###################################
175 groups of orthologs
182 in-paralogs from C.trachomatis
190 in-paralogs from P.knowlesi
Grey zone 0 bits
Score cutoff 40 bits
In-paralogs with confidence less than 0.05 not shown
Sequence overlap cutoff 0.5
Group merging cutoff 0.5
Scoring matrix BLOSUM62
###################################

Group of orthologs #1. Best score 794 bits
Score difference with first non-orthologous sequence - C.trachomatis:794 P.knowlesi:587

O84022              	100.00%		B3L8Q4              	100.00%
Bootstrap support for O84022 as seed ortholog is 100%.
Bootstrap support for B3L8Q4 as seed ortholog is 100%.

Group of orthologs #2. Best score 699 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.knowlesi:191

O84115              	100.00%		B3L1E0              	100.00%
Bootstrap support for O84115 as seed ortholog is 88%.
Bootstrap support for B3L1E0 as seed ortholog is 99%.

Group of orthologs #3. Best score 681 bits
Score difference with first non-orthologous sequence - C.trachomatis:681 P.knowlesi:156

P17821              	100.00%		B3L5E9              	100.00%
Bootstrap support for P17821 as seed ortholog is 100%.
Bootstrap support for B3L5E9 as seed ortholog is 99%.

Group of orthologs #4. Best score 534 bits
Score difference with first non-orthologous sequence - C.trachomatis:344 P.knowlesi:153

P0C0Z7              	100.00%		B3L3U9              	100.00%
Bootstrap support for P0C0Z7 as seed ortholog is 100%.
Bootstrap support for B3L3U9 as seed ortholog is 99%.

Group of orthologs #5. Best score 506 bits
Score difference with first non-orthologous sequence - C.trachomatis:506 P.knowlesi:431

O84211              	100.00%		B3L108              	100.00%
Bootstrap support for O84211 as seed ortholog is 100%.
Bootstrap support for B3L108 as seed ortholog is 100%.

Group of orthologs #6. Best score 500 bits
Score difference with first non-orthologous sequence - C.trachomatis:500 P.knowlesi:351

O84304              	100.00%		B3L9E5              	100.00%
Bootstrap support for O84304 as seed ortholog is 100%.
Bootstrap support for B3L9E5 as seed ortholog is 100%.

Group of orthologs #7. Best score 484 bits
Score difference with first non-orthologous sequence - C.trachomatis:484 P.knowlesi:484

O84057              	100.00%		B3L184              	100.00%
Bootstrap support for O84057 as seed ortholog is 100%.
Bootstrap support for B3L184 as seed ortholog is 100%.

Group of orthologs #8. Best score 483 bits
Score difference with first non-orthologous sequence - C.trachomatis:483 P.knowlesi:483

O84834              	100.00%		B3LBC1              	100.00%
Bootstrap support for O84834 as seed ortholog is 100%.
Bootstrap support for B3LBC1 as seed ortholog is 100%.

Group of orthologs #9. Best score 468 bits
Score difference with first non-orthologous sequence - C.trachomatis:468 P.knowlesi:468

O84755              	100.00%		B3L7U8              	100.00%
Bootstrap support for O84755 as seed ortholog is 100%.
Bootstrap support for B3L7U8 as seed ortholog is 100%.

Group of orthologs #10. Best score 468 bits
Score difference with first non-orthologous sequence - C.trachomatis:468 P.knowlesi:468

P0CD73              	100.00%		B3LD81              	100.00%
Bootstrap support for P0CD73 as seed ortholog is 100%.
Bootstrap support for B3LD81 as seed ortholog is 100%.

Group of orthologs #11. Best score 459 bits
Score difference with first non-orthologous sequence - C.trachomatis:459 P.knowlesi:6

O84444              	100.00%		B3LCX4              	100.00%
Bootstrap support for O84444 as seed ortholog is 100%.
Bootstrap support for B3LCX4 as seed ortholog is 87%.

Group of orthologs #12. Best score 451 bits
Score difference with first non-orthologous sequence - C.trachomatis:451 P.knowlesi:451

O84585              	100.00%		B3L565              	100.00%
Bootstrap support for O84585 as seed ortholog is 100%.
Bootstrap support for B3L565 as seed ortholog is 100%.

Group of orthologs #13. Best score 438 bits
Score difference with first non-orthologous sequence - C.trachomatis:438 P.knowlesi:276

P0CD71              	100.00%		B3L8S5              	100.00%
Bootstrap support for P0CD71 as seed ortholog is 100%.
Bootstrap support for B3L8S5 as seed ortholog is 100%.

Group of orthologs #14. Best score 419 bits
Score difference with first non-orthologous sequence - C.trachomatis:419 P.knowlesi:419

Q59321              	100.00%		B3LAR4              	100.00%
Bootstrap support for Q59321 as seed ortholog is 100%.
Bootstrap support for B3LAR4 as seed ortholog is 100%.

Group of orthologs #15. Best score 418 bits
Score difference with first non-orthologous sequence - C.trachomatis:418 P.knowlesi:246

O84067              	100.00%		B3L3C9              	100.00%
Bootstrap support for O84067 as seed ortholog is 100%.
Bootstrap support for B3L3C9 as seed ortholog is 99%.

Group of orthologs #16. Best score 415 bits
Score difference with first non-orthologous sequence - C.trachomatis:415 P.knowlesi:415

O84754              	100.00%		B3L6U2              	100.00%
Bootstrap support for O84754 as seed ortholog is 100%.
Bootstrap support for B3L6U2 as seed ortholog is 100%.

Group of orthologs #17. Best score 411 bits
Score difference with first non-orthologous sequence - C.trachomatis:237 P.knowlesi:411

O84193              	100.00%		B3LD45              	100.00%
Bootstrap support for O84193 as seed ortholog is 99%.
Bootstrap support for B3LD45 as seed ortholog is 100%.

Group of orthologs #18. Best score 401 bits
Score difference with first non-orthologous sequence - C.trachomatis:401 P.knowlesi:1

O84848              	100.00%		B3LD47              	100.00%
Bootstrap support for O84848 as seed ortholog is 100%.
Bootstrap support for B3LD47 as seed ortholog is 54%.
Alternative seed ortholog is B3L4Z9 (1 bits away from this cluster)

Group of orthologs #19. Best score 391 bits
Score difference with first non-orthologous sequence - C.trachomatis:391 P.knowlesi:391

O84060              	100.00%		B3L1Y7              	100.00%
Bootstrap support for O84060 as seed ortholog is 100%.
Bootstrap support for B3L1Y7 as seed ortholog is 100%.

Group of orthologs #20. Best score 389 bits
Score difference with first non-orthologous sequence - C.trachomatis:389 P.knowlesi:389

O84348              	100.00%		B3LAL1              	100.00%
Bootstrap support for O84348 as seed ortholog is 100%.
Bootstrap support for B3LAL1 as seed ortholog is 100%.

