 as seed ortholog is 100%.

Group of orthologs #90. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 P.jiroveci:95

O84859              	100.00%		L0P957              	100.00%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for L0P957 as seed ortholog is 100%.

Group of orthologs #91. Best score 95 bits
Score difference with first non-orthologous sequence - C.trachomatis:95 P.jiroveci:95

O84750              	100.00%		L0PEL2              	100.00%
Bootstrap support for O84750 as seed ortholog is 100%.
Bootstrap support for L0PEL2 as seed ortholog is 100%.

Group of orthologs #92. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 P.jiroveci:93

O84189              	100.00%		L0PAW7              	100.00%
Bootstrap support for O84189 as seed ortholog is 100%.
Bootstrap support for L0PAW7 as seed ortholog is 100%.

Group of orthologs #93. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 P.jiroveci:91

O84358              	100.00%		L0P8G8              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for L0P8G8 as seed ortholog is 100%.

Group of orthologs #94. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 P.jiroveci:91

O84478              	100.00%		L0PFF4              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for L0PFF4 as seed ortholog is 100%.

Group of orthologs #95. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 P.jiroveci:90

O84442              	100.00%		L0P9R8              	100.00%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for L0P9R8 as seed ortholog is 100%.

Group of orthologs #96. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 P.jiroveci:90

O84599              	100.00%		L0PFQ3              	100.00%
Bootstrap support for O84599 as seed ortholog is 100%.
Bootstrap support for L0PFQ3 as seed ortholog is 100%.

Group of orthologs #97. Best score 89 bits
Score difference with first non-orthologous sequence - C.trachomatis:89 P.jiroveci:36

O84595              	100.00%		L0PD02              	100.00%
Bootstrap support for O84595 as seed ortholog is 100%.
Bootstrap support for L0PD02 as seed ortholog is 92%.

Group of orthologs #98. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 P.jiroveci:2

O84650              	100.00%		L0P9U8              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for L0P9U8 as seed ortholog is 49%.
Alternative seed ortholog is L0PCV1 (2 bits away from this cluster)

Group of orthologs #99. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 P.jiroveci:87

P0CD88              	100.00%		L0PBK3              	100.00%
Bootstrap support for P0CD88 as seed ortholog is 100%.
Bootstrap support for L0PBK3 as seed ortholog is 100%.

Group of orthologs #100. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 P.jiroveci:26

P0CE04              	100.00%		L0PBR8              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for L0PBR8 as seed ortholog is 89%.

Group of orthologs #101. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 P.jiroveci:87

O84847              	100.00%		L0PDK5              	100.00%
Bootstrap support for O84847 as seed ortholog is 100%.
Bootstrap support for L0PDK5 as seed ortholog is 100%.

Group of orthologs #102. Best score 87 bits
Score difference with first non-orthologous sequence - C.trachomatis:87 P.jiroveci:87

O84215              	100.00%		L0PFR9              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for L0PFR9 as seed ortholog is 100%.

Group of orthologs #103. Best score 86 bits
Score difference with first non-orthologous sequence - C.trachomatis:86 P.jiroveci:86

O84851              	100.00%		L0PDX2              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for L0PDX2 as seed ortholog is 100%.

Group of orthologs #104. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 P.jiroveci:84

O84822              	100.00%		L0P9C9              	100.00%
Bootstrap support for O84822 as seed ortholog is 100%.
Bootstrap support for L0P9C9 as seed ortholog is 100%.

Group of orthologs #105. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 P.jiroveci:80

P0CD84              	100.00%		L0P724              	100.00%
Bootstrap support for P0CD84 as seed ortholog is 100%.
Bootstrap support for L0P724 as seed ortholog is 100%.

Group of orthologs #106. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 P.jiroveci:80

O84737              	100.00%		L0PBL4              	100.00%
Bootstrap support for O84737 as seed ortholog is 100%.
Bootstrap support for L0PBL4 as seed ortholog is 100%.

Group of orthologs #107. Best score 79 bits
Score difference with first non-orthologous sequence - C.trachomatis:79 P.jiroveci:79

O84469              	100.00%		L0P949              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for L0P949 as seed ortholog is 100%.

Group of orthologs #108. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 P.jiroveci:78

P0CD82              	100.00%		L0P8T2              	100.00%
                    	       		L0PA19              	82.93%
Bootstrap support for P0CD82 as seed ortholog is 100%.
Bootstrap support for L0P8T2 as seed ortholog is 100%.