Group of orthologs #21. Best score 384 bits
Score difference with first non-orthologous sequence - C.trachomatis:384 P.knowlesi:384

O84066              	100.00%		B3L9M2              	100.00%
Bootstrap support for O84066 as seed ortholog is 100%.
Bootstrap support for B3L9M2 as seed ortholog is 100%.

Group of orthologs #22. Best score 379 bits
Score difference with first non-orthologous sequence - C.trachomatis:379 P.knowlesi:379

O84460              	100.00%		B3LCI0              	100.00%
Bootstrap support for O84460 as seed ortholog is 100%.
Bootstrap support for B3LCI0 as seed ortholog is 100%.

Group of orthologs #23. Best score 368 bits
Score difference with first non-orthologous sequence - C.trachomatis:368 P.knowlesi:368

O84591              	100.00%		B3L3V4              	100.00%
Bootstrap support for O84591 as seed ortholog is 100%.
Bootstrap support for B3L3V4 as seed ortholog is 100%.

Group of orthologs #24. Best score 368 bits
Score difference with first non-orthologous sequence - C.trachomatis:368 P.knowlesi:368

P0CE13              	100.00%		B3L9D3              	100.00%
Bootstrap support for P0CE13 as seed ortholog is 100%.
Bootstrap support for B3L9D3 as seed ortholog is 100%.

Group of orthologs #25. Best score 353 bits
Score difference with first non-orthologous sequence - C.trachomatis:353 P.knowlesi:266

O84310              	100.00%		B3LBT4              	100.00%
Bootstrap support for O84310 as seed ortholog is 100%.
Bootstrap support for B3LBT4 as seed ortholog is 100%.

Group of orthologs #26. Best score 311 bits
Score difference with first non-orthologous sequence - C.trachomatis:311 P.knowlesi:311

O84829              	100.00%		B3L4N7              	100.00%
Bootstrap support for O84829 as seed ortholog is 100%.
Bootstrap support for B3L4N7 as seed ortholog is 100%.

Group of orthologs #27. Best score 309 bits
Score difference with first non-orthologous sequence - C.trachomatis:309 P.knowlesi:309

P0CD78              	100.00%		B3L2P2              	100.00%
Bootstrap support for P0CD78 as seed ortholog is 100%.
Bootstrap support for B3L2P2 as seed ortholog is 100%.

Group of orthologs #28. Best score 305 bits
Score difference with first non-orthologous sequence - C.trachomatis:305 P.knowlesi:305

P0CE09              	100.00%		B3L0J5              	100.00%
                    	       		B3LB54              	14.99%
                    	       		B3L5F6              	5.48%
Bootstrap support for P0CE09 as seed ortholog is 100%.
Bootstrap support for B3L0J5 as seed ortholog is 100%.

Group of orthologs #29. Best score 303 bits
Score difference with first non-orthologous sequence - C.trachomatis:303 P.knowlesi:303

O84775              	100.00%		B3L7E4              	100.00%
Bootstrap support for O84775 as seed ortholog is 100%.
Bootstrap support for B3L7E4 as seed ortholog is 100%.

Group of orthologs #30. Best score 294 bits
Score difference with first non-orthologous sequence - C.trachomatis:294 P.knowlesi:294

O84106              	100.00%		B3L7Q3              	100.00%
Bootstrap support for O84106 as seed ortholog is 100%.
Bootstrap support for B3L7Q3 as seed ortholog is 100%.

Group of orthologs #31. Best score 290 bits
Score difference with first non-orthologous sequence - C.trachomatis:290 P.knowlesi:290

O84316              	100.00%		B3L428              	100.00%
                    	       		B3L8U1              	10.41%
Bootstrap support for O84316 as seed ortholog is 100%.
Bootstrap support for B3L428 as seed ortholog is 100%.

Group of orthologs #32. Best score 290 bits
Score difference with first non-orthologous sequence - C.trachomatis:290 P.knowlesi:290

O84192              	100.00%		B3LCM1              	100.00%
Bootstrap support for O84192 as seed ortholog is 100%.
Bootstrap support for B3LCM1 as seed ortholog is 100%.

Group of orthologs #33. Best score 285 bits
Score difference with first non-orthologous sequence - C.trachomatis:285 P.knowlesi:76

O84797              	100.00%		B3L6L5              	100.00%
Bootstrap support for O84797 as seed ortholog is 100%.
Bootstrap support for B3L6L5 as seed ortholog is 95%.

Group of orthologs #34. Best score 281 bits
Score difference with first non-orthologous sequence - C.trachomatis:281 P.knowlesi:281

O84786              	100.00%		B3L892              	100.00%
Bootstrap support for O84786 as seed ortholog is 100%.
Bootstrap support for B3L892 as seed ortholog is 100%.

Group of orthologs #35. Best score 278 bits
Score difference with first non-orthologous sequence - C.trachomatis:278 P.knowlesi:278

O84867              	100.00%		B3KZN0              	100.00%
Bootstrap support for O84867 as seed ortholog is 100%.
Bootstrap support for B3KZN0 as seed ortholog is 100%.

Group of orthologs #36. Best score 275 bits
Score difference with first non-orthologous sequence - C.trachomatis:275 P.knowlesi:275

O84823              	100.00%		B3L212              	100.00%
Bootstrap support for O84823 as seed ortholog is 100%.
Bootstrap support for B3L212 as seed ortholog is 100%.

Group of orthologs #37. Best score 268 bits
Score difference with first non-orthologous sequence - C.trachomatis:268 P.knowlesi:27

P0CE21              	100.00%		B3L7D9              	100.00%
Bootstrap support for P0CE21 as seed ortholog is 100%.
Bootstrap support for B3L7D9 as seed ortholog is 78%.

Group of orthologs #38. Best score 264 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.knowlesi:69

O84248              	100.00%		B3L9V4              	100.00%
Bootstrap support for O84248 as seed ortholog is 95%.
Bootstrap support for B3L9V4 as seed ortholog is 98%.

Group of orthologs #39. Best score 261 bits
Score difference with first non-orthologous sequence - C.trachomatis:261 P.knowlesi:261

O84451              	100.00%		B3L752              	100.00%
Bootstrap support for O84451 as seed ortholog is 100%.
Bootstrap support for B3L752 as seed ortholog is 100%.

Group of orthologs #40. Best score 260 bits
Score difference with first non-orthologous sequence - C.trachomatis:83 P.knowlesi:155

O84058              	100.00%		B3LC21              	100.00%
Bootstrap support for O84058 as seed ortholog is 98%.
Bootstrap support for B3LC21 as seed ortholog is 99%.

Group of orthologs #41. Best score 256 bits
Score difference with first non-orthologous sequence - C.trachomatis:256 P.knowlesi:183

O84309              	100.00%		B3KZZ1              	100.00%
Bootstrap support for O84309 as seed ortholog is 100%.
Bootstrap support for B3KZZ1 as seed ortholog is 99%.

Group of orthologs #42. Best score 251 bits
Score difference with first non-orthologous sequence - C.trachomatis:251 P.knowlesi:78

O84561              	100.00%		B3LCW5              	100.00%
Bootstrap support for O84561 as seed ortholog is 100%.
Bootstrap support for B3LCW5 as seed ortholog is 94%.

Group of orthologs #43. Best score 250 bits
Score difference with first non-orthologous sequence - C.trachomatis:250 P.knowlesi:250

O84094              	100.00%		B3L0B3              	100.00%
Bootstrap support for O84094 as seed ortholog is 100%.
Bootstrap support for B3L0B3 as seed ortholog is 100%.

Group of orthologs #44. Best score 247 bits
Score difference with first non-orthologous sequence - C.trachomatis:247 P.knowlesi:247

O84828              	100.00%		B3LA75              	100.00%
Bootstrap support for O84828 as seed ortholog is 100%.
Bootstrap support for B3LA75 as seed ortholog is 100%.

Group of orthologs #45. Best score 245 bits
Score difference with first non-orthologous sequence - C.trachomatis:245 P.knowlesi:245

P0CD72              	100.00%		B3LBD4              	100.00%
Bootstrap support for P0CD72 as seed ortholog is 100%.
Bootstrap support for B3LBD4 as seed ortholog is 100%.

Group of orthologs #46. Best score 244 bits
Score difference with first non-orthologous sequence - C.trachomatis:244 P.knowlesi:244

O84439              	100.00%		B3LD11              	100.00%
Bootstrap support for O84439 as seed ortholog is 100%.
Bootstrap support for B3LD11 as seed ortholog is 100%.

Group of orthologs #47. Best score 243 bits
Score difference with first non-orthologous sequence - C.trachomatis:243 P.knowlesi:243

O84562              	100.00%		B3L8F2              	100.00%
Bootstrap support for O84562 as seed ortholog is 100%.
Bootstrap support for B3L8F2 as seed ortholog is 100%.

Group of orthologs #48. Best score 243 bits
Score difference with first non-orthologous sequence - C.trachomatis:243 P.knowlesi:119

O84196              	100.00%		B3LD63              	100.00%
Bootstrap support for O84196 as seed ortholog is 100%.
Bootstrap support for B3LD63 as seed ortholog is 98%.

Group of orthologs #49. Best score 230 bits
Score difference with first non-orthologous sequence - C.trachomatis:230 P.knowlesi:230

O84049              	100.00%		B3L9V6              	100.00%
Bootstrap support for O84049 as seed ortholog is 100%.
Bootstrap support for B3L9V6 as seed ortholog is 100%.

Group of orthologs #50. Best score 226 bits
Score difference with first non-orthologous sequence - C.trachomatis:226 P.knowlesi:226

O84373              	100.00%		B3L7H9              	100.00%
Bootstrap support for O84373 as seed ortholog is 100%.
Bootstrap support for B3L7H9 as seed ortholog is 100%.

Group of orthologs #51. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:223 P.knowlesi:223

O84297              	100.00%		B3L3R5              	100.00%
Bootstrap support for O84297 as seed ortholog is 100%.
Bootstrap support for B3L3R5 as seed ortholog is 100%.

Group of orthologs #52. Best score 223 bits
Score difference with first non-orthologous sequence - C.trachomatis:223 P.knowlesi:146

P38004              	100.00%		B3L2P6              	100.00%
Bootstrap support for P38004 as seed ortholog is 100%.
Bootstrap support for B3L2P6 as seed ortholog is 100%.

Group of orthologs #53. Best score 222 bits
Score difference with first non-orthologous sequence - C.trachomatis:222 P.knowlesi:222

O84698              	100.00%		B3L8I7              	100.00%
Bootstrap support for O84698 as seed ortholog is 100%.
Bootstrap support for B3L8I7 as seed ortholog is 100%.

Group of orthologs #54. Best score 218 bits
Score difference with first non-orthologous sequence - C.trachomatis:218 P.knowlesi:127

O84530              	100.00%		B3L5D5              	100.00%
Bootstrap support for O84530 as seed ortholog is 100%.
Bootstrap support for B3L5D5 as seed ortholog is 99%.

Group of orthologs #55. Best score 218 bits
Score difference with first non-orthologous sequence - C.trachomatis:218 P.knowlesi:218

O84074              	100.00%		B3L986              	100.00%
Bootstrap support for O84074 as seed ortholog is 100%.
Bootstrap support for B3L986 as seed ortholog is 100%.

Group of orthologs #56. Best score 214 bits
Score difference with first non-orthologous sequence - C.trachomatis:214 P.knowlesi:68

O84352              	100.00%		B3L520              	100.00%
Bootstrap support for O84352 as seed ortholog is 100%.
Bootstrap support for B3L520 as seed ortholog is 98%.

Group of orthologs #57. Best score 210 bits
Score difference with first non-orthologous sequence - C.trachomatis:210 P.knowlesi:66

O84345              	100.00%		B3L024              	100.00%
Bootstrap support for O84345 as seed ortholog is 100%.
Bootstrap support for B3L024 as seed ortholog is 95%.

Group of orthologs #58. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 P.knowlesi:205

O84596              	100.00%		B3L2B2              	100.00%
Bootstrap support for O84596 as seed ortholog is 100%.
Bootstrap support for B3L2B2 as seed ortholog is 100%.

Group of orthologs #59. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 P.knowlesi:96

O84028              	100.00%		B3L9R6              	100.00%
Bootstrap support for O84028 as seed ortholog is 100%.
Bootstrap support for B3L9R6 as seed ortholog is 99%.

Group of orthologs #60. Best score 205 bits
Score difference with first non-orthologous sequence - C.trachomatis:205 P.knowlesi:90

O84709              	100.00%		B3LCG7              	100.00%
Bootstrap support for O84709 as seed ortholog is 100%.
Bootstrap support for B3LCG7 as seed ortholog is 99%.

Group of orthologs #61. Best score 200 bits
Score difference with first non-orthologous sequence - C.trachomatis:200 P.knowlesi:200

O84831              	100.00%		B3L714              	100.00%
Bootstrap support for O84831 as seed ortholog is 100%.
Bootstrap support for B3L714 as seed ortholog is 100%.

Group of orthologs #62. Best score 194 bits
Score difference with first non-orthologous sequence - C.trachomatis:194 P.knowlesi:194

O84813              	100.00%		B3LBZ7              	100.00%
Bootstrap support for O84813 as seed ortholog is 100%.
Bootstrap support for B3LBZ7 as seed ortholog is 100%.

Group of orthologs #63. Best score 192 bits
Score difference with first non-orthologous sequence - C.trachomatis:192 P.knowlesi:192

O84691              	100.00%		B3LAN0              	100.00%
Bootstrap support for O84691 as seed ortholog is 100%.
Bootstrap support for B3LAN0 as seed ortholog is 100%.

Group of orthologs #64. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 P.knowlesi:19

O84098              	100.00%		B3L119              	100.00%
Bootstrap support for O84098 as seed ortholog is 100%.
Bootstrap support for B3L119 as seed ortholog is 85%.