Group of orthologs #109. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 P.jiroveci:77

O84033              	100.00%		L0PAN5              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for L0PAN5 as seed ortholog is 100%.

Group of orthologs #110. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 P.jiroveci:77

P36424              	100.00%		L0P8K4              	100.00%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for L0P8K4 as seed ortholog is 100%.

Group of orthologs #111. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 P.jiroveci:77

O84391              	100.00%		L0PFZ0              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for L0PFZ0 as seed ortholog is 100%.

Group of orthologs #112. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.jiroveci:74

O84338              	100.00%		L0P891              	100.00%
                    	       		L0PE19              	18.58%
                    	       		L0P7P4              	5.82%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for L0P891 as seed ortholog is 100%.

Group of orthologs #113. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.jiroveci:74

O84532              	100.00%		L0PAW5              	100.00%
Bootstrap support for O84532 as seed ortholog is 100%.
Bootstrap support for L0PAW5 as seed ortholog is 100%.

Group of orthologs #114. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.jiroveci:74

O84127              	100.00%		L0PDS8              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for L0PDS8 as seed ortholog is 100%.

Group of orthologs #115. Best score 72 bits
Score difference with first non-orthologous sequence - C.trachomatis:1 P.jiroveci:20

O84154              	100.00%		L0PCR9              	100.00%
O84660              	7.38%		L0PEH1              	9.06%
O84132              	5.46%		
Bootstrap support for O84154 as seed ortholog is 51%.
Alternative seed ortholog is O84183 (1 bits away from this cluster)
Bootstrap support for L0PCR9 as seed ortholog is 73%.
Alternative seed ortholog is L0P6Z2 (20 bits away from this cluster)

Group of orthologs #116. Best score 70 bits
Score difference with first non-orthologous sequence - C.trachomatis:70 P.jiroveci:70

O84200              	100.00%		L0PIR9              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for L0PIR9 as seed ortholog is 100%.

Group of orthologs #117. Best score 69 bits
Score difference with first non-orthologous sequence - C.trachomatis:69 P.jiroveci:69

P0CD83              	100.00%		L0P875              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for L0P875 as seed ortholog is 100%.

Group of orthologs #118. Best score 68 bits
Score difference with first non-orthologous sequence - C.trachomatis:68 P.jiroveci:68

O84680              	100.00%		L0PCN5              	100.00%
                    	       		L0P7B6              	93.70%
                    	       		L0PDN2              	9.30%
                    	       		L0P7J6              	8.16%
                    	       		L0P942              	7.54%
                    	       		L0PB86              	6.10%
                    	       		L0PGT4              	5.58%
Bootstrap support for O84680 as seed ortholog is 100%.
Bootstrap support for L0PCN5 as seed ortholog is 100%.

Group of orthologs #119. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 P.jiroveci:67

O84544              	100.00%		L0P9W7              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for L0P9W7 as seed ortholog is 100%.

Group of orthologs #120. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 P.jiroveci:66

O84331              	100.00%		L0P9H8              	100.00%
Bootstrap support for O84331 as seed ortholog is 100%.
Bootstrap support for L0P9H8 as seed ortholog is 100%.

Group of orthologs #121. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 P.jiroveci:66

P0C0Z8              	100.00%		L0PD91              	100.00%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for L0PD91 as seed ortholog is 100%.

Group of orthologs #122. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 P.jiroveci:63

O84353              	100.00%		L0PBL2              	100.00%
Bootstrap support for O84353 as seed ortholog is 100%.
Bootstrap support for L0PBL2 as seed ortholog is 100%.

Group of orthologs #123. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 P.jiroveci:62

O84665              	100.00%		L0P852              	100.00%
O84108              	8.54%		
Bootstrap support for O84665 as seed ortholog is 100%.
Bootstrap support for L0P852 as seed ortholog is 100%.

Group of orthologs #124. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.jiroveci:59

O84833              	100.00%		L0PA77              	100.00%
Bootstrap support for O84833 as seed ortholog is 100%.
Bootstrap support for L0PA77 as seed ortholog is 100%.

Group of orthologs #125. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.jiroveci:59

O84384              	100.00%		L0PDL1              	100.00%
Bootstrap support for O84384 as seed ortholog is 100%.
Bootstrap support for L0PDL1 as seed ortholog is 100%.