Group of orthologs #65. Best score 190 bits
Score difference with first non-orthologous sequence - C.trachomatis:190 P.knowlesi:21

O84859              	100.00%		B3L3U6              	100.00%
Bootstrap support for O84859 as seed ortholog is 100%.
Bootstrap support for B3L3U6 as seed ortholog is 74%.
Alternative seed ortholog is B3L5Y8 (21 bits away from this cluster)

Group of orthologs #66. Best score 188 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 P.knowlesi:188

O84614              	100.00%		B3L6C4              	100.00%
Bootstrap support for O84614 as seed ortholog is 94%.
Bootstrap support for B3L6C4 as seed ortholog is 100%.

Group of orthologs #67. Best score 185 bits
Score difference with first non-orthologous sequence - C.trachomatis:185 P.knowlesi:185

O84242              	100.00%		B3L0P1              	100.00%
Bootstrap support for O84242 as seed ortholog is 100%.
Bootstrap support for B3L0P1 as seed ortholog is 100%.

Group of orthologs #68. Best score 180 bits
Score difference with first non-orthologous sequence - C.trachomatis:180 P.knowlesi:180

O84638              	100.00%		B3LA15              	100.00%
Bootstrap support for O84638 as seed ortholog is 100%.
Bootstrap support for B3LA15 as seed ortholog is 100%.

Group of orthologs #69. Best score 180 bits
Score difference with first non-orthologous sequence - C.trachomatis:180 P.knowlesi:180

O84613              	100.00%		B3LAL0              	100.00%
Bootstrap support for O84613 as seed ortholog is 100%.
Bootstrap support for B3LAL0 as seed ortholog is 100%.

Group of orthologs #70. Best score 176 bits
Score difference with first non-orthologous sequence - C.trachomatis:176 P.knowlesi:176

O84630              	100.00%		B3L8Q7              	100.00%
Bootstrap support for O84630 as seed ortholog is 100%.
Bootstrap support for B3L8Q7 as seed ortholog is 100%.

Group of orthologs #71. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 P.knowlesi:98

O84608              	100.00%		B3LA28              	100.00%
                    	       		B3LCE5              	18.92%
Bootstrap support for O84608 as seed ortholog is 100%.
Bootstrap support for B3LA28 as seed ortholog is 99%.

Group of orthologs #72. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 P.knowlesi:173

O84006              	100.00%		B3L1I5              	100.00%
Bootstrap support for O84006 as seed ortholog is 100%.
Bootstrap support for B3L1I5 as seed ortholog is 100%.

Group of orthologs #73. Best score 173 bits
Score difference with first non-orthologous sequence - C.trachomatis:173 P.knowlesi:26

O84734              	100.00%		B3LCF4              	100.00%
Bootstrap support for O84734 as seed ortholog is 100%.
Bootstrap support for B3LCF4 as seed ortholog is 64%.
Alternative seed ortholog is B3L070 (26 bits away from this cluster)

Group of orthologs #74. Best score 169 bits
Score difference with first non-orthologous sequence - C.trachomatis:169 P.knowlesi:169

O84693              	100.00%		B3L056              	100.00%
Bootstrap support for O84693 as seed ortholog is 100%.
Bootstrap support for B3L056 as seed ortholog is 100%.

Group of orthologs #75. Best score 168 bits
Score difference with first non-orthologous sequence - C.trachomatis:168 P.knowlesi:168

O84727              	100.00%		B3L504              	100.00%
Bootstrap support for O84727 as seed ortholog is 100%.
Bootstrap support for B3L504 as seed ortholog is 100%.

Group of orthologs #76. Best score 163 bits
Score difference with first non-orthologous sequence - C.trachomatis:163 P.knowlesi:163

O84557              	100.00%		B3LCU7              	100.00%
Bootstrap support for O84557 as seed ortholog is 100%.
Bootstrap support for B3LCU7 as seed ortholog is 100%.

Group of orthologs #77. Best score 160 bits
Score difference with first non-orthologous sequence - C.trachomatis:160 P.knowlesi:37

O84676              	100.00%		B3LD12              	100.00%
O84722              	12.84%		
Bootstrap support for O84676 as seed ortholog is 100%.
Bootstrap support for B3LD12 as seed ortholog is 83%.

Group of orthologs #78. Best score 158 bits
Score difference with first non-orthologous sequence - C.trachomatis:158 P.knowlesi:158

O84423              	100.00%		B3LAP9              	100.00%
Bootstrap support for O84423 as seed ortholog is 100%.
Bootstrap support for B3LAP9 as seed ortholog is 100%.

Group of orthologs #79. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 P.knowlesi:49

O84465              	100.00%		B3KYZ6              	100.00%
Bootstrap support for O84465 as seed ortholog is 100%.
Bootstrap support for B3KYZ6 as seed ortholog is 92%.

Group of orthologs #80. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 P.knowlesi:154

O84335              	100.00%		B3L8L9              	100.00%
Bootstrap support for O84335 as seed ortholog is 100%.
Bootstrap support for B3L8L9 as seed ortholog is 100%.

Group of orthologs #81. Best score 154 bits
Score difference with first non-orthologous sequence - C.trachomatis:154 P.knowlesi:38

O84332              	100.00%		B3LA18              	100.00%
Bootstrap support for O84332 as seed ortholog is 100%.
Bootstrap support for B3LA18 as seed ortholog is 89%.

Group of orthologs #82. Best score 153 bits
Score difference with first non-orthologous sequence - C.trachomatis:153 P.knowlesi:153

P36431              	100.00%		B3L2R9              	100.00%
Bootstrap support for P36431 as seed ortholog is 100%.
Bootstrap support for B3L2R9 as seed ortholog is 100%.

Group of orthologs #83. Best score 151 bits
Score difference with first non-orthologous sequence - C.trachomatis:151 P.knowlesi:151

O84260              	100.00%		B3KZQ8              	100.00%
Bootstrap support for O84260 as seed ortholog is 100%.
Bootstrap support for B3KZQ8 as seed ortholog is 100%.

Group of orthologs #84. Best score 150 bits
Score difference with first non-orthologous sequence - C.trachomatis:150 P.knowlesi:61

O84247              	100.00%		B3L549              	100.00%
Bootstrap support for O84247 as seed ortholog is 100%.
Bootstrap support for B3L549 as seed ortholog is 95%.

Group of orthologs #85. Best score 147 bits
Score difference with first non-orthologous sequence - C.trachomatis:147 P.knowlesi:147

O84383              	100.00%		B3L4T6              	100.00%
Bootstrap support for O84383 as seed ortholog is 100%.
Bootstrap support for B3L4T6 as seed ortholog is 100%.

Group of orthologs #86. Best score 146 bits
Score difference with first non-orthologous sequence - C.trachomatis:146 P.knowlesi:146

O84579              	100.00%		B3L4Y1              	100.00%
Bootstrap support for O84579 as seed ortholog is 100%.
Bootstrap support for B3L4Y1 as seed ortholog is 100%.

Group of orthologs #87. Best score 144 bits
Score difference with first non-orthologous sequence - C.trachomatis:144 P.knowlesi:144

O84642              	100.00%		B3L0V6              	100.00%
Bootstrap support for O84642 as seed ortholog is 100%.
Bootstrap support for B3L0V6 as seed ortholog is 100%.

Group of orthologs #88. Best score 144 bits
Score difference with first non-orthologous sequence - C.trachomatis:144 P.knowlesi:144

O84835              	100.00%		B3LAV4              	100.00%
Bootstrap support for O84835 as seed ortholog is 100%.
Bootstrap support for B3LAV4 as seed ortholog is 100%.

Group of orthologs #89. Best score 142 bits
Score difference with first non-orthologous sequence - C.trachomatis:142 P.knowlesi:142

P55137              	100.00%		B3LBM4              	100.00%
Bootstrap support for P55137 as seed ortholog is 100%.
Bootstrap support for B3LBM4 as seed ortholog is 100%.

Group of orthologs #90. Best score 141 bits
Score difference with first non-orthologous sequence - C.trachomatis:141 P.knowlesi:45

O84478              	100.00%		B3L198              	100.00%
Bootstrap support for O84478 as seed ortholog is 100%.
Bootstrap support for B3L198 as seed ortholog is 91%.

Group of orthologs #91. Best score 140 bits
Score difference with first non-orthologous sequence - C.trachomatis:140 P.knowlesi:140

O84296              	100.00%		B3LC58              	100.00%
                    	       		B3L7H4              	25.17%
Bootstrap support for O84296 as seed ortholog is 100%.
Bootstrap support for B3LC58 as seed ortholog is 100%.

Group of orthologs #92. Best score 138 bits
Score difference with first non-orthologous sequence - C.trachomatis:138 P.knowlesi:9

O84266              	100.00%		B3LB86              	100.00%
Bootstrap support for O84266 as seed ortholog is 100%.
Bootstrap support for B3LB86 as seed ortholog is 56%.
Alternative seed ortholog is B3L8J6 (9 bits away from this cluster)

Group of orthologs #93. Best score 136 bits
Score difference with first non-orthologous sequence - C.trachomatis:136 P.knowlesi:136

O84065              	100.00%		B3L4X8              	100.00%
Bootstrap support for O84065 as seed ortholog is 100%.
Bootstrap support for B3L4X8 as seed ortholog is 100%.

Group of orthologs #94. Best score 134 bits
Score difference with first non-orthologous sequence - C.trachomatis:134 P.knowlesi:134

O84546              	100.00%		B3KZP7              	100.00%
Bootstrap support for O84546 as seed ortholog is 100%.
Bootstrap support for B3KZP7 as seed ortholog is 100%.

Group of orthologs #95. Best score 133 bits
Score difference with first non-orthologous sequence - C.trachomatis:133 P.knowlesi:133

O84771              	100.00%		B3LB63              	100.00%
Bootstrap support for O84771 as seed ortholog is 100%.
Bootstrap support for B3LB63 as seed ortholog is 100%.

Group of orthologs #96. Best score 132 bits
Score difference with first non-orthologous sequence - C.trachomatis:132 P.knowlesi:3

O84026              	100.00%		B3L2Z9              	100.00%
Bootstrap support for O84026 as seed ortholog is 100%.
Bootstrap support for B3L2Z9 as seed ortholog is 50%.
Alternative seed ortholog is B3LAA5 (3 bits away from this cluster)

Group of orthologs #97. Best score 128 bits
Score difference with first non-orthologous sequence - C.trachomatis:128 P.knowlesi:128

O84035              	100.00%		B3L3I0              	100.00%
                    	       		B3L2B7              	10.04%
Bootstrap support for O84035 as seed ortholog is 100%.
Bootstrap support for B3L3I0 as seed ortholog is 100%.

Group of orthologs #98. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:126 P.knowlesi:126

O84752              	100.00%		B3L7Y4              	100.00%
Bootstrap support for O84752 as seed ortholog is 100%.
Bootstrap support for B3L7Y4 as seed ortholog is 100%.

Group of orthologs #99. Best score 126 bits
Score difference with first non-orthologous sequence - C.trachomatis:126 P.knowlesi:126

O84123              	100.00%		B3LCI8              	100.00%
Bootstrap support for O84123 as seed ortholog is 100%.
Bootstrap support for B3LCI8 as seed ortholog is 100%.

Group of orthologs #100. Best score 119 bits
Score difference with first non-orthologous sequence - C.trachomatis:119 P.knowlesi:119

O84241              	100.00%		B3LBT5              	100.00%
Bootstrap support for O84241 as seed ortholog is 100%.
Bootstrap support for B3LBT5 as seed ortholog is 100%.

Group of orthologs #101. Best score 118 bits
Score difference with first non-orthologous sequence - C.trachomatis:118 P.knowlesi:118

O84732              	100.00%		B3KZL1              	100.00%
                    	       		B3LBA7              	14.65%
Bootstrap support for O84732 as seed ortholog is 100%.
Bootstrap support for B3KZL1 as seed ortholog is 100%.

Group of orthologs #102. Best score 117 bits
Score difference with first non-orthologous sequence - C.trachomatis:117 P.knowlesi:28

O84130              	100.00%		B3L3M8              	100.00%
Bootstrap support for O84130 as seed ortholog is 100%.
Bootstrap support for B3L3M8 as seed ortholog is 80%.

Group of orthologs #103. Best score 116 bits
Score difference with first non-orthologous sequence - C.trachomatis:116 P.knowlesi:116

O84033              	100.00%		B3L2W0              	100.00%
Bootstrap support for O84033 as seed ortholog is 100%.
Bootstrap support for B3L2W0 as seed ortholog is 100%.

Group of orthologs #104. Best score 114 bits
Score difference with first non-orthologous sequence - C.trachomatis:114 P.knowlesi:114

O84274              	100.00%		B3LD22              	100.00%
Bootstrap support for O84274 as seed ortholog is 100%.
Bootstrap support for B3LD22 as seed ortholog is 100%.

Group of orthologs #105. Best score 110 bits
Score difference with first non-orthologous sequence - C.trachomatis:110 P.knowlesi:110

O84537              	100.00%		B3L905              	100.00%
Bootstrap support for O84537 as seed ortholog is 100%.
Bootstrap support for B3L905 as seed ortholog is 100%.

Group of orthologs #106. Best score 108 bits
Score difference with first non-orthologous sequence - C.trachomatis:108 P.knowlesi:108

O84357              	100.00%		B3L389              	100.00%
Bootstrap support for O84357 as seed ortholog is 100%.
Bootstrap support for B3L389 as seed ortholog is 100%.

Group of orthologs #107. Best score 107 bits
Score difference with first non-orthologous sequence - C.trachomatis:107 P.knowlesi:107

O84728              	100.00%		B3L0G1              	100.00%
Bootstrap support for O84728 as seed ortholog is 100%.
Bootstrap support for B3L0G1 as seed ortholog is 100%.