Group of orthologs #126. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.jiroveci:59

O84503              	100.00%		L0PFH1              	100.00%
Bootstrap support for O84503 as seed ortholog is 100%.
Bootstrap support for L0PFH1 as seed ortholog is 100%.

Group of orthologs #127. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.jiroveci:58

O84703              	100.00%		L0P8J0              	100.00%
Bootstrap support for O84703 as seed ortholog is 100%.
Bootstrap support for L0P8J0 as seed ortholog is 100%.

Group of orthologs #128. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.jiroveci:58

O84410              	100.00%		L0P9Q1              	100.00%
Bootstrap support for O84410 as seed ortholog is 100%.
Bootstrap support for L0P9Q1 as seed ortholog is 100%.

Group of orthologs #129. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.jiroveci:58

P0CE02              	100.00%		L0P9N4              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for L0P9N4 as seed ortholog is 100%.

Group of orthologs #130. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.jiroveci:58

P0CD81              	100.00%		L0PCA8              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for L0PCA8 as seed ortholog is 100%.

Group of orthologs #131. Best score 57 bits
Score difference with first non-orthologous sequence - C.trachomatis:57 P.jiroveci:8

O84578              	100.00%		L0PF23              	100.00%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for L0PF23 as seed ortholog is 56%.
Alternative seed ortholog is L0PFQ7 (8 bits away from this cluster)

Group of orthologs #132. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 P.jiroveci:56

O84547              	100.00%		L0PCY5              	100.00%
Bootstrap support for O84547 as seed ortholog is 100%.
Bootstrap support for L0PCY5 as seed ortholog is 100%.

Group of orthologs #133. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 P.jiroveci:55

O84299              	100.00%		L0PGY1              	100.00%
Bootstrap support for O84299 as seed ortholog is 100%.
Bootstrap support for L0PGY1 as seed ortholog is 100%.

Group of orthologs #134. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 P.jiroveci:54

O84239              	100.00%		L0PAS9              	100.00%
Bootstrap support for O84239 as seed ortholog is 100%.
Bootstrap support for L0PAS9 as seed ortholog is 100%.

Group of orthologs #135. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.jiroveci:50

O84029              	100.00%		L0PCN6              	100.00%
Bootstrap support for O84029 as seed ortholog is 100%.
Bootstrap support for L0PCN6 as seed ortholog is 100%.

Group of orthologs #136. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 P.jiroveci:49

O84618              	100.00%		L0P7T1              	100.00%
Bootstrap support for O84618 as seed ortholog is 100%.
Bootstrap support for L0P7T1 as seed ortholog is 100%.

Group of orthologs #137. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 P.jiroveci:49

O84031              	100.00%		L0PF41              	100.00%
Bootstrap support for O84031 as seed ortholog is 100%.
Bootstrap support for L0PF41 as seed ortholog is 100%.

Group of orthologs #138. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 P.jiroveci:48

P0CE06              	100.00%		L0P8D1              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for L0P8D1 as seed ortholog is 100%.

Group of orthologs #139. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 P.jiroveci:47

P0CE05              	100.00%		L0PBX7              	100.00%
Bootstrap support for P0CE05 as seed ortholog is 100%.
Bootstrap support for L0PBX7 as seed ortholog is 100%.

Group of orthologs #140. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 P.jiroveci:45

O84191              	100.00%		L0PE02              	100.00%
Bootstrap support for O84191 as seed ortholog is 100%.
Bootstrap support for L0PE02 as seed ortholog is 100%.

Group of orthologs #141. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 P.jiroveci:44

P0CD80              	100.00%		L0PDH7              	100.00%
                    	       		L0PFP2              	39.66%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for L0PDH7 as seed ortholog is 100%.

Group of orthologs #142. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 P.jiroveci:44

O84777              	100.00%		L0PDC7              	100.00%
Bootstrap support for O84777 as seed ortholog is 100%.
Bootstrap support for L0PDC7 as seed ortholog is 100%.

Group of orthologs #143. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 P.jiroveci:44

O84128              	100.00%		L0PGZ5              	100.00%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for L0PGZ5 as seed ortholog is 100%.

Group of orthologs #144. Best score 40 bits
Score difference with first non-orthologous sequence - C.trachomatis:40 P.jiroveci:40

O84297              	100.00%		L0PEE4              	100.00%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for L0PEE4 as seed ortholog is 100%.