Group of orthologs #108. Best score 107 bits
Score difference with first non-orthologous sequence - C.trachomatis:107 P.knowlesi:107

O84649              	100.00%		B3L8C2              	100.00%
Bootstrap support for O84649 as seed ortholog is 100%.
Bootstrap support for B3L8C2 as seed ortholog is 100%.

Group of orthologs #109. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 P.knowlesi:102

O84215              	100.00%		B3L6C0              	100.00%
Bootstrap support for O84215 as seed ortholog is 100%.
Bootstrap support for B3L6C0 as seed ortholog is 100%.

Group of orthologs #110. Best score 102 bits
Score difference with first non-orthologous sequence - C.trachomatis:102 P.knowlesi:102

O84508              	100.00%		B3L6V5              	100.00%
Bootstrap support for O84508 as seed ortholog is 100%.
Bootstrap support for B3L6V5 as seed ortholog is 100%.

Group of orthologs #111. Best score 101 bits
Score difference with first non-orthologous sequence - C.trachomatis:101 P.knowlesi:28

O84533              	100.00%		B3L2K0              	100.00%
Bootstrap support for O84533 as seed ortholog is 100%.
Bootstrap support for B3L2K0 as seed ortholog is 84%.

Group of orthologs #112. Best score 99 bits
Score difference with first non-orthologous sequence - C.trachomatis:99 P.knowlesi:99

O84843              	100.00%		B3L826              	100.00%
Bootstrap support for O84843 as seed ortholog is 100%.
Bootstrap support for B3L826 as seed ortholog is 100%.

Group of orthologs #113. Best score 98 bits
Score difference with first non-orthologous sequence - C.trachomatis:98 P.knowlesi:98

O84200              	100.00%		B3L268              	100.00%
Bootstrap support for O84200 as seed ortholog is 100%.
Bootstrap support for B3L268 as seed ortholog is 100%.

Group of orthologs #114. Best score 97 bits
Score difference with first non-orthologous sequence - C.trachomatis:97 P.knowlesi:32

O84589              	100.00%		B3LDG2              	100.00%
Bootstrap support for O84589 as seed ortholog is 100%.
Bootstrap support for B3LDG2 as seed ortholog is 74%.
Alternative seed ortholog is B3KZ67 (32 bits away from this cluster)

Group of orthologs #115. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 P.knowlesi:39

O84469              	100.00%		B3L6A5              	100.00%
Bootstrap support for O84469 as seed ortholog is 100%.
Bootstrap support for B3L6A5 as seed ortholog is 82%.

Group of orthologs #116. Best score 96 bits
Score difference with first non-orthologous sequence - C.trachomatis:96 P.knowlesi:96

O84720              	100.00%		B3L8G3              	100.00%
Bootstrap support for O84720 as seed ortholog is 100%.
Bootstrap support for B3L8G3 as seed ortholog is 100%.

Group of orthologs #117. Best score 94 bits
Score difference with first non-orthologous sequence - C.trachomatis:94 P.knowlesi:94

O84391              	100.00%		B3L7E0              	100.00%
Bootstrap support for O84391 as seed ortholog is 100%.
Bootstrap support for B3L7E0 as seed ortholog is 100%.

Group of orthologs #118. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 P.knowlesi:93

O84456              	100.00%		B3L125              	100.00%
Bootstrap support for O84456 as seed ortholog is 100%.
Bootstrap support for B3L125 as seed ortholog is 100%.

Group of orthologs #119. Best score 93 bits
Score difference with first non-orthologous sequence - C.trachomatis:93 P.knowlesi:93

O84507              	100.00%		B3L2Q3              	100.00%
Bootstrap support for O84507 as seed ortholog is 100%.
Bootstrap support for B3L2Q3 as seed ortholog is 100%.

Group of orthologs #120. Best score 92 bits
Score difference with first non-orthologous sequence - C.trachomatis:92 P.knowlesi:92

O84704              	100.00%		B3L1D4              	100.00%
Bootstrap support for O84704 as seed ortholog is 100%.
Bootstrap support for B3L1D4 as seed ortholog is 100%.

Group of orthologs #121. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 P.knowlesi:91

O84435              	100.00%		B3L0V2              	100.00%
Bootstrap support for O84435 as seed ortholog is 100%.
Bootstrap support for B3L0V2 as seed ortholog is 100%.

Group of orthologs #122. Best score 91 bits
Score difference with first non-orthologous sequence - C.trachomatis:91 P.knowlesi:91

O84212              	100.00%		B3L7W8              	100.00%
Bootstrap support for O84212 as seed ortholog is 100%.
Bootstrap support for B3L7W8 as seed ortholog is 100%.

Group of orthologs #123. Best score 90 bits
Score difference with first non-orthologous sequence - C.trachomatis:90 P.knowlesi:90

O84686              	100.00%		B3L4F0              	100.00%
Bootstrap support for O84686 as seed ortholog is 100%.
Bootstrap support for B3L4F0 as seed ortholog is 100%.

Group of orthologs #124. Best score 85 bits
Score difference with first non-orthologous sequence - C.trachomatis:85 P.knowlesi:85

O84338              	100.00%		B3L0H3              	100.00%
                    	       		B3L9C8              	21.58%
                    	       		B3L1L0              	19.82%
                    	       		B3L992              	19.82%
Bootstrap support for O84338 as seed ortholog is 100%.
Bootstrap support for B3L0H3 as seed ortholog is 100%.

Group of orthologs #125. Best score 84 bits
Score difference with first non-orthologous sequence - C.trachomatis:84 P.knowlesi:24

O84578              	100.00%		B3L9M5              	100.00%
Bootstrap support for O84578 as seed ortholog is 100%.
Bootstrap support for B3L9M5 as seed ortholog is 69%.
Alternative seed ortholog is B3L5Y8 (24 bits away from this cluster)

Group of orthologs #126. Best score 81 bits
Score difference with first non-orthologous sequence - C.trachomatis:81 P.knowlesi:81

P0CD79              	100.00%		B3L2V1              	100.00%
Bootstrap support for P0CD79 as seed ortholog is 100%.
Bootstrap support for B3L2V1 as seed ortholog is 100%.

Group of orthologs #127. Best score 80 bits
Score difference with first non-orthologous sequence - C.trachomatis:80 P.knowlesi:80

O84358              	100.00%		B3LAK2              	100.00%
Bootstrap support for O84358 as seed ortholog is 100%.
Bootstrap support for B3LAK2 as seed ortholog is 100%.

Group of orthologs #128. Best score 78 bits
Score difference with first non-orthologous sequence - C.trachomatis:78 P.knowlesi:78

O84595              	100.00%		B3LCC4              	100.00%
Bootstrap support for O84595 as seed ortholog is 100%.
Bootstrap support for B3LCC4 as seed ortholog is 100%.

Group of orthologs #129. Best score 77 bits
Score difference with first non-orthologous sequence - C.trachomatis:77 P.knowlesi:77

O84719              	100.00%		B3L4U8              	100.00%
                    	       		B3LCF6              	34.28%
Bootstrap support for O84719 as seed ortholog is 100%.
Bootstrap support for B3L4U8 as seed ortholog is 100%.

Group of orthologs #130. Best score 76 bits
Score difference with first non-orthologous sequence - C.trachomatis:76 P.knowlesi:76

P36424              	100.00%		B3L551              	100.00%
Bootstrap support for P36424 as seed ortholog is 100%.
Bootstrap support for B3L551 as seed ortholog is 100%.

Group of orthologs #131. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.knowlesi:74

O84239              	100.00%		B3L0R8              	100.00%
Bootstrap support for O84239 as seed ortholog is 100%.
Bootstrap support for B3L0R8 as seed ortholog is 100%.

Group of orthologs #132. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.knowlesi:74

O84081              	100.00%		B3L796              	100.00%
Bootstrap support for O84081 as seed ortholog is 100%.
Bootstrap support for B3L796 as seed ortholog is 100%.

Group of orthologs #133. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.knowlesi:4

O84544              	100.00%		B3L9J3              	100.00%
Bootstrap support for O84544 as seed ortholog is 100%.
Bootstrap support for B3L9J3 as seed ortholog is 56%.
Alternative seed ortholog is B3L2S1 (4 bits away from this cluster)

Group of orthologs #134. Best score 74 bits
Score difference with first non-orthologous sequence - C.trachomatis:74 P.knowlesi:74

O84320              	100.00%		B3LB88              	100.00%
Bootstrap support for O84320 as seed ortholog is 100%.
Bootstrap support for B3LB88 as seed ortholog is 100%.

Group of orthologs #135. Best score 71 bits
Score difference with first non-orthologous sequence - C.trachomatis:71 P.knowlesi:71

O84468              	100.00%		B3KZK5              	100.00%
Bootstrap support for O84468 as seed ortholog is 100%.
Bootstrap support for B3KZK5 as seed ortholog is 100%.

Group of orthologs #136. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 P.knowlesi:67

O84390              	100.00%		B3L1D1              	100.00%
Bootstrap support for O84390 as seed ortholog is 100%.
Bootstrap support for B3L1D1 as seed ortholog is 100%.

Group of orthologs #137. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 P.knowlesi:67

P0CE03              	100.00%		B3L6A6              	100.00%
Bootstrap support for P0CE03 as seed ortholog is 100%.
Bootstrap support for B3L6A6 as seed ortholog is 100%.

Group of orthologs #138. Best score 67 bits
Score difference with first non-orthologous sequence - C.trachomatis:67 P.knowlesi:67

P0C0Z8              	100.00%		B3LCE8              	100.00%
Bootstrap support for P0C0Z8 as seed ortholog is 100%.
Bootstrap support for B3LCE8 as seed ortholog is 100%.

Group of orthologs #139. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 P.knowlesi:23

O84127              	100.00%		B3L0K9              	100.00%
Bootstrap support for O84127 as seed ortholog is 100%.
Bootstrap support for B3L0K9 as seed ortholog is 80%.

Group of orthologs #140. Best score 66 bits
Score difference with first non-orthologous sequence - C.trachomatis:66 P.knowlesi:66

O84864              	100.00%		B3L945              	100.00%
Bootstrap support for O84864 as seed ortholog is 100%.
Bootstrap support for B3L945 as seed ortholog is 100%.

Group of orthologs #141. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 P.knowlesi:63

O84321              	100.00%		B3L4Q8              	100.00%
Bootstrap support for O84321 as seed ortholog is 100%.
Bootstrap support for B3L4Q8 as seed ortholog is 100%.

Group of orthologs #142. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 P.knowlesi:4

P0CD81              	100.00%		B3L674              	100.00%
Bootstrap support for P0CD81 as seed ortholog is 100%.
Bootstrap support for B3L674 as seed ortholog is 39%.
Alternative seed ortholog is B3L8R4 (4 bits away from this cluster)

Group of orthologs #143. Best score 63 bits
Score difference with first non-orthologous sequence - C.trachomatis:63 P.knowlesi:63

O84128              	100.00%		B3LC68              	100.00%
Bootstrap support for O84128 as seed ortholog is 100%.
Bootstrap support for B3LC68 as seed ortholog is 100%.

Group of orthologs #144. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 P.knowlesi:62

P0CE04              	100.00%		B3L567              	100.00%
Bootstrap support for P0CE04 as seed ortholog is 100%.
Bootstrap support for B3L567 as seed ortholog is 100%.

Group of orthologs #145. Best score 62 bits
Score difference with first non-orthologous sequence - C.trachomatis:62 P.knowlesi:62

O84842              	100.00%		B3LA36              	100.00%
Bootstrap support for O84842 as seed ortholog is 100%.
Bootstrap support for B3LA36 as seed ortholog is 100%.

Group of orthologs #146. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.knowlesi:59

P0CD84              	100.00%		B3L638              	100.00%
Bootstrap support for P0CD84 as seed ortholog is 100%.
Bootstrap support for B3L638 as seed ortholog is 100%.

Group of orthologs #147. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.knowlesi:59

O84810              	100.00%		B3L6P4              	100.00%
Bootstrap support for O84810 as seed ortholog is 100%.
Bootstrap support for B3L6P4 as seed ortholog is 100%.

Group of orthologs #148. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.knowlesi:59

O84527              	100.00%		B3L9A1              	100.00%
Bootstrap support for O84527 as seed ortholog is 100%.
Bootstrap support for B3L9A1 as seed ortholog is 100%.

Group of orthologs #149. Best score 59 bits
Score difference with first non-orthologous sequence - C.trachomatis:59 P.knowlesi:59

O84650              	100.00%		B3LAS6              	100.00%
Bootstrap support for O84650 as seed ortholog is 100%.
Bootstrap support for B3LAS6 as seed ortholog is 100%.

Group of orthologs #150. Best score 58 bits
Score difference with first non-orthologous sequence - C.trachomatis:58 P.knowlesi:58

P0A4C8              	100.00%		B3L9U8              	100.00%
Bootstrap support for P0A4C8 as seed ortholog is 100%.
Bootstrap support for B3L9U8 as seed ortholog is 100%.

Group of orthologs #151. Best score 56 bits
Score difference with first non-orthologous sequence - C.trachomatis:56 P.knowlesi:56

P0CE06              	100.00%		B3L0A6              	100.00%
Bootstrap support for P0CE06 as seed ortholog is 100%.
Bootstrap support for B3L0A6 as seed ortholog is 100%.

Group of orthologs #152. Best score 55 bits
Score difference with first non-orthologous sequence - C.trachomatis:55 P.knowlesi:55

P0CD83              	100.00%		B3LAW6              	100.00%
Bootstrap support for P0CD83 as seed ortholog is 100%.
Bootstrap support for B3LAW6 as seed ortholog is 100%.

Group of orthologs #153. Best score 54 bits
Score difference with first non-orthologous sequence - C.trachomatis:54 P.knowlesi:54

O84687              	100.00%		B3L230              	100.00%
Bootstrap support for O84687 as seed ortholog is 100%.
Bootstrap support for B3L230 as seed ortholog is 100%.

Group of orthologs #154. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 P.knowlesi:52

P66370              	100.00%		B3L4C7              	100.00%
Bootstrap support for P66370 as seed ortholog is 100%.
Bootstrap support for B3L4C7 as seed ortholog is 100%.

Group of orthologs #155. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 P.knowlesi:52

O84756              	100.00%		B3L6D2              	100.00%
Bootstrap support for O84756 as seed ortholog is 100%.
Bootstrap support for B3L6D2 as seed ortholog is 100%.

Group of orthologs #156. Best score 52 bits
Score difference with first non-orthologous sequence - C.trachomatis:52 P.knowlesi:52

O84499              	100.00%		B3L9Y0              	100.00%
Bootstrap support for O84499 as seed ortholog is 100%.
Bootstrap support for B3L9Y0 as seed ortholog is 100%.

Group of orthologs #157. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.knowlesi:50

O84071              	100.00%		B3LBF4              	100.00%
O84421              	10.85%		
O84132              	7.66%		
O84205              	6.17%		
O84183              	6.17%		
O84695              	5.74%		
O84154              	5.53%		
Bootstrap support for O84071 as seed ortholog is 100%.
Bootstrap support for B3LBF4 as seed ortholog is 100%.

Group of orthologs #158. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.knowlesi:50

O84781              	100.00%		B3L611              	100.00%
                    	       		B3LCZ9              	21.21%
                    	       		B3L0K1              	12.35%
Bootstrap support for O84781 as seed ortholog is 100%.
Bootstrap support for B3L611 as seed ortholog is 100%.

Group of orthologs #159. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.knowlesi:50

O84466              	100.00%		B3L685              	100.00%
Bootstrap support for O84466 as seed ortholog is 100%.
Bootstrap support for B3L685 as seed ortholog is 100%.

Group of orthologs #160. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.knowlesi:50

O84492              	100.00%		B3L6X2              	100.00%
Bootstrap support for O84492 as seed ortholog is 100%.
Bootstrap support for B3L6X2 as seed ortholog is 100%.

Group of orthologs #161. Best score 50 bits
Score difference with first non-orthologous sequence - C.trachomatis:50 P.knowlesi:50

P66480              	100.00%		B3LBZ3              	100.00%
Bootstrap support for P66480 as seed ortholog is 100%.
Bootstrap support for B3LBZ3 as seed ortholog is 100%.

Group of orthologs #162. Best score 49 bits
Score difference with first non-orthologous sequence - C.trachomatis:49 P.knowlesi:49

O84442              	100.00%		B3L7H7              	100.00%
Bootstrap support for O84442 as seed ortholog is 100%.
Bootstrap support for B3L7H7 as seed ortholog is 100%.

Group of orthologs #163. Best score 48 bits
Score difference with first non-orthologous sequence - C.trachomatis:48 P.knowlesi:48

O84840              	100.00%		B3L139              	100.00%
Bootstrap support for O84840 as seed ortholog is 100%.
Bootstrap support for B3L139 as seed ortholog is 100%.

Group of orthologs #164. Best score 47 bits
Score difference with first non-orthologous sequence - C.trachomatis:47 P.knowlesi:47

P0CD80              	100.00%		B3L1D8              	100.00%
                    	       		B3L4M7              	37.01%
Bootstrap support for P0CD80 as seed ortholog is 100%.
Bootstrap support for B3L1D8 as seed ortholog is 100%.

Group of orthologs #165. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 P.knowlesi:46

P0CE02              	100.00%		B3L3G6              	100.00%
Bootstrap support for P0CE02 as seed ortholog is 100%.
Bootstrap support for B3L3G6 as seed ortholog is 100%.

Group of orthologs #166. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:4 P.knowlesi:46

O84032              	100.00%		B3L7H0              	100.00%
Bootstrap support for O84032 as seed ortholog is 54%.
Alternative seed ortholog is O84011 (4 bits away from this cluster)
Bootstrap support for B3L7H0 as seed ortholog is 100%.

Group of orthologs #167. Best score 46 bits
Score difference with first non-orthologous sequence - C.trachomatis:46 P.knowlesi:46

O84776              	100.00%		B3L657              	100.00%
Bootstrap support for O84776 as seed ortholog is 100%.
Bootstrap support for B3L657 as seed ortholog is 100%.

Group of orthologs #168. Best score 45 bits
Score difference with first non-orthologous sequence - C.trachomatis:45 P.knowlesi:45

O84441              	100.00%		B3L0R0              	100.00%
Bootstrap support for O84441 as seed ortholog is 100%.
Bootstrap support for B3L0R0 as seed ortholog is 100%.

Group of orthologs #169. Best score 44 bits
Score difference with first non-orthologous sequence - C.trachomatis:44 P.knowlesi:44

O84496              	100.00%		B3LAG9              	100.00%
Bootstrap support for O84496 as seed ortholog is 100%.
Bootstrap support for B3LAG9 as seed ortholog is 100%.

Group of orthologs #170. Best score 43 bits
Score difference with first non-orthologous sequence - C.trachomatis:43 P.knowlesi:43

O84805              	100.00%		B3KZZ7              	100.00%
Bootstrap support for O84805 as seed ortholog is 100%.
Bootstrap support for B3KZZ7 as seed ortholog is 100%.

Group of orthologs #171. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 P.knowlesi:42

O84778              	100.00%		B3LA84              	100.00%
                    	       		B3LAJ5              	55.78%
Bootstrap support for O84778 as seed ortholog is 100%.
Bootstrap support for B3LA84 as seed ortholog is 100%.

Group of orthologs #172. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 P.knowlesi:42

O84545              	100.00%		B3L269              	100.00%
Bootstrap support for O84545 as seed ortholog is 100%.
Bootstrap support for B3L269 as seed ortholog is 100%.

Group of orthologs #173. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 P.knowlesi:42

O84792              	100.00%		B3L5I3              	100.00%
Bootstrap support for O84792 as seed ortholog is 100%.
Bootstrap support for B3L5I3 as seed ortholog is 100%.

Group of orthologs #174. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 P.knowlesi:42

O84851              	100.00%		B3L899              	100.00%
Bootstrap support for O84851 as seed ortholog is 100%.
Bootstrap support for B3L899 as seed ortholog is 100%.

Group of orthologs #175. Best score 42 bits
Score difference with first non-orthologous sequence - C.trachomatis:42 P.knowlesi:42

O84807              	100.00%		B3L9C2              	100.00%
Bootstrap support for O84807 as seed ortholog is 100%.
Bootstrap support for B3L9C2 as seed ortholog is 100%